ID AM282557; SV 1; linear; genomic RNA; STD; VRL; 6287 BP. XX AC AM282557; XX DT 19-JUN-2006 (Rel. 88, Created) DT 19-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Chrysanthemum virus B mRNA for polyprotein, isolate Uttar Pradesh INDIA XX KW alkylated DNA repair protein; polyprotein; RNA dependent RNA polymerase; KW viral RNA helicase. XX OS Chrysanthemum virus B OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-6287 RA Singh L.; RT ; RL Submitted (17-JUN-2006) to the INSDC. RL Singh L., Plant Virus Lab Floriculture Division, Institute of Himalayan RL Bioresource Tech., P.O. Box - 6, Palampur, Distt. Kangra, Himachal Pradesh RL 176 061, INDIA. XX RN [2] RA Singh L., Hallan V., Ram R., Zaidi A.A.; RT "Molecular characterization of genomic RNA of Chrysanthemum virus B"; RL Unpublished. XX DR MD5; 4ca43cf5764f5cb4ee95feada8dc6487. XX FH Key Location/Qualifiers FH FT source 1..6287 FT /organism="Chrysanthemum virus B" FT /host="Chrysanthemum" FT /isolate="Uttar Pradesh" FT /mol_type="genomic RNA" FT /country="India:Uttar Pradesh" FT /db_xref="taxon:12165" FT CDS <1..6231 FT /product="polyprotein" FT /db_xref="GOA:Q17UV0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q17UV0" FT /protein_id="CAK54344.1" FT /translation="TYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLR FT PIAKRHLIEAGIYLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEF FT LKLRNSKLSTISKINRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPC FT LKEREAKYLFLHDELHYWSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYA FT YEVKKKNFLFYPDGVRSEGYEQPLNGGYLLECGKITLVGGTVYKVDILCSKFAHHLVSI FT TRGEAAGPTMRSFGPFEATACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQS FT SMAKLTQLLPCPTGEEIVFVQEFSNLVIATNTVKTMISADRLKIFMGKYLSKLPKILAE FT RFETVKEISLHEFIKNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERF FT GRGEYVAVPDRTSAGYYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIAS FT INEIAAFFRMICAKPFLRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLW FT FRSNYKFYQKFLTAQPDGHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTD FT KPTETCGVHGGARPEAVGGGRKKAESKGSAGGEDPKSDQGEGKAQGEERPVDEAAHGEW FT PFHRPQAYFNEEKGCTHGGSAPCSVVLSIRNDGATRLHKFPNAGPAQNRYAGFYSKNGV FT GYSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGG FT PIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLS FT VTFRLMKQICQDEQKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHGSS FT NSRNKEREQGNDGSDCTNTAESGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCF FT WLDLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASVFSVAI FT KIYQPELSVMTVFEPTKGERVIYLELSGEHFRLMRIINGCVVKAMASALNRKESEVMHV FT IEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEASFEIK FT GDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLADSLC FT SGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINLGR FT KVLYVSPRRALLNEFQRGVCGCSRNQEERKAARKKGQENWDFMTFETFILKCSNLPSGM FT AVVLDEIQLYPPGYLDMICYLTKKGVHLIVAGDPCQSDYDNERDRAWLSTMRSDVEQLL FT DGQSYKFNVQSHRFKNENFRGRLPCEMIESGSVEMLSEEHLLYTGCEELVQIMEEYSRV FT FLVSSFDEKKIIETHFPMDEQRKVYTFGESTGVSFRVGTIIITDVSAATSEKHWLTALS FT RFSENICFVNLLNTDWNGLFELYKHRALGHFLSQRAQLKDLLDHLPGQPQLQSGLSRLI FT GRDAGKRKEKLIGGPLLKCMIVLGRGEDAQEVYLLEEVMQEDLIVTRLHETVLEGVRAR FT GGIKIMSNEAREVRMGDIVSEQFTDDYPKDLGVNLTNAAERFETIYPRHRASDTVTFIM FT AVKKRLRFSRPAVERAKLQEAKLYGKFLLNEFLKKIPLKQAHNAAMMERAKFDFEEKKT FT SKSAATIENHAGRSCRDWLIDVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRF FT APYMRYNEAKLHEVLPSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYV FT VAFELALMEYLGLPRDLIEDYAFIKCHFGSKLGNFAIMRFSGEASTFLFNTMANMLFTF FT LRYNIRDNEHICFAGDDMCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPD FT GIYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCV FT RIIIKNKKLLKSDILGFYSNIEKQI" FT mat_peptide 2260..2525 FT /product="alkylated DNA repair protein" FT mat_peptide 3784..4590 FT /product="viral RNA helicase" FT mat_peptide 4987..6189 FT /product="RNA dependent RNA polymerase" XX SQ Sequence 6287 BP; 1844 A; 1210 C; 1630 G; 1603 T; 0 other; acatacagaa gtccaatgga ggagaatgtt ggtgcatatg actcaagtgt tcaagcagca 60 attgccagca catcagcgaa ttatcacagg gaggcagagg taagcaactt ccagtttttc 120 aattattatc ttcgccccat tgcgaagcgc cacttaattg aagctggtat atacctaagt 180 ccatactcgg cagtaccaca ttcacacgcc gcatgtaaga cccttgagaa ccatctattg 240 tataatgtat taccacccct tgtagacaat agatttcatt ttgtaggaat taaacaatca 300 aagttagaat tccttaaatt aaggaatagt aaattaagta ctatatctaa aataaatagg 360 tttgtgacca gtgccgacaa agcaaggtac ggctctgatt ttgtcaagaa ggtgagtaaa 420 ccacatgtag gatttaagcg tcatgaatta caggtagaga caccaacttt gcgtgatctc 480 ttaccttgtt tgaaggagag agaagctaaa tacctctttc ttcacgatga gttgcattac 540 tggagcaagg aggacttaat cagtttgtta gaagtgctgc agcctgaaat gatgttgggc 600 accatggtgt acccacccga actgctattc ggatctaatc gaagcttgaa cccatggtgt 660 tatgcttatg aggtcaagaa gaaaaatttc cttttttacc ctgatggggt gcggagtgag 720 ggctacgaac agcctttaaa tgggggttac ttgctggaat gtggcaagat taccctagtc 780 ggtggcacgg tgtacaaggt tgatatccta tgcagtaaat tcgcgcacca cttggtttcc 840 ataacgcgtg gagaagctgc agggccgact atgcgctcat ttgggccctt cgaagcgacg 900 gcgtgcaatg gcttggatcc cctcactaga gacgtgtcct gtagcttccc aattccctat 960 gaggtagttt ctaaagttta caggtatctg aagaccctca ggaagcccga tgaacaatcc 1020 tccatggcga aactcacaca actacttcct tgccctacag gcgaggaaat cgttttcgtg 1080 caggaattct caaatcttgt gatcgccacc aacacagtga aaaccatgat tagtgcagac 1140 aggcttaaga tcttcatggg caagtacttg agtaagctgc caaagatcct ggctgaacga 1200 ttcgaaacag ttaaagaaat aagtctgcat gaattcatca agaatcttga gccattcaca 1260 gtcgacgtgc aattaaaaga actcaagtgg aataatgtat ggactcttga gttgaaggat 1320 gatgggctcg ctgacgagtt tttagatcct gttaggatga tcgaagaaag gttcggccgt 1380 ggagaatacg tcgcagtgcc tgacagaaca agtgccggtt attaccttgc caagccaagc 1440 ctggccaaac tgcggggtcc tctgatcgag attgagcaaa gagtgctcag gatcacgtta 1500 gctgctattt gttacaagag tttgagtaat agtgatggca ccatcgcttc aatcaacgaa 1560 atagctgctt tctttaggat gatatgcgcc aagcctttct tacgtccggc aaaatacaag 1620 gtttacgatc tctatggaga agggggagct ataggtctac aaaaatacat gagaagtcgt 1680 tgggcgcatc acgttaggtt ctactgggca aacatcggac tattgtggtt tagaagtaac 1740 tacaaatttt accagaagtt tttgaccgcg caacccgatg gccacggcac ttacaagagt 1800 ttaatgcacc catggagtaa ggtaatgcat gaagtgacca atcaccaatt ccactcaagt 1860 aaaacgagta attactcatg gctcaggtgt gagcgcagca ctgataaacc gactgaaacc 1920 tgcggagtgc atggaggggc tagaccagaa gcagtgggcg gtggtaggaa gaaagcagaa 1980 agtaagggca gcgccggtgg agaagatcca aaaagtgatc agggcgaagg taaggcccaa 2040 ggggaagaga gacccgtgga tgaagctgct catggcgaat ggcccttcca caggccgcag 2100 gcgtacttta atgaagaaaa agggtgcaca cacggtggca gtgccccttg cagtgtcgtt 2160 ttgagcatcc gaaatgatgg agctacacgt ctccataaat tcccaaacgc cggaccggct 2220 caaaataggt acgccggttt ttactctaaa aatggcgtag ggtactcgta taatggagga 2280 gagcaccaaa gcctaaactg gcctggctgg atcagtgttt ggatgagact tgttggtata 2340 cctgaaattt ataactgctg tttggtgcaa cgttacgacg agaatgcaaa aattgggatg 2400 cacagtgatg atgaggaatg ttttgtcacc ggcggtccca tatacaccgt taatattgag 2460 gggcgcgcca ctttcatgac cacctgcaag gaaggaaaga ctaaagaaat tacaagtttt 2520 gaactaggac ccggagactt gttcgagatg cccgggggct tccaggagac tcataaacat 2580 gctgtatttg agactagcaa agacaggctt tccgtgacat ttagactaat gaaacaaatc 2640 tgccaagatg aacagaaaga tcacgaagag acagacacaa gtggtggaaa aaaagctggg 2700 gaggcagaag agacagagca gccgaacacc gaaaaagaaa atccagatga agaaggtgct 2760 gggaacgagg aaggtgagca tgggagttca aacagcagaa acaaggagcg agaacaagga 2820 aacgacggta gcgattgcac aaatactgct gaatccgggg ccgaagcttt taccaggcat 2880 tttaatggct gcaaggtgag cgtgcacgca gaaaaactcc catacacgta caatactacc 2940 gattgcggcg gtaatggaaa ctgcttctgg cttgatttag ctaatgaatt gggcctgtgc 3000 cctttcaggg gaaagaaact ggccttggag tacgacctgg gttcagcagg ggcaaatgag 3060 actgcgcgca gttgcgctgg agagggagtg tacgctgtag atgaagccat tgcatgtgcg 3120 gcaagtgtat tcagtgtcgc catcaaaata taccagcctg agttgagtgt catgaccgtt 3180 tttgaaccga ctaaaggaga gcgagtgatt tatttagaat taagcgggga gcacttcaga 3240 ctcatgcgta taatcaatgg atgtgtagtc aaagctatgg cttctgcact caatcgcaaa 3300 gaaagtgagg taatgcatgt gatcgaagaa aattgtgatc caatgatggt gacgagcctt 3360 tggaatggtg aaggtgttga cttaggtgtt ttccattcac tgctggaact tttctcgatt 3420 aaagctttga tttttgaggg atcaagggaa gtgctgtaca acagggaagg acgttttgaa 3480 gcttcttttg aaataaaagg tgaccatata gaacacgtgc ataggaaaaa aggggcttgc 3540 aatgcactgt ttgaagagtg tggcaagact cacgaggtga aggcagaatc tctagagcta 3600 ctaaatagag caggtacttt gcttaattac gagagtaccc ttgctagagc taggagactc 3660 gcagatagtt tgtgttccgg aacaacgggt gtcgtgagct cttctttgtt caacaaaaaa 3720 ccaaaccttt tcccggtcca atttagggag aaaaatgagt cgctcagtag ggatgtgctt 3780 gcagtgattg gcaccttggg atcgggcaag agcacgattc tcaaaaactt cttcaaaatc 3840 aatttgggtc gcaaggtgtt gtacgtatcc ccacgtagag cccttttgaa tgaattccag 3900 agaggcgtct gtggttgctc aagaaatcaa gaagaacgca aagcggcccg gaagaaaggc 3960 caggagaatt gggacttcat gacttttgag accttcatac tcaaatgttc taatttacct 4020 tcagggatgg ctgtcgtact tgatgagata cagctgtacc cacctggata cctggacatg 4080 atctgctatc tgacaaaaaa gggcgtgcac ttaattgttg ctggggatcc ttgccagagt 4140 gattatgata atgagcgtga tcgtgcatgg ttaagtacga tgaggagtga tgttgagcaa 4200 ctgcttgatg gtcaaagtta taaatttaac gtgcagagtc atcgcttcaa aaatgagaat 4260 tttaggggcc gtctaccctg tgaaatgatt gaaagtggat ctgtggagat gctgtcagag 4320 gagcatctgc tgtatacggg gtgtgaagag ctggtgcaga tcatggaaga gtacagtagg 4380 gttttcctcg tttcatcctt cgatgaaaag aaaattattg agacccattt ccctatggat 4440 gaacagcgga aagtatacac tttcggtgag tccacaggtg tgagtttcag ggtgggaaca 4500 ataatcatta cagacgtttc agccgccact tccgaaaaac attggttgac agccctgagt 4560 cgctttagtg aaaatatctg tttcgtcaat ctcctgaata ctgactggaa tggtctcttt 4620 gagttgtaca aacaccgagc cttggggcac tttctaagcc agcgagcgca attaaaagac 4680 ctactggatc atctacctgg tcaaccacag ttgcagagtg gactgtcaag gttgataggt 4740 agggatgcag gcaaaagaaa ggaaaagctc atcggtggtc ccttgctcaa gtgtatgatc 4800 gttctcggtc ggggtgaaga tgcacaggaa gtgtatctcc ttgaggaggt tatgcaggag 4860 gacctgatcg tgactcgcct gcacgagact gttcttgaag gtgtacgtgc aagagggggc 4920 ataaagataa tgtccaacga agcaagggaa gtgcggatgg gtgatattgt ttctgagcaa 4980 tttactgacg attatcccaa agatttgggg gttaacctca cgaatgcagc tgagcgtttt 5040 gagaccatct accctaggca tcgggcttca gatacagtaa catttataat ggctgttaag 5100 aaaagattga ggttttcacg tcctgccgtt gaaagagcga agcttcagga ggccaaattg 5160 tacgggaaat ttcttcttaa cgaattcctt aaaaaaattc cattaaagca agcacataat 5220 gcagccatga tggagcgcgc gaagtttgat tttgaagaga agaaaacgag taagagcgcg 5280 gcgactatag agaatcatgc aggccggtcg tgtagggatt ggttaataga tgtgggattg 5340 atcttctcca aaagtcaact gtgcacaaag tttgataata gatttagagt cgcaaaagca 5400 gctcagagca tagtttgctt tcaacatgct gtactttgtc gtttcgcgcc ctacatgcgt 5460 tataatgagg cgaaacttca tgaagtcctg cccagcagat tctacataca ctcagggaag 5520 gggttagaag agcttaatga gtgggtcatt aaaggtaagt tcgagggcat ttgcactgag 5580 tcagattatg aggccttcga tgcttcgcaa gatcagtacg ttgttgcttt tgagttggct 5640 ctgatggagt acttagggtt accaagggac ttaatcgagg attatgcttt catcaagtgc 5700 cattttgggt ccaagttagg caatttcgct atcatgcggt tttctgggga agccagtact 5760 ttcttgttca acacgatggc taacatgcta ttcaccttct tgcgttacaa cattagagat 5820 aatgagcaca tttgcttcgc aggagatgac atgtgtgcct cagagcgcct ctgcatcaaa 5880 aaagagcatg agggtttctt gaataagctg aaattgaaag ctaaagtgtt ttttgttgat 5940 aaaccgactt tctgtggatg gcacctatgt ccggacggta tatataagaa gcctcaatta 6000 gtgctagagc gcatgtgtat tgctaaggag aaaaataatc ttgccaattg tttagataat 6060 tacgcaattg aggtctctta cgcatacaaa cttggtgaac gggctgtgaa taggatggat 6120 gaggaagagt tggaagcggc ctacaactgt gtccggataa ttatcaaaaa taagaagctc 6180 ttaaagtccg atattctcgg tttttattcc aacatcgaaa aacaaattta aatacgctta 6240 ggttgtagct ataggattgt tatatggatg tgttagttaa tttgttg 6287 //