ID AM183117; SV 1; linear; genomic RNA; STD; VRL; 3360 BP. XX AC AM183117; XX DT 23-JAN-2006 (Rel. 86, Created) DT 12-MAR-2007 (Rel. 91, Last updated, Version 2) XX DE Cucumber mosaic virus (strain Ri-8) genomic RNA segment RNA1, strain Ri-8, DE complete sequence XX KW 1a protein; gene 1a gene. XX OS Cucumber mosaic virus (strain Ri-8) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3360 RA Lopez C.; RT ; RL Submitted (20-JAN-2006) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [2] RA Aramburu J., Galipienso L., Lopez C.; RT "Return of a cucumber mosaic virus isolate belonging to subgroup IB in the RT northeastern Spain and comparative fitness with isolates of other groups"; RL Unpublished. XX DR MD5; 99a5b162bb073042c94180b928462a8f. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3360 FT /organism="Cucumber mosaic virus (strain Ri-8)" FT /segment="RNA1" FT /host="tomato" FT /strain="Ri-8" FT /mol_type="genomic RNA" FT /country="Spain:Barcelona" FT /db_xref="taxon:367798" FT CDS 96..3077 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q2MCK8" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2MCK8" FT /protein_id="CAJ65580.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDNQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVSEVSDSPETSSQTPDDTADVCGREREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3360 BP; 849 A; 748 C; 811 G; 952 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt tcttaatctt ttctttgtaa ttcctatggc gacgtcctcg ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcaacg tagaggccgt aaggtctaca 240 tccggaacgt tttgggtgta aaggattccg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgtt 480 gttccccttg tttgggtatc cgcgataaga tgcgccatgc ggaacgctta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg gcagccggat ttctgcactc 600 aaccggctgc ggattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcga tgaatgctca cggaaccact attttgaagg 720 ggacgatgat gttcgatggt gcgatgatgt ttgacaacca aggtgtaata cccgaactta 780 attgtcagtg gaggaagatt aggagtgctt tctccgaaac tgaagacgtc acaccactgg 840 ttggtaagct taattccaca gttttctccc gcgtgcggaa gttcaagacg atggtagctt 900 ttgatttcat caacgagtct actatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttcttacgga ccagacttat tcgtaccgag ggatgactta cggtatcgaa cgctgcgtta 1020 tccacgctgg tattatgacg tacaagatta tcggtgtacc tgggatgtgc ccacccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagacta tgttggtcta aagatccccg 1140 cgtcgcagga tttggttgag tggaaaacag tgcggatttt aacgtcaaca ttacgtgaga 1200 ctgaagagat tgccatgagg tgttataatg ataagaaagc gtggatggaa caattcaagg 1260 ttatcctagg tgttctatcc gcgaaatcat ctaccattgt tattaatggt atgtccatgc 1320 aatctggcga gcgaatagac attaatgatt atcactacat cggtttcgcc attcttcttc 1380 acacaaaaat gaagtatgaa caacttggaa aaatgtatga tatgtggaat gcttcgagta 1440 tttcgaagtg gtttgccgcg ttgactcgtc cgctgcgtgt gtttttctca agtgttgttc 1500 acgcactatt cccgactttg agaccccgcg aggaaaaaga attcttgatc aagctctcca 1560 ccttcgttac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catccgctgc atacgttgct acgcaggctg ttaccgatgg gaagattttg gctgcgcaga 1680 aagccgagaa gcttgctgag aagcttgcac aacccgtgag tgaggtatcg gacagtcctg 1740 agacgtcatc tcaaacgcct gatgatactg ctgatgtttg tggaagggag cgagaggttt 1800 cggaactcga ctccctatca gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gctagagtat gccgcttatg agaaacaatt gcacgacact acagtgtcta 1920 atttaaaacg tatttggaac atggcgggcg gtgatgacaa aagaaactcc ctcgagggta 1980 atttgaagtt tgttttcgat acgtacttta ccgttgatcc tatggtgaac attcatttct 2040 ccacgggtcg gtggatgcgt cctgtgcccg agggtattgt ttattctgtc ggttataatg 2100 aacgcggttt aggtccgaag tctgatggag agctttacat tgtcaatagt gaatgcgtga 2160 tctgtaacag tgaatcttta tccactgtca cgcgttctct ccaagctcca accgggacca 2220 ttagtcaagt tgacggagtt gctggttgtg ggaaaaccac ggcaattaaa tccatttttg 2280 agccgtccac tgacatgatc gttaccgcga acaagaagtc cgcccaagat gtacgtatgg 2340 cacttttcaa atcgtcggat tccaaagaag cttgcacctt tgttcgaaca gccgattctg 2400 tcctacttaa tgaatgtccg actgttagta gggttttggt tgacgaggtc gttctgctac 2460 actttggtca attatgtgcc gtcatgtcta agttgaaggc cgtgcgagct atatgttttg 2520 gggattcgga gcagattgcc ttttcctcac gtgatgcctc atttgacatg cgtttctcta 2580 agattattcc tgatgaaact agtgatgctg acaccacatt ccgtagccca caagatgttg 2640 taccgcttgt gcgtttaatg gctacgaagg cccttccgaa aggaacccat tcaaaataca 2700 cgaaatgggt ttctcaatct aaagtgaaaa gatctgttac atctcgtgcc atcgctagtg 2760 tgacattggt tgacttggat tcttccaggt tttatataac gatgacccaa gctgataagg 2820 cctcactgat ttcaagggcg aaagagatga atctaccaaa gactttctgg aatgaaagga 2880 ttaaaaccgt gcatgagtct caaggtatct ccgaagacca cgttactttg gtaagattaa 2940 agagtacaaa atgtgaccta tttaaacagt tttcttattg tctcgttgca ctgacgagac 3000 acaaggtcac attccgctac gagtactgtg gtgtattgaa cggcgattta atcgccgaat 3060 gtgttgctcg tgcttagcgg tctccctcct tcgggcggga tctgagttgg cggtaatctg 3120 caaaccgtct gaagtcacta aacacattgt gtggtgaacg ggttgtccat ccagctaacg 3180 gctaaaatgg tcagtcgtgg agaaatccac gccagtagac ttacaagtct ctgaggcacc 3240 tttgaaacca tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt ctagcacaac 3300 gtgctagttt cagggtacgg gtgccccccc attttcgtgg gggcctccaa aaggagacca 3360 //