ID AM259382; SV 1; circular; genomic DNA; STD; VRL; 2753 BP. XX AC AM259382; XX DT 19-JUN-2006 (Rel. 88, Created) DT 07-MAR-2007 (Rel. 90, Last updated, Version 2) XX DE Sida yellow vein Madurai virus complete genome, from Madurai, India XX KW c1 gene; c2 gene; c3 gene; c4 gene; v1 gene; v2 gene; complete genome. XX OS Sida yellow vein Madurai virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2753 RA Usha R.; RT ; RL Submitted (19-APR-2006) to the INSDC. RL Usha R., Plant Biotechnology, Madurai Kamaraj University, School of RL Biotechnology, Madurai, Tamil Nadu, 625021, INDIA. XX RN [2] RA Kasin Y.A., Gopal P., Sinilal B., Usha R.; RT "Molecular characterization of the genomic components associated with RT yellow vein disease of Sida cardifolia."; RL Unpublished. XX DR MD5; c1caf7d868546c052e3277f79cd7ceb5. XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Sida yellow vein Madurai virus" FT /mol_type="genomic DNA" FT /country="India:Madurai" FT /isolation_source="diseased plant leaves" FT /db_xref="taxon:420255" FT CDS 136..597 FT /gene="v2" FT /product="V2 protein" FT /function="precoat protein" FT /db_xref="GOA:Q17ZR2" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:Q17ZR2" FT /protein_id="CAJ90735.1" FT /translation="MWDPLENEFPETVHGFRYMLAVKYMQEIAKSTSLVHWFRVRSGSH FT FRVEVQGLCSSVLQVWRFPLQFLPRVEGSTSTVLAHQLLLPLLPQAQGEEDGPTGPCIE FT SPDFTECIERLMSLRAVKAHVRYSPSMLKTILVTWVRLSVYLMLLEVLG" FT CDS 294..1079 FT /gene="v1" FT /product="V1 protein" FT /function="coat protein" FT /db_xref="GOA:Q17ZR1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q17ZR1" FT /protein_id="CAJ90736.1" FT /translation="MFKRPASMAFSSPISSARRRFNFDSPRPSIAAALTAPGTRRRRWT FT NRPMYRKPRFYRMYRTPDVPKGCEGPCKVQSFDAKDDIGHMGKVICLSDVTRGTGLTHR FT VGKRFCVKSIYFVGKIWIDENIKVKNHTNTVMFWVVRDRRPTGTPLDFQQVFNVYDNEP FT AMLLSRTTSVIVFRFYEGFMQRSPEGNMQLRSRRLSESSIVLTIMLFTTTRRRQSMRTT FT PRMLCYCTWHVLMPLTQCMRLLNVEVISTILSAIKINKV" FT CDS complement(974..1468) FT /gene="c3" FT /product="C3 protein" FT /function="replication enhancer" FT /db_xref="GOA:Q17ZR0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q17ZR0" FT /protein_id="CAJ90737.1" FT /translation="MDSRTGEYITAAQATRAIYWDMAIPLYFKILDPPGQAVQPQPRHH FT YSPTQVNHNLRKALGVHKCFITFRIWTRLHPQTMAFLEGLTQSSSWVLRQIRSYLHKQC FT NYGFRSCTVGCNSGHNSSATNSVNKIQTLLILIADRIVEITSTFKSRIHWVRGMSTCHV FT Q" FT CDS complement(1221..1613) FT /gene="c2" FT /product="C2 protein" FT /function="transactivator" FT /db_xref="GOA:Q17ZQ9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q17ZQ9" FT /protein_id="CAJ90738.1" FT /translation="MRRSLPSERLSTQVPIKVEHQKAKRKIRRKRVDLDCGCTYYRSLN FT CHNHGFTHRGIHHCSSSDEGDLLGHGNSPIFQDPRPTWTGRSTATTTSLQSNSGQPQPE FT ESLGGSQMFHNLPDLDSFTSSDNGVS" FT CDS complement(1517..2602) FT /gene="c1" FT /product="C1 protein" FT /function="replicase" FT /db_xref="GOA:Q17ZQ8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="UniProtKB/TrEMBL:Q17ZQ8" FT /protein_id="CAJ90739.1" FT /translation="MAPSKRFNIYCKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKYIK FT VCKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEIQIDGRSARGGQQTANDAYPPQRFTQAVSQRLLQYLENYPLRIMFYNF FT IIYMLIYIGFSHLLWRFIFLLFLLLLSIKFPTNLKSGRVRMSWRPLRGLGGPSVLWLKV FT TVERGRRCGPGHWVHIIISVGIWTSAQRYTVTTLGTTSLMTLIPIISNTLKSLWGPRET FT GKAIPSTASQFKLKAGFQQSSFAIQGPIPAIKNSWTRKRIPLSRPGHFKCVVRYPRRGS FT LLRCPSKSSIRRRRGKYAGRG" FT CDS complement(2149..2445) FT /gene="c4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q17ZQ7" FT /protein_id="CAJ90740.1" FT /translation="MGNLICTCLSSSRGNTSARISDSSTWSPQTDQHISIRTFRELNQA FT QTSSPTSTRTETPSNGERFRSTEDLQEEDSRQQTTLTRRSASHRQLARGSYST" XX SQ Sequence 2753 BP; 688 A; 605 C; 662 G; 798 T; 0 other; accggatggc cgcgcgattt ttaaaagtgg tcccccccac gattttatgt cccccaacca 60 gaaggcgcgc tcaaagttta attatttttt ccctccctat ataagacttc cccttggaag 120 ttttggggtt taaatatgtg ggacccttta gagaacgagt tccctgaaac cgttcacggt 180 ttccgttata tgctcgctgt gaaatatatg caggagattg ccaagagtac gagcctagta 240 cattggtttc gagtacgttc gggatctcat ttccgtgttg aggtgcaagg attatgttca 300 agcgtcctgc aagtatggcg ttttcctctc caatttcttc cgcgcgtcga aggttcaact 360 tcgacagtcc tcgcccatca attgctgctg cccttactgc cccaggcaca aggagaagaa 420 gatggaccaa caggcccatg tatcgaaagc ccagatttta cagaatgtat cgaacgcctg 480 atgtccctaa gggctgtgaa ggcccatgta aggtacagtc cttcgatgct aaagacgata 540 ttggtcacat gggtaaggtt atctgtttat ctgatgttac tagaggtact gggctgaccc 600 acagggtggg taagcgtttc tgtgtaaagt caatctattt cgtagggaaa atatggatag 660 acgagaacat caaggtgaag aaccacacga ataccgttat gttttgggtt gtcagggatc 720 ggcgtcccac tggaacgccg ttggattttc aacaggtgtt taatgtgtac gataacgagc 780 ctgctatgct actgtcaaga acgaccagcg tgatcgtttt caggttttac gaaggtttca 840 tgcaacggtc accggagggc aatatgcagc taaggagtcg gcgattatca gaaagttcta 900 tcgtgttaac aattatgttg tttacaacca ccaggaggcg gcaaagtatg cgaaccacac 960 cgagaatgct ttgttattgt acatggcatg tactcatgcc tctaacccag tgtatgcgac 1020 ttttaaatgt agaagttatt tctacgattc tgtcagcaat taaaattaat aaagtttgaa 1080 ttttattgac tgagtttgtt gcacttgaat tgtgccccga attacatcct acagtacatg 1140 atctaaagcc ataattacat tgtttatgca aataactccg aatctgtcga agtacccaag 1200 aacttgattg cgtaagaccc tcaagaaacg ccattgtctg aggatgtaaa cgagtccaga 1260 tccggaaggt tatgaaacat ttgtgaaccc ccaaggcttt cctcaggttg tggttgacct 1320 gagttggact gtaatgatgt cgtggttgcg gttgaacggc ctgtccaggt gggtctagga 1380 tcttgaaata taggggaatt gccatgtccc agtaaatcgc cctcgtcgct tgagctgcag 1440 tgatgtattc ccctgtgcgt gaatccatgg ttgtgacagt tgaggctgcg ataataggtg 1500 catccgcagt caaggtctac cctcttcctg cgtattttcc tcttcgcctt ctgatgctcg 1560 actttgatgg gcacctgagt agagagcctc tccgagggta acgaacgacg catttaaagt 1620 gcccaggcct tgaaagcgga attcttttcc tcgtccagga attctttata gctggaattg 1680 ggccctggat tgcaaaggaa gattgttgga atcccgcctt taatttgaac tggcttgccg 1740 tacttggtat tgctttgcca gtctctctgg gcccccataa actctttaaa gtgtttgaga 1800 taatggggat caacgtcatc aatgacgttg taccaagcgt cgttactgta tacctttggg 1860 ctgaggtcca gatgcccaca gagataatta tgtggaccca atgacctggc ccacatcgtc 1920 ttccccgttc gactgtcacc ttcaaccaca aaactgaagg gcctccgagg ccgcgcagcg 1980 gccgccacga cattctcaca cgcccactct tcaagttcgt cgggaacttg atcgaaagaa 2040 gaagaagaaa aaggagaaat ataaacctcc aaaggaggtg tgaaaatcct atgtagatta 2100 gcatataaat tatgaaattg taaaacataa tccttagggg gtagttctct aagtactgta 2160 agagcctctg gctaactgcc tgtgtgaagc gctgcggcgg gtaagcgtcg tttgctgtct 2220 gctgtcctcc tcttgcagat cttccgtcga tctgaatctc tccccattcg agggtgtctc 2280 cgtccttgtc gatgtaggac ttgacgtctg agcttgattt agctccctga atgttcggat 2340 ggaaatgtgc tgatctgttt ggggagacca agtcgaagaa tcgctgattc tggcacttgt 2400 atttcccctc gaactggata agcacgtgca gatgaggttc cccattctcg tgaagctctt 2460 tgcagacttt gatgtatttt ttatttgttg gggtttgtag gttttggatt tgggaaagtg 2520 cctcttcttt agttagagag catttgggat aagtgaggaa atagtttttg caatagatgt 2580 taaagcgttt agagggagcc attttggtca atgatcaccg attgactcgc tcttgcaact 2640 ctctctggta ttttggtgat caatatatag tgatcaccga atgacattat tcgtaaattc 2700 ccatagaaat tcaaactccc tcgcgctcca aaagcggcca tccgtataat att 2753 //