ID AM235750; SV 1; linear; genomic RNA; STD; VRL; 7350 BP. XX AC AM235750; XX DT 09-AUG-2006 (Rel. 88, Created) DT 21-MAR-2007 (Rel. 91, Last updated, Version 3) XX DE Human parechovirus 4 complete genome, genomic RNA, strain T75-4077 XX KW capsid protein 1AB; capsid protein 1C; capsid protein 1D; KW Genome linked protein VPg; Hbox/NC protein; polyprotein; protease; KW RNA-dependent RNA Polymerase. XX OS Human parechovirus 4 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Parechovirus. XX RN [1] RP 1-7350 RA Stanway G.; RT ; RL Submitted (09-MAR-2006) to the INSDC. RL Stanway G., Biological Sciences, University of Essex, Wivenhoe Park, RL Colchester, Essex, CO4 3SQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1128/JVI.00584-06. RX PUBMED; 17005640. RA AL-Sunaidi M., Williams C.H., Hughes P.J., Schnurr D.P., Stanway G.; RT "Analysis of a new human parechovirus allows the definition of parechovirus RT types and the identification of RNA structural domains."; RL J. Virol. 81(2):1013-1021(2007). XX DR MD5; 6643101fe7509c5f6efe1faf374db095. DR EuropePMC; PMC1797470; 17005640. DR EuropePMC; PMC2792847; 17553229. DR EuropePMC; PMC2812307; 19864477. DR EuropePMC; PMC2916555; 20519478. DR EuropePMC; PMC3421728; 22843855. DR EuropePMC; PMC3486295; 23043176. DR EuropePMC; PMC3700866; 23844186. DR EuropePMC; PMC4542383; 26157123. DR EuropePMC; PMC4637931; 23804569. DR RFAM; RF00210; IRES_Aptho. DR RFAM; RF00499; Parecho_CRE. XX FH Key Location/Qualifiers FH FT source 1..7350 FT /organism="Human parechovirus 4" FT /strain="T75-4077" FT /mol_type="genomic RNA" FT /country="USA:California" FT /collected_by="D Schnurr" FT /collection_date="03-Dec-1979" FT /identified_by="D Schnurr" FT /db_xref="taxon:362784" FT 5'UTR 1..708 FT CDS 709..7260 FT /product="polyprotein" FT /db_xref="GOA:Q0VYC9" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR009407" FT /db_xref="InterPro:IPR009419" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q0VYC9" FT /protein_id="CAJ84484.1" FT /translation="METIKGITDMAAGITKTIDSTVNTVNEIITNPSNAAGGDMLTKVA FT DDASNVLGPNCFATTSTPENKDVVQATTTVNTTNLTQHPSAPTMPFTPDFRNVDIFHSM FT AYDVTTGDKNPSKLIRLETEYWERTYARQHLIVDVELPHAFWDNTNKPAYGQSRYFAAV FT RCGFHFQVQVNVNQGTAGSALVVYEPKPAVTHSDKMEFGAFTNLPHVLMNLAETTQADL FT CIPYVSDTNYVKTDSSDLGRLRVYVWAPLTIPSGATSTVDVTVLGSLLQLDFQNPRVYN FT TQVDIYDNNNETRARQIRKKKWLTMSTKYKWTRSKIDIAEGPGAMNMANVLSTTGAQSV FT ALVGERAFYDPRTAGSKSRFDDLVKIAQLFSVMSDSTTPSTSSGIDDKGYFEWKATATP FT QTVIHRNVVKLNQFPNLNMFVNSYSYFRGSLIIRLSVYASTFNRGRLRMGFFPNFTTNT FT TSEIDNSIYTICDIGSDNSFEITIPYTFSTWMRKTNGHALGLFQIEVLNRLTYNSSSPS FT SVHCIVQGRLGNDAKFFCPAGSLVTFQNSWGSQMDLTDPLCIEDDCTEDCKQTISPDEL FT GLTSAQDDGPLGGEKPNYFLNFRAVNVDIFTVSHTKVDNIFGRAWFAYDHTYRDEGTWR FT QALDFPKKGHGALTQLFAYYSGELNIHVLFLSETGFLRVAHTYDSDTNRSDFFSSNGVI FT TVPAGEQMTLSVPFYSSKPLRTIRDSAALGYVMCKPFMSGTTGGKIEIYLSLRCPNLFF FT PLPAPKPTSGRSLRGDMAQLVNQSPYNITPVNQTMKLAYLDRGFYKHYGIIVGDNVYQL FT DSDDIFKTALTGKAKFTKSKLTADWVVEEECELDYFRVKYLESSVNSEHIFSVDKNCET FT IAKDIFGTHTLSQHQAIGLIGTILLTAGLMSTIQTPVNTTTIKEFFNHAIEGDEQGLSL FT LVQKCTTFFSSAATEILDNDLVKFIVKILVRILCYMVLYCHKPNILTTACLSTLLIMDV FT TSSSVLSPSCKALMQCLMDGDVKKLAEVVAESMSNTDDEEIKEQICDTVKYTKSILSNQ FT GPFKGFNEVSTAFRHIDWWIHTLLKIKDMVLSVFKPSMESKAIQWLERNKEHVCAILDY FT ASDIIVESKDQTKMKSQEFYQKYTDCLTKFKPIMAICFRSCHNSISNTVYRLFQELARM FT PSRISTQNDLIRVEPIGVWIQGEPGQGKSFLTHTLSRQLQKSCKLNGVYTNPTASEFMD FT GYDNQDIHLIDDLGQTRKEKDIEMLCNCISSVPFIVPMAHLEEKGKFYTSKLVIATTNK FT SDFSSTVLQDSGALKRRFPYIMHIRAAKAYSKSGKLNISQAMSTMATGECWEVSKNGRD FT WETLKLKDLVQKITEDYQERQKNYNCWKQQLENQTLDDLDDAVSYIKYNFPDAIPYIDE FT YLNIEMSTLIEQMEAFIEPRPSVFKCFATKVANHTRKAAKEVVDWFSNKIKSMLSFVER FT NKAWLTVVSAVTSAISILLLVTKIFKKEDSKDERAYNPTLPVTKPKGAFPVTQREFKNE FT APYDGQLEHIITQMAYITGSTTGHLTHCAGYQHDEIILHGHSIKYLEQEEDLILHYKNK FT VFPIENPSVTQVTLGGKPMDLAILKCKLPFRFKKNSKYYTNKIGTESMLIWMTEQGIIT FT KEVQRVHHSGGIKTREGTESTKTISYTVKSCKGMCGGLLISKVEGNFKILGMHIAGNGE FT MGVAIPFNFLKNDMSDQGIVTEATPIQPMYINTKTQIHKSPVYGAVEVKMGPAVLSKSD FT PRLEEPVECLIKKSAAKYRVNKFQVNNELWQGVKACVKSKFREIFGINGIVDMKTAILG FT TSHVNSMDLSTSAGYSFVKSGYKKRDLICLEPFFVSPMLEKLVQDKFHALLKGNQITTI FT FNTCLKDELRKLDKISAGKTRCIEACEVDYCIVYRMIMMEIYDKIYQTPCYYSGLAVGI FT NPYKDWHFMINALNDYNYEMDYSQYDGSLSSMLLWEAVEVLAYCHDSPDLVMQLHKPVI FT DSDHVVFNERWLIHGGMPSGSPCTTVLNSLCNLMMCIYTTNLISPGIDCLPIVYGDDVI FT LSLDKEIDPEKLQSIMADSFGAEVTGSRKDEPPSLKPRMEVEFLKRKPGYFPESTFIVG FT KLDTENMIQHLMWMKNFSTFKQQLQSYLMELCLHGKDTYLHCIKILDPYLKEWNIIVDD FT YDVVIAKLMPMVFD" FT mat_peptide 709..1575 FT /product="capsid protein 1AB" FT mat_peptide 1576..2340 FT /product="capsid protein 1C" FT mat_peptide 2341..3036 FT /product="capsid protein 1D" FT mat_peptide 3037..3486 FT /product="Hbox/NC protein" FT /function="RNA binding activity" FT mat_peptide 3487..3852 FT /product="hypothetical protein" FT mat_peptide 3853..4839 FT /product="hypothetical protein" FT /function="ATP hydrolysis and AMP kinase activities" FT mat_peptide 4840..5190 FT /product="hypothetical protein" FT mat_peptide 5191..5250 FT /product="genome linked protein VPg" FT mat_peptide 5251..5850 FT /product="protease" FT mat_peptide 5851..7257 FT /product="RNA-dependent RNA Polymerase" FT 3'UTR 7258..7350 XX SQ Sequence 7350 BP; 2356 A; 1366 C; 1527 G; 2101 T; 0 other; tttgaaaggg gtctcctaga gagcttggcc gtcgggcctt ataccccgac ttgccgagtt 60 tctctaagag agtccctttc ccagccttga ggcggctggt caataaatgc cttaaatgta 120 actaacacct aagattgctt taacaaccct atgcctggtc tccactagtt gaaggcatct 180 agcaataaaa tgagtggaat caagacgctt aaagcatagt gccagcatgc atttctaacc 240 tgcagttttt gcagggtggc agatggcgtg ccataattct attagtgaga tactacgctt 300 gtagatctta tgctcacaca gccatcctct agtaagtttg taagatgtct gatgacgtgt 360 gggaacttat tggaaataac accttgctgt aaagcatctt attgccagcg gaacaacacc 420 tggtaacagg tgcctctggg gccaaaagcc aaggtttaac agacccttta agattggttc 480 aaacctgagg tgttatggaa aatattcagt acctgctgat ttggtagtaa tgcaaacact 540 agttgtaagg cccacgaagg atgcccagaa ggtacccgta ggtaacaagt gacactatgg 600 atctgatctg gggccaacta cctctatctt ggtgagttgg ttaaaaaacg tctagtgggc 660 cacacccagg ggggatccct ggttttcttt tattacacaa ttgtcattat ggagacaatc 720 aaaggcatca ccgatatggc ggcaggaatc actaagacta ttgattctac tgtcaacact 780 gtcaatgaaa tcattaccaa ccctagcaat gcagctggag gtgacatgtt gactaaagtg 840 gctgatgatg cttcaaatgt actagggcca aattgttttg ctacaacttc aacaccagag 900 aataaggatg tggtccaagc aactactact gttaacacta caaacttgac acaacaccct 960 tctgccccta ctatgccctt tactccagat ttccgcaacg tggacatatt tcattcaatg 1020 gcttatgatg tcaccacagg ggacaagaat cccagcaaac taattaggtt ggaaacagaa 1080 tattgggagc ggacatatgc tagacaacat ttaatagtgg atgtggaact tcctcatgct 1140 ttttgggaca ataccaacaa acctgcatat ggacagtctc ggtactttgc agctgttaga 1200 tgtggtttcc acttccaagt ccaagtaaat gtgaaccaag gaacagctgg tagtgcacta 1260 gttgtctatg aaccaaaacc agcagtcacc cacagtgata aaatggagtt tggtgctttc 1320 accaatctgc cacatgtact tatgaatttg gctgaaacaa cacaagcaga tttatgtatc 1380 ccctatgtat cagacacaaa ctatgttaaa acggattcgt ctgacttagg gcgtttaaga 1440 gtgtatgtgt gggctccatt aacaatacca tctggtgcaa ctagtacagt tgatgtaact 1500 gtgttaggga gtctgttaca attagatttt cagaacccaa gagtctacaa cacccaagtg 1560 gatatatatg ataataacaa tgaaactaga gctaggcaaa ttaggaagaa gaaatggcta 1620 acaatgtcaa ctaaatacaa atggactagg agtaaaattg acattgccga gggcccagga 1680 gctatgaaca tggccaatgt acttagtact actggtgctc agtcagttgc tctagtggga 1740 gaaagagctt tttatgatcc tagaacagca ggtagtaaat ctagatttga tgatttggta 1800 aaaatagccc aattattttc agttatgagt gattcaacaa ccccctccac aagttcaggc 1860 attgatgata aaggctattt tgagtggaaa gccacagcca caccacaaac tgtaatccac 1920 cggaatgtgg tgaaattaaa ccaatttcca aacttgaaca tgtttgtgaa ttcatattca 1980 tacttcagag ggtcactaat tattaggtta tctgtttatg ctagtacttt taatcgtggt 2040 agactcagaa tgggtttctt cccaaacttt accacgaata ccacttcaga aatagacaat 2100 tcaatctata ccatttgtga tatagggtct gacaatagtt ttgaaattac cataccatat 2160 accttctcaa catggatgag gaagactaat gggcatgcct taggactatt ccagattgag 2220 gtgctaaata ggttgacata caacagttca agtcctagtt ctgtacattg tatagttcaa 2280 gggagattgg gcaatgatgc caaatttttt tgtccagctg gctcacttgt aactttccaa 2340 aattcttggg gctcacaaat ggatttgaca gacccattgt gtatagaaga tgattgcact 2400 gaggattgca aacagacaat ttctccagat gaattaggtt tgacttctgc acaagatgat 2460 ggacccttgg gaggtgaaaa gccaaattat ttcctaaatt tcagagcagt caatgtagac 2520 atattcactg tgagccacac caaagtagac aacatctttg ggagggcatg gtttgcatat 2580 gaccacacct atagagatga agggacttgg agacaagccc ttgatttccc aaagaaaggc 2640 catggtgcac taactcaact atttgcatat tattcgggtg agcttaatat acatgtttta 2700 tttttgagtg aaacaggatt tttgagagtg gcacatacct atgatagtga tacaaacaga 2760 tctgacttct tttcttcaaa tggtgtcatc acagtcccag caggagaaca aatgactctg 2820 tcagtgccat tctattcctc taagcctttg agaaccatca gggattcagc tgcactaggg 2880 tacgtgatgt gcaagccatt tatgtctgga accacaggtg ggaaaataga aatatacctg 2940 agtttgaggt gtccaaattt gtttttcccc ctccctgcac ctaagcccac atccggccga 3000 tcgctacggg gtgatatggc acaacttgta aaccaaagtc cctacaacat aacacctgta 3060 aatcagacta tgaaattagc atacttggat aggggtttct ataagcatta tggaattata 3120 gttggagata atgtgtacca attggattca gatgatatct ttaagacagc tctaactggg 3180 aaagcaaagt tcacaaaatc taaattgact gcagattggg ttgttgagga agaatgtgag 3240 ctggattact ttagggttaa ataccttgag tcatctgtga attctgaaca tatattttcg 3300 gttgacaaga attgtgagac cattgccaaa gacatatttg gtacacatac attaagtcaa 3360 catcaagcaa ttggtctaat tggtaccata ttgttaactg ctggcctcat gtccacaatt 3420 cagacaccag tcaataccac aacaattaag gaattcttta atcatgccat tgagggcgat 3480 gagcagggtt tgtcactact tgtgcagaaa tgcactactt tcttttcatc agctgcaact 3540 gaaatattag acaatgacct agttaaattt atagttaaaa ttttagttag aattttgtgt 3600 tatatggtcc tatattgcca caaaccaaat atacttacta ctgcatgctt atccactctg 3660 ttaataatgg atgttacttc ttcatccgtg ctatcccctt cttgtaaggc gctcatgcag 3720 tgcctcatgg atggagatgt caagaagttg gcagaggtgg tagctgagtc tatgtctaac 3780 acagatgatg aggaaattaa ggaacaaatt tgtgacacag tgaaatatac caaaagtatt 3840 ctgtctaacc aaggcccatt taaaggcttt aatgaagtct caactgcttt cagacacatt 3900 gattggtgga tacacacctt attgaagatc aaggacatgg tattgagtgt attcaagcct 3960 agtatggaga gtaaagctat tcagtggctg gagagaaaca aggaacacgt ttgtgccatt 4020 ttggactatg cctcagacat aattgtagaa tcaaaagacc agacaaaaat gaagtcacag 4080 gaattctatc agaagtatac agactgcctg acaaaattta agccaattat ggctatttgt 4140 tttaggagtt gccataatag tattagtaac acagtttata gacttttcca agaattggct 4200 aggatgccat ctagaattag tactcaaaat gatttaatta gggtggaacc aattggggtt 4260 tggattcaag gtgagccagg ccaagggaaa tctttcttaa cacacactct atctaggcaa 4320 ttgcaaaaat cttgtaaact aaatggtgtt tacactaacc caactgccag tgaatttatg 4380 gatggttatg acaatcaaga catccacctt atagatgact tgggacagac caggaaagaa 4440 aaagatatag agatgctctg caattgtata tcatctgttc ccttcattgt tccaatggcg 4500 cacttggaag aaaagggcaa gttttacact agtaaattgg taatagcaac aaccaataag 4560 tctgacttct caagcactgt attgcaggat tctggtgctt taaaaagaag attcccatat 4620 attatgcaca tcagagctgc taaagcttac agcaaatctg gtaagttgaa tattagccag 4680 gctatgtcca ctatggctac aggtgagtgc tgggaagtat caaaaaatgg tagggactgg 4740 gagaccttaa aacttaaaga tttggtacag aagatcacag aagattatca ggaaaggcag 4800 aagaactaca actgttggaa acaacagctg gaaaaccaga ctctagatga tttagatgat 4860 gcagtatcat acatcaagta caatttccca gacgcaattc cttacatcga tgaatatctt 4920 aatattgaaa tgtctactct aattgaacag atggaagctt ttattgaacc acgacctagt 4980 gtgtttaaat gctttgccac caaagttgct aaccacacca ggaaagcagc taaggaggtt 5040 gtggactggt ttagtaataa gattaaatca atgttaagtt ttgttgaaag gaataaagcc 5100 tggttaacag tagtttcagc agtaaccagt gctataagca ttctactatt ggttaccaaa 5160 atcttcaaga aggaggactc aaaagatgaa agagcataca accccactct ccctgtgacc 5220 aaaccaaaag gggctttccc agtaacacaa agggaattta aaaatgaagc cccttatgat 5280 ggccaattag aacacataat cacccagatg gcatatataa ctggttctac tacggggcac 5340 cttactcatt gtgcggggta ccaacatgat gagatcatct tacatgggca ttcgattaaa 5400 taccttgaac aagaagagga tctaatactg cattataaga ataaggtgtt cccaattgaa 5460 aatccatcag tgacacaggt aacattgggt ggtaaaccga tggatttggc cattctaaaa 5520 tgtaaattac cattcagatt taagaaaaat tccaaatatt acactaacaa aattggaaca 5580 gagagtatgt taatttggat gactgaacaa ggcatcatta ctaaagaggt tcaaagagtc 5640 caccattctg gaggcattaa aacacgggag ggaactgaga gtacaaaaac aatcagttat 5700 accgtaaagt cctgtaaagg tatgtgtgga ggtctgctaa tttccaaagt tgagggaaac 5760 tttaagattc ttggaatgca catagctgga aatggagaaa tgggcgttgc cattcctttc 5820 aattttctta agaatgatat gtctgaccaa ggcattgtca cagaagcgac acccatacag 5880 cctatgtaca ttaatactaa aactcaaatt cacaagagtc cagtctatgg tgcagtggaa 5940 gttaagatgg gtccagcagt cttaagtaaa tcagacccta gacttgaaga accagtcgaa 6000 tgtttgatta agaaatcagc tgcgaagtat agggtcaaca aattccaggt caataatgaa 6060 ttatggcagg gtgttaaagc ttgtgtcaag tctaaattta gagagatctt tgggattaat 6120 ggcatcgtgg acatgaagac agccattttg ggaacatccc atgtgaactc tatggatctg 6180 agtacatcag ctggatatag ctttgtcaaa tctggttata aaaagagaga tctaatttgt 6240 cttgaacctt tttttgtttc acctatgtta gagaaacttg tacaagataa gtttcatgca 6300 ctactcaagg gcaatcaaat tactacaatt ttcaacactt gtctaaaaga cgaattgagg 6360 aaattggaca agatctcagc cggcaaaact aggtgcattg aggcatgtga ggtggactat 6420 tgtatagtct atagaatgat catgatggaa atctatgata aaatttatca gacaccatgt 6480 tattattcag gtcttgctgt tggaattaac ccatacaaag attggcactt tatgattaat 6540 gccttgaatg attacaacta tgaaatggat tattctcaat acgatggttc ccttagttca 6600 atgttattat gggaggctgt ggaagttttg gcttattgtc acgattcacc tgatcttgtt 6660 atgcaattac acaaaccagt aattgactcg gaccatgtgg tttttaacga gagatggttg 6720 attcatggtg gtatgccgtc agggtcccca tgcactactg tgttaaattc actgtgtaat 6780 ctaatgatgt gcatttacac tactaattta atcagtccag gaattgactg tttaccaatt 6840 gtttatggtg atgatgtcat cttgtcactg gataaagaaa tagacccaga gaaactgcag 6900 agtatcatgg cagattcatt tggtgctgaa gtgactggct cccgcaagga cgagcctcca 6960 tcattaaagc ctagaatgga ggtagagttc ttaaaacgca agcctggtta tttcccagag 7020 tctacattta tagtaggaaa attggacact gaaaatatga tacagcattt aatgtggatg 7080 aaaaatttca gcacatttaa gcagcaactt caatcctact taatggagtt atgcctccat 7140 ggaaaagaca cttacttaca ctgcatcaaa atcttggatc cctatttgaa agagtggaac 7200 atcattgtgg atgattatga tgtagtcatt gctaagttaa tgcccatggt gtttgactaa 7260 attcattgtt ttaggttttt tttttgttat ggattatatc attagaacac taattttatt 7320 agaacactaa tttggaatat tggacatacc 7350 //