ID AM258977; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AM258977; XX DT 10-JAN-2009 (Rel. 98, Created) DT 10-JAN-2009 (Rel. 98, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus, complete genome, clone ToA2 XX KW CP gene; AC5 gene; AV2 gene; AV3 gene; REn gene; Rep gene; TrAP gene; KW coat protein; complete genome; replication enhancer protein; KW replication associated protein; transcription activator protein. XX OS Tomato leaf curl New Delhi virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2739 RA Tahir M.; RT ; RL Submitted (08-APR-2006) to the INSDC. RL Tahir M., School of Biological Sciences, University of the Punjab, Lahore, RL Punjab, PAKISTAN. XX RN [2] RA Tahir M., Haider M.S., Briddon R.W.; RT "Diversity of begomovirus in Punjab, Pakistan"; RL Unpublished. XX DR MD5; d9e29b1a850b996be7074acc518b93f7. XX CC No associated satellite DNA beta molecule XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Tomato leaf curl New Delhi virus" FT /segment="DNA-A" FT /host="Lycopersicon esculentum (tomato)" FT /mol_type="genomic DNA" FT /country="Pakistan:Punjab, Lahore" FT /collection_date="02-Jun-2004" FT /clone="ToA2" FT /note="from leaves" FT /db_xref="taxon:223347" FT CDS 41..427 FT /gene="AV3" FT /product="AV3 protein" FT /db_xref="UniProtKB/TrEMBL:B7ZDJ5" FT /protein_id="CAJ90650.1" FT /translation="MKFTLHGLFSAWGPINRLAHQVWIHKHVGSIIARISRKRSWSEVH FT ASCKISPRDRKDLFPRHSRLRSCPRSHSCSPGKELWRSDQQISSFQLPHRKYADVSTST FT APMELVQLVPLPASQKQRPGPTGR" FT CDS 120..458 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:B7ZDJ6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B7ZDJ6" FT /protein_id="CAJ90651.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLQEIEKTYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHHFNSRIESTPTSQLRQPLWSSCSWSHCPRHKSKGLDQQADEQ FT KTQNVQNV" FT CDS 280..1050 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:B7ZDJ7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B7ZDJ7" FT /protein_id="CAJ90652.1" FT /translation="MAKRPADIIISTPASKVRRRLNFDSPYGARAVGPIARVTKAKAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B7ZDJ8" FT /protein_id="CAJ90653.1" FT /translation="MHVLHRCCARFIVKHIKHFPEILGRSCRTTVTNQKKHDTVSMVFC FT LDVFIHPYLSQHIDGFHTETLPYAMCESSSSGNITNTHDFANMRDIVPRFKGLHFTRAF FT TAPWHVGTSIHSVHSGFSVHRPVGPGLCFCDAGNGTNCTSSIGAVEVETSAYFRCGS" FT CDS complement(1047..1457) FT /gene="REn" FT /product="replication enhancer protein" FT /function="up-regulation in viral DNA replication" FT /db_xref="GOA:B7ZDJ9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B7ZDJ9" FT /protein_id="CAJ90654.1" FT /translation="MITDSRTGEYITADRAESGVYTWEIRNPLYFKILKHDSRPFLTQH FT DIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFRTQVLRYLDMLGVIGI FT YNVIRAVYHVLDNVLERTIDVWTSYDIKLDIY" FT CDS complement(1177..1596) FT /gene="TrAP" FT /product="transcription activator protein" FT /db_xref="GOA:B7ZDK0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B7ZDK0" FT /protein_id="CAJ90655.1" FT /translation="MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRIYLGNSKSPVFQNFETRQQTLLNTARHNQDSNTVQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP" FT CDS complement(1499..2584) FT /gene="Rep" FT /product="replication associated protein" FT /function="initiation of rolling circle replication" FT /db_xref="GOA:B7ZDK1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7ZDK1" FT /protein_id="CAJ90656.1" FT /translation="MASPRRFRVNAQNYFLTYPKCSLTKEEALSQLPTLETPTKKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDFVSPSRSAHVHPHIQGAKSASDVKNYI FT AKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKDDALRVLKELAPKDYVLQFH FT NLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVSSNVVCAAARPFRPISIVIEGD FT SRTGKTMWARCLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPL FT YSGRENIAPPEEEEEHSQEAS" XX SQ Sequence 2739 BP; 747 A; 588 C; 616 G; 788 T; 0 other; accgaatggc cgcgcaaatt tttaggtggg ccctcaacca atgaaattca cgctacatgg 60 cttatttagt gcgtggggac caataaatag acttgctcac caagtttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttccag aaagcgttca tggtctgagg tgcatgctag 180 ctgtaaaata tctccaagag atagaaaaga cctattcccc agacacagtc ggctacgatc 240 ttgtccgaga tctcattctt gttctccggg caaagaacta tggcgaagcg accagcagat 300 atcatcattt caactcccgc atcgaaagta cgccgacgtc tcaacttcga cagcccctat 360 ggagctcgtg cagttggtcc cattgcccgc gtcacaaaag caaaggcctg gaccaacagg 420 ccgatgaaca gaaaacccag aatgtacaga atgtatagaa gtcccgacgt gccaaggggc 480 tgtgaaggcc cttgtaaagt gcagtccttt gaatctaggc acgatgtctc tcatattggc 540 aaagtcatgt gtgttagtga tgttacccga ggaactggac tcacacatcg cgtagggaag 600 cgtttctgtg tgaaatccgt ctatgtgctg ggaaagatat ggatggatga aaacatcaag 660 acaaaaaacc atactaacag tgtcatgttt tttctggttc gtgaccgtcg tcctacagga 720 tctccccagg atttcgggga agtgtttaat atgtttgaca atgaaccgag cacagcaacg 780 gtgaagaaca tgcatcgtga tcgttatcaa gtcttacgga agtggcatgc gactgtgacg 840 ggaggaacat atgcatctaa ggagcaagca ttagttagga agtttgttag ggttaataat 900 tatgttgttt ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcacgcatca aatcctgtat atgctacttt gaaaatccgg 1020 atctactttt atgattcggt cacaaattaa taaatatcca gttttatatc atacgaagtc 1080 catacatcaa ttgttcgctc caatacatta tccaatacat gataaactgc tcttattaca 1140 ttataaattc ctataacacc tagcatatcc aggtacctaa ggacctgggt tctgaagact 1200 ctcaagaaaa tcccaatctg agggcgtaag cccgtccaga ttttgaaagt tagaaaacac 1260 ttgtgaagtc ccagggcttt ccgcaggttg tggttgaact gtatttgaat cttgattatg 1320 tcgtgctgtg ttaagaaggg tctgctgtcg tgtttcaaaa ttttgaaata caggggattt 1380 cgaatttccc aggtatatac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgattga tatgtaatac gaacaaccac acggtagatc 1500 aactcgcctc ctgcgaatgc tcttcttctt cttctggggg agcgatgttt tcgcgaccgg 1560 aatagagtgg ttcttcgagt gtgatgaaga ctgcattctt gattgcccac tgcttcagtg 1620 ctgcattttt ttcttcatcc agatattcct tatagctgct gtttggacct ttattgcaga 1680 ggaagatagt gggaattcca cctttaatca tgaccggctt tccgtacttc gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaagtgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtaccag gcatcattgc tatagacctt tgggctcaga tcaagatgtc 1860 cacacaagta attgtgtggt cctaagcacc gagcccacat tgttttgccc gtcctactat 1920 ccccctctat gactatgctt atgggcctaa aaggccgcgc agcggcacac acaacattag 1980 acgagaccca atcgacgagg tctgccggaa ctctgtcgaa ggatgaaatt gaaaatggag 2040 aaacataaac ctcagaagga ggttgaaaaa tacgatctaa attggtattt aaattgtgaa 2100 actgcagaac gtaatctttt ggggctaatt cctttaatac tctcaaagca tcgtctttat 2160 ttcccgtgtt aatcgcctgg gcatatgcat cgttcgccgt ttgttgacca ccacgggcag 2220 atcgtccatc gatctggaaa acaccccatt ctagaacgtc tccatctttg gcgatgtagt 2280 ttttgacgtc cgacgctgat ttagctccct gaatgtgcgg atggacatgt gctgaccgac 2340 ttggggaaac aaagtcgaag aatctgttat ttttgcactg gaatttccct tcgaattgga 2400 tgagaacatg gatatgcgga gacccatctt cgtgaagctc tctacagatc ttgatgaatt 2460 tcttcttcgt gggggtttct agggttggca attgggaaag tgcctcttct ttagttagag 2520 agcactttgg atatgtgagg aaatagtttt gggcatttac tctaaaacga cgtggcgaag 2580 ccataaaact tgtcgttttg attcggcgtc cctcaactta tctatgtgat tggtgtatgg 2640 agtcctatat ataggtaaga caccatatgg cattattgta attttgaaaa gaaaattact 2700 ttaattcaaa ttccctaaag cggccattcg tataatatt 2739 //