ID AM183114; SV 1; linear; genomic RNA; STD; VRL; 3361 BP. XX AC AM183114; XX DT 23-JAN-2006 (Rel. 86, Created) DT 12-MAR-2007 (Rel. 91, Last updated, Version 2) XX DE Cucumber mosaic virus (strain Pl-1) genomic RNA segment RNA1, strain Pl-1, DE complete sequence XX KW 1a gene; 1a protein. XX OS Cucumber mosaic virus (strain Pl-1) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3361 RA Lopez C.; RT ; RL Submitted (20-JAN-2006) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [2] RX DOI; 10.1007/s00705-006-0875-z. RX PUBMED; 17122894. RA Lopez C., Aramburu J., Galipienso L., Nuez F.; RT "Characterisation of several heterogeneous species of defective RNAs RT derived from RNA 3 of cucumber mosaic virus"; RL Arch. Virol. 152(3):621-627(2007). XX DR MD5; 33d1ce1483d486ad5887872b274ca4e9. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3361 FT /organism="Cucumber mosaic virus (strain Pl-1)" FT /segment="RNA1" FT /host="tomato" FT /strain="Pl-1" FT /mol_type="genomic RNA" FT /country="Spain:Barcelona" FT /db_xref="taxon:367797" FT CDS 96..3077 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:Q2MCL3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q2MCL3" FT /protein_id="CAJ65575.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTLPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRTAFSETEDVTPLSEKLNSTVFSHVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASHISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNVECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEAPSSTPDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWDMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGFNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC FT IARA" XX SQ Sequence 3361 BP; 833 A; 748 C; 815 G; 965 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt tcttaatctt ttctctgaaa ttcctatggc gacgtcctcg ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactgctcgc gaccgccctc gttgataaga 180 cagctcatga gcagcttgag gagcaattac agcatcaacg taggggccgt aaggtctaca 240 tccggaacgt tctgggtgta aaggattccg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcttc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacacaac gtacactgct 480 gttccccttg tttgggtatc cgcgataaaa tgcgccatgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg acagccggat ttctgcactc 600 tcccggctgc agattgcaaa gtacaagccc actttgctat atctattcac ggaggttacg 660 atatgggttt tagaggactt tgtgaagcaa tgaacgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca gggtgtaata cctgaactta 780 attgccagtg gagaaagatc aggactgctt tctctgaaac tgaggacgtc acgccgttgt 840 ctgagaaact taattccaca gtattttccc atgtgcgtaa attcaagacc atggtggcct 900 ttgattttat caatgagtct accatgtctt atgttcatga ttgggagaat ataaagtctt 960 ttcttacaga tcagacctac tcataccgag ggatgactta cggtattgag cgttgcgtta 1020 ttcacgccgg cattatgacg tataagatca ttggtgtacc tgggatgtgt ccacccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaggacta tgttggtcta aagattcccg 1140 cgtcgcagga cttggttgaa tggaaaacag tgcgtatttt aacgtcaaca ttacgtgaga 1200 cggaagagat tgctatgagg tgttacaacg ataagaaagc gtggatggaa caatttaaag 1260 ttattttagg tgttctatct gcgaaatcat ctaccattgt catcaatggt atgtccatgc 1320 aatctggcga gcgtatcgac atcaacgatt atcattatat cggcttcgcc atccttcttc 1380 acacaaaaat gaagtatgaa cagttgggaa aaatgtacga tatgtggaat gcttcgcata 1440 tttcgaagtg gtttgcagcg ttgactcgtc cgctgcgtgt gtttttctcc agcgttgttc 1500 acgcattgtt tccgactttg agaccgcgcg aggaaaaaga attcctgatt aagctctcca 1560 cctttgtaac tttcaatgta gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acacaggctg ttaccgatgg gaaagttttg gctgcgcaga 1680 aagccgagaa gctcgctgag aagcttgcac aacccgtgat tgaggtatcg gacagacctg 1740 aggcgccatc ttcaacgcct gatgatacag ctgatgtttg tggaaaggag caagaggttt 1800 cggaacttga ctccctatca gctcaaacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gttagagtat gccgcttatg agaaacaatt acatgacact acagtgtcta 1920 atctgaagcg tatttgggat atggcgggtg gtgatgacaa gagaaactcc ctcgagggta 1980 atttgaagtt tgtttttgac acgtatttca ctgttgaccc catggtgaat atccatttct 2040 ccacgggtcg gtggatgcgt cctgtgcctg agggaattgt ttactctgtt ggttttaatg 2100 aacgcggatt aggtccgaag tctgatgggg agctttacat tgttaatagt gagtgcgtga 2160 tttgtaatag tgagtcttta tctactgtca ctcgctcgct tcaagcccca accggaacta 2220 ttagtcaagt cgacggagtt gcaggttgtg ggaagaccac agcaataaaa tcaatttttg 2280 agccgtccac tgacatgatc gttaccgcga acaagaaatc cgcccaagac gttcgtatgg 2340 cactctttaa atcgtcggat tccaaagaag cttgcacctt cgttcgtact gccgattctg 2400 tcctacttaa tgaatgtcca actgttagta gggttttggt cgatgaagtt gtgctgcttc 2460 actttggtca attgtgtgct gtcatgtcta agctgaaggc tgtgcgagct atatgtttcg 2520 gggattctga gcagattgcc ttctcttctc gtgatgcttc gtttgacatg cgtttctcta 2580 agattattcc tgatgaaact agtgatgcgg ataccacatt ccgtagtcca caagatgtcg 2640 tgcctcttgt gcgtctgatg gctacgaagg ctctcccgaa aggaactcat tcgaaataca 2700 ctaaatgggt ttctcaatct aaggtgaaaa gatctgttac gtctcgtgcc atcgccagtg 2760 tgacattggt tgatttagat tcttccaggt tttatatcac gatgactcaa gctgacaagg 2820 cttcactgat ttcgagagcg aaagagatga acttaccgaa gaccttttgg aatgaaagga 2880 ttaagactgt gcatgagtct cagggtatct ctgaagacca cgttactttg gtaagactga 2940 agagcacgaa atgtgacctg ttcaaacagt tttcgtactg tcttgttgcc ttgacaagac 3000 ataaggtcac cttccgctac gagcattgtg gtgtattaaa cggcgattta atcgccgaat 3060 gtattgctcg tgcttagcgg cttccctcct tcgggcggga tctgagttgg cggtaatcta 3120 caaaccgtct gaagtcacta aacgctctgc ggtgaacggg ttgtccatcc agcttacggc 3180 taaaatggtc agtcgtggag aaattcacgc cagtagactt acaagtctct gaggtgcctt 3240 tgaaaccatc tcctaggttt cttcggaagg acttcggtcc gtgtacttct agcacaagat 3300 gctagtttca gggtacgggc acccccccct catttaatgg ggggcctcct caaggagacc 3360 a 3361 //