ID AM282556; SV 1; linear; genomic RNA; STD; VRL; 6284 BP. XX AC AM282556; XX DT 19-JUN-2006 (Rel. 88, Created) DT 19-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Chrysanthemum virus B mRNA for polyprotein, isolate Uttaranchal INDIA XX KW alkylated DNA repair protein; polyprotein; RNA dependent RNA polymerase; KW viral RNA helicase. XX OS Chrysanthemum virus B OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-6284 RA Singh L.; RT ; RL Submitted (17-JUN-2006) to the INSDC. RL Singh L., Plant Virus Lab Floriculture Division, Institute of Himalayan RL Bioresource Tech., P.O. Box - 6, Palampur, Distt. Kangra, Himachal Pradesh RL 176 061, INDIA. XX RN [2] RA Singh L., Hallan V., Ram R., Zaidi A.A.; RT "Molecular characterization of genomic RNA of Chrysanthemum virus B"; RL Unpublished. XX DR MD5; b1d060a0868ff5ba667afba77ca39a71. XX FH Key Location/Qualifiers FH FT source 1..6284 FT /organism="Chrysanthemum virus B" FT /host="Chrysanthemum" FT /isolate="Uttaranchal" FT /mol_type="genomic RNA" FT /country="India:Uttaranchal" FT /db_xref="taxon:12165" FT CDS <1..6228 FT /product="polyprotein" FT /db_xref="GOA:Q17UV1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q17UV1" FT /protein_id="CAK54343.1" FT /translation="TYRSPMEENVGAYDSSVQAAIASTSANYYREAEVSNFQFFNYYLR FT PIGKRHIIEAGIYLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEF FT LKLRNSKLSTISKINRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPC FT LKEREAKYLFLHDELHYLNKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYA FT YEVKKKNFLFYPDGVRSEGHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSI FT TRGEAAGPTMRSFGPFNNGVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQS FT SMAKLTQLLPCPTGEEIVFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKI FT LADVFETVLEISLHEFIKNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIE FT ERFGRGEYVAVPDRTSAGYYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGT FT IASINEIAAFFRMICAKPFLRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIG FT LLWFRSNYKFYQKFLTAQPDGHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCER FT STDKPTETCGVHGGARSGRVVGRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGG FT CPPQPQAYSNEEKGAHTVQCPCSVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVG FT YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGP FT IYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSV FT TFRLMKQICQDEQKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHGSSN FT SRNKEREQGNDGSDCTNTAESGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFW FT LCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIK FT IYQPELSVMTVFEPTKGERVIYLELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVI FT EENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEASFEIKG FT DHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLADSLCS FT GTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINLGRK FT VLYVSPRRALLNEFQRGVCGCSRNQEERKAARKKGQENWDFMTFETFILKCSNLPSGMA FT VVLDEIQLYPPGYLDMICYLTKKGVHLIVAGDPCQSDYDNERDRAWLSTMRSDVEQLLE FT GQSYKFNVQSHRFNNENFRGRLPCEITGKEVAESLSEEHLLYTGCEELVQIMDEYSKIF FT LVSSFEEKKIIETHFPISEQRKVYTFGESTGLNFKVGTIIITNVSAATSEKRWLTALSR FT FSENICFVNLLGTDWNGLFGLYKHRALGRFLSKQAQLKDLLDHLPGQPQFQNGLSTLIG FT RDAGKRKEKLLGDPWLKCMIDLGQAEDAEEVELLEEVMQEEWFKTHLPQADLEGVRARW FT VHKIMLKEAREVRMGNMVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMA FT VKKRLRFSRPAVEKAKLQEAKLYGKFLLNEFLKKVSLKQAHNTTMMERAKFDFEEKKTS FT KSAATIENHAGRSCRDWLIDVGLIFSKSQLCTKFDNRFRIAKAAQSIVCFQHAVLCRFA FT PYMRYIEAKLHEVLPSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYIV FT AFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFL FT RYNIRDSEHICFAGDDLCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDG FT IYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVR FT IIIKNKKLLKSDILGFYSNIEKQI" FT mat_peptide 2257..2622 FT /product="alkylated DNA repair protein" FT mat_peptide 3781..4587 FT /product="viral RNA helicase" FT mat_peptide 5050..6186 FT /product="RNA dependent RNA polymerase" XX SQ Sequence 6284 BP; 1860 A; 1230 C; 1613 G; 1581 T; 0 other; acatacagaa gtccaatgga ggagaatgtt ggagcatatg actcaagtgt tcaagcagca 60 attgccagca catcagcgaa ttattacagg gaggcagagg taagcaactt ccagtttttc 120 aattattatc ttcgccccat tgggaagcgc cacataattg aagctggtat atacctaagt 180 ccatactcgg cagtaccaca ttcacacgct gcatgtaaga cccttgagaa ccatctattg 240 tataatgtat taccacccct tgtagacaat agatttcatt ttgtaggaat taaacaatca 300 aagttagaat tccttaaatt aaggaatagt aaattaagta ctatatctaa aataaatagg 360 tttgtgacca gtgccgacaa agcaaggtac ggctctgatt ttgtcaagaa ggtgagtaaa 420 ccacatgtag gatttaagcg tcatgaatta caggtagaga caccaacttt gcgtgatctc 480 ttaccttgtt tgaaggagag agaagctaaa tacctctttc ttcacgatga gttgcattac 540 ttgaacaagg aggacttaat cagtttgtta gaagtgctgc agcctgaaat gatgttgggc 600 accatggtgt acccacccga actgctattc ggatctaatc gaagcttgaa cccatggtgt 660 tatgcttatg aggtcaagaa gaaaaatttc cttttttacc ctgatggggt gcggagtgag 720 ggccatgaac agcctttaaa tgggggttac ttgctggaat gtggcaagat taccctagtc 780 gatggcacgg tgtacaaggt tgatatccta tgcagtaaat tcgcgcacca cttggtttcc 840 ataacgcgtg gagaagctgc agggccgact atgcgctcat ttgggccctt caacaacggc 900 gtgcatgggc ttggatcccc ccacacaaga gacgtgtcct gtagcttccc aattccctat 960 gaggtagttt cgaaggttta caggtatttg aagaccctca ggaagcccga tgaacaatcc 1020 tccatggcga aactcacaca actacttcct tgccctacag gcgaggaaat cgttttcgtg 1080 caggaaattc tcaaatcttg tgatcgccac caacacagtg aaaaccatgg attagtgcag 1140 acagggctta agatcttcat ggggcaagtt actttggagt taagctgccc aaagatcttg 1200 gctgacgttt tcgaaacagt tttagaaata agtctgcatg aattcatcaa gaatcttgag 1260 ccattcacag tcgacgtgca attaaaagaa ctcaagtgga ataatgtatg gactctagag 1320 ttaaaggatg atgggctcgc tgacgagttt ttagatcctg ttaggatgat cgaagaaagg 1380 ttcggccgtg gagaatacgt cgcagtgcct gacagaacaa gtgccggtta ttaccttgcc 1440 aagccaagcc tggccaaact gcggggtcct ctgatcgaga ttgagcaaag agtgctcagg 1500 atcacgttag ctgctatttg ttacaagagt ttgagtaata gtgatggcac catcgcttca 1560 atcaacgaaa tagctgcttt ctttaggatg atatgcgcca agcctttctt acgtccggca 1620 aaatacaagg tttacgatct ctatggagaa gggggagcta taggtctaca aaaatacatg 1680 agaagtcgtt gggcgcatca cgttaggttc tactgggcaa acatcggact attgtggttt 1740 agaagtaact acaaatttta ccagaagttt ttgaccgcgc aacccgatgg ccacggcact 1800 tacaagagtt taatgcaccc atggagtaag gtaatgcatg aagtgaccaa tcaccaattc 1860 cactcaagta aaacgagtaa ttactcatgg ctcaggtgtg agcgcagcac tgataaaccg 1920 actgaaacct gcggagtgca tggaggggct agatcagggc gggtggtagg aagaaaagca 1980 gaaagtaagg gcagcgccgg tggagaagat ccaaaaagtg atcagggcga aggtaaggac 2040 caaggggaag agagacccgt ggatgaagct gctcatggcg gatgccctcc acagccgcag 2100 gcgtactcta atgaagaaaa aggtgcacac acggtgcagt gcccttgcag tgtcgttttg 2160 agcatccgaa atgatggagc tacacgtctc cataaattcc aaacgccgga ccggctcaaa 2220 aataggtacg ccggttttta ctctaaaaat ggcgtagggt actcgtataa tggaggagag 2280 caccaaagcc taaactggcc tggctggatc agtgtttgga tgagacttgt tggtatacct 2340 gaaatttata actgctgttt ggtgcaacgt tacgacgaga atgcaaaaat tgggatgcac 2400 agtgatgatg aggaatgttt tgtcaccggc ggtcccatat acaccgttaa tattgagggg 2460 cgcgccactt tcatgaccac ctgcaaggaa ggaaagacta aagaaattac aagttttgaa 2520 ctaggacccg gagacttgtt cgagatgccc gggggcttcc aggagactca taaacatgct 2580 gtatttgaga ctagcaaaga caggctttcc gtgacattta gactaatgaa acaaatctgc 2640 caagatgaac agaaagatca cgaagagaca gacacaagtg gtggaaaaaa agctggggag 2700 gcagaagaga cagagcagcc gaacaccgaa aaagaaaatc cagatgaaga aggtgctggg 2760 aacgaggaag gtgagcatgg gagttcaaac agcagaaaca aggagcgaga acaaggaaac 2820 gacggtagcg attgcacaaa tactgctgaa tccggggccg aagcttttac caggcatttt 2880 aatggctgca aggtgagcgt gcacgcagaa aaactcccat acacgtacaa tactaccgat 2940 tgcggcggta atggaaactg cttctggctt tgcttagcta atgaattggg cctgtgccct 3000 ttcaggggaa agaaactggc cttggagtac gacctgggtt cagcaggggc aaatgagact 3060 gcgcgcagtt gcgctggaga gggagtgtac gctgtagatg aagccattgc atgtgcggca 3120 agtgtattca gagtcgccat caaaatatac cagcccgagt tgagtgtcat gaccgttttt 3180 gaaccgacta aaggagagcg agtgatttat ttagaattaa gcggggagca cttcagactc 3240 atgcgtataa tcaatggatg tgtagtcaaa gctatggctt ctgcactcaa tcgcaaagaa 3300 agtgaggtaa tgcatgtgat cgaagaaaat tgtgatccaa tgatggtgac gagcctttgg 3360 aatggtgaag gtgttgactt aggtgttttc cattcactgc tggaactttt ctcgattaaa 3420 gctttgattt ttgagggatc aagggaagtg ctgtacaaca gggaaggacg ttttgaagct 3480 tcttttgaaa taaaaggtga ccatatagaa cacgtgcata ggaaaaaagg ggcttgcaat 3540 gcactgtttg aagagtgtgg caagactcac gaggtgaagg cagaatctct agagctacta 3600 aatagagcag gtactttgct taattacgag agtacccttg ctagagctag gagactcgca 3660 gatagtttgt gttccggaac aacgggtgtc gtgagctctt ctttgttcaa caaaaaacca 3720 aaccttttcc cggtccaatt tagggagaaa aatgagtcgc tcagtaggga tgtgcttgca 3780 gtgattggca ccttgggatc gggcaagagc acgattctca aaaacttctt caaaatcaat 3840 ttgggtcgca aggtgttgta cgtatcccca cgtagagccc ttttgaatga attccagaga 3900 ggcgtctgtg gttgctcaag aaatcaagaa gaacgcaaag cggcccggaa gaaaggccag 3960 gagaattggg acttcatgac ttttgagacc ttcatactca aatgttctaa tttaccttca 4020 gggatggctg tcgtacttga tgagatacag ctgtacccac ctggatacct ggacatgatc 4080 tgctatctga caaaaaaggg cgtgcactta attgttgctg gtgatccttg ccagagtgat 4140 tatgataatg agcgcgatcg tgcatggtta agcacgatgc ggagtgatgt agagcaattg 4200 cttgaaggcc aaagctataa gttcaatgtg cagagccatc gcttcaataa cgaaaacttt 4260 agggggagac tgccctgtga gataactggg aaggaggttg ctgaatcact ctcggaagaa 4320 catttgttgt acacagggtg tgaggagcta gtgcagatca tggatgagta tagcaagatc 4380 ttcctcgtct catcattcga ggaaaagaaa atcatcgaga cccatttccc cataagtgag 4440 cagcggaaag tgtatacgtt tggagaatcc actggtttga acttcaaagt cggtaccata 4500 atcatcacaa atgtttctgc tgctacctca gagaagcgct ggttaactgc tctaagtcgt 4560 tttagtgaaa acatctgctt tgttaacctt cttgggactg attggaatgg cctctttggc 4620 ctgtacaagc atcgagcttt agggcgcttc cttagcaagc aagcgcaatt aaaagaccta 4680 ctggatcatc tccctggtca accacagttt cagaatggac tctcaacgtt gataggtagg 4740 gatgcaggga aaagaaagga aaagctcctc ggtgatccct ggctcaagtg tatgatcgat 4800 ctcggtcagg ctgaagatgc agaggaagtt gagctccttg aggaggttat gcaggaggag 4860 tggttcaaga ctcacctacc ccaggctgat ctggaaggtg tacgtgcaag gtgggtacac 4920 aagataatgc ttaaagaagc aagggaagtg agaatgggta atatggtgtc tgaacaattc 4980 acagatgatt atcccaaaga attgggcact aacctcacga atgctgctga acggttcgag 5040 accatctatc ctaggcatag agcttcagat accgtaacct tcataatggc cgttaaaaaa 5100 agattgaggt tttcacgtcc ggctgtcgag aaagcaaaac ttcaggaggc caaactgtat 5160 gggaagttcc ttctgaatga atttcttaag aaggtgtcgt tgaagcaggc ccataacacc 5220 accatgatgg agcgcgcgaa gtttgatttt gaggagaaga aaacgagcaa aagtgcggct 5280 accatagaga atcatgctgg ccgctcatgc agggattggt taatagatgt tggactaatc 5340 ttctcaaaaa gccaactgtg cacgaaattt gataataggt ttagaattgc aaaggcagct 5400 cagagtatag tttgctttca acatgctgta ctctgtcgtt tcgcgcccta catgcgttat 5460 attgaggcga agcttcatga ggtcctgccc agcagattct acatccactc agggaagggt 5520 ctagaagaac ttaatgaatg ggttattaag ggtaagttcg agggcatttg cacagagtca 5580 gattatgaag ccttcgatgc ttcgcaggat cagtacatag tcgcttttga attggctcta 5640 atggagtacc tagggttacc aagggaccta atcgaggatt atgcattcat caagtgccat 5700 ttggggtcta agttaggcaa cttcgccatc atgcggtttt ctggggaagc tagtaccttc 5760 ttgtttaaca caatggccaa catgctattc actttcttgc gctacaacat tagagatagt 5820 gagcacattt gctttgcagg ggatgatttg tgtgcttctg agcgcctatg catcaagaaa 5880 gagcatgagg gcttcttgaa taaattaaaa ctgaaggcta aagtgttctt tgtggataag 5940 cctactttct gtggatggca cctatgtccg gacggcatat ataagaagcc tcaattagtg 6000 ctagagcgta tgtgtattgc taaggaaaag aataatttgg ccaattgttt ggacaattat 6060 gcaattgagg tctcttacgc atacaaactt ggcgaacggg ctgttaatag gatggacgaa 6120 gaagaattgg aagcagccta caactgtgtc cggataatca tcaagaataa aaagctccta 6180 aagtctgaca tactcgggtt ttattccaac attgaaaaac aaatttaaat acgcttaggt 6240 tgtagctata ggattgttat atggatgtgt tagttaattt gttg 6284 //