Dbfetch
ID AM182232; SV 2; circular; genomic DNA; STD; VRL; 2745 BP. XX AC AM182232; XX DT 18-JAN-2006 (Rel. 86, Created) DT 28-JUN-2010 (Rel. 105, Last updated, Version 3) XX DE Vernonia yellow vein virus segment DNA-A, complete viral segment XX KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; ac5 gene; AC5 protein; KW AV1 gene; av2 gene; AV2 protein; coat protein; complete viral segment; KW replication enhancer protein; replication initiator protein; KW transactivator protein. XX OS Vernonia yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC revised by [3] RA Usha R.; RT ; RL Submitted (17-JAN-2006) to the INSDC. RL Usha R., Plant Biotechnology, Madurai Kamaraj University, School of RL Biotechnology, Tamil Nadu, 625021, INDIA. XX RN [2] RX DOI; 10.1007/s11262-010-0484-5. RX PUBMED; 20401528. RA Packialakshmi R.M., Srivastava N., Girish K.R., Usha R.; RT "Molecular characterization of a distinct begomovirus species from Vernonia RT cinerea and its associated DNA-beta using the bacteriophage Phi 29 DNA RT polymerase"; RL Virus Genes 41(1):135-143(2010). XX RN [3] RP 1-2745 RA Usha R.; RT ; RL Submitted (22-JAN-2010) to the INSDC. RL Usha R., Plant Biotechnology, Madurai Kamaraj University, School of RL Biotechnology, Tamil Nadu, 625021, INDIA. XX DR MD5; 73effe90e82619cdfd4a45bbe9d7b7d5. XX FH Key Location/Qualifiers FH FT source 1..2745 FT /organism="Vernonia yellow vein virus" FT /segment="DNA-A" FT /host="Vernonia cinerea" FT /mol_type="genomic DNA" FT /country="India:Madurai" FT /isolation_source="diseased leaves" FT /tissue_type="infected leaves" FT /db_xref="taxon:367061" FT CDS 129..476 FT /gene="av2" FT /product="AV2 protein" FT /db_xref="GOA:Q2MCS8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2MCS8" FT /protein_id="CAJ57817.1" FT /translation="MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDL FT ICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVP FT KAQALSDVQKQ" FT CDS 289..1059 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:Q2MCS7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2MCS7" FT /protein_id="CAJ57818.1" FT /translation="MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWT FT NRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHR FT VGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEP FT STATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNH FT TENALLLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(319..993) FT /gene="ac5" FT /product="AC5 protein" FT /db_xref="GOA:Q2MCS6" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q2MCS6" FT /protein_id="CAJ57819.2" FT /translation="MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACI FT LTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVR FT MVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHL FT TWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGY FT GS" FT CDS complement(1056..1460) FT /gene="ac3" FT /product="replication enhancer protein" FT /function="replication enhancer" FT /db_xref="GOA:Q2MCS5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2MCS5" FT /protein_id="CAJ57820.2" FT /translation="MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDI FT IEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNL FT VIRAVDHVLHNVLSGTIYVKQFEIIKFNFY" FT CDS complement(1201..1608) FT /gene="ac2" FT /product="transactivator protein" FT /function="transactivation" FT /db_xref="GOA:Q2MCS4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2MCS4" FT /protein_id="CAJ57821.2" FT /translation="MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHI FT NCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPL FT PEESTGTTQMLSDFHHLESLTSSDIAFLKSI" FT CDS complement(1547..2596) FT /gene="ac1" FT /product="replication initiator protein" FT /function="initiation of replication" FT /db_xref="GOA:Q2MCS3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2MCS3" FT /protein_id="CAJ57822.2" FT /translation="MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIR FT VCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYM FT EEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPL FT FSSANQSPT" FT CDS complement(2146..2439) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2MCS2" FT /protein_id="CAJ57823.1" FT /translation="MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQ FT AMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2745 BP; 673 A; 511 C; 646 G; 915 T; 0 other; accggatggc cgcgaaattt tttttgggcc ccaccacgtg ctctgtcttt aaatcttgtc 60 cgctcctcaa agtcttatta gttcgtggtc ccctataaag attggtctcc aagttttcat 120 tttcaaaaat gtgggatccc cttttgcatg agttccctga aaccgtacat ggtcttcgtt 180 gtatgctagc ggttaagtat ttatccgccg tggcagatac gtattctcct gataccttag 240 gtttcgatct tcttagggat ttaatttgtg tcgttagggc tcgtaattat gtcgaagcga 300 ccagcagata tagtgatttc aactcccgta tccaaagtac gtcgtcgtct gaatttcgac 360 agcccctatt ctcgacgtgc tgctgtcccc actgtccgcg tcaccaaaag acaaatgtgg 420 accaacaggc ccatgtaccg aaagcccagg ctctatcgga tgtacaaaag caatgatgta 480 ccaaagggct gtgaaggccc atgtaaggtg cagtcgtttg aacagcgtca tgatattgct 540 catactggca aggtgatatg tgtctcggat gtcacacgtg gtaatgggtt gactcatagg 600 gttggtaaac gtttttgtgt taagtccatg tatgtgcttg gtaaggtgtg gatggatgaa 660 aacatcaaga cgaagaacca tacgaacaca gttatgttct atattgtaag agatcgtcgt 720 ccgtttggga ctcccatgga ttttggtcag gtttttaaca tgtatgataa tgagcctagc 780 actgctactg tcaaaaatga tttgagggat cggtatcagg tattgcggaa gttctacgca 840 actgttactg gtggtcagta tgcaagcaag gagcaggcaa tggttcagaa attcatgagg 900 ctgaataatt atgttgttta caatcatcag gaggctgcta agtatgataa ccatactgag 960 aacgctttgt tgttgtatat ggcatgtact catgcttcta atccagtgta tgctactttg 1020 aagatacgga tatattttta tgactctgta tcaaattaat aaaaattaaa ttttattatt 1080 tcgaattgtt ttacatatat tgttcctgat aatacattgt gtaatacatg atctactgct 1140 ctaattacaa gatttaaaga aattacgcct aaactatcca agtattttaa tacttgtgtc 1200 ttaaatactc ttaagaaatg cgatgtcgct ggacgtaagt gactccaaat ggtgaaagtc 1260 agataacatt tgcgtagtcc cagtgctttc ctcaggtagt ggttgaattg gatcctgact 1320 tcgatgatgt ccttgttcat gttgaatggt cgttgtaggt gctttaggat cttgaaatat 1380 aggggatttg gaacttccca gataaatacg ccattctgag cttgagctgc agtgatgggt 1440 tcccctgtgt gtgaatccat ggttgtggca gttgatgtgt ctgtatattg agcatccaca 1500 ggggaggtct atcctctttc ttttgattgg tcttgctttt gctgctctat gtagggcttt 1560 gattggcact tgagaacagc ggctcgtata gggtgaggaa ggttgcattt ttgagtgacc 1620 agtctcttaa tgctttgttt ttttcttcgt ctaggtattc tttataggat gatgttggcc 1680 ctggattgca taggaagatt gttggaatcc ctcctttaat ttgaatgggt tttccgtatt 1740 tcgtgttgct ttgccactcc ctttgggccc ccataaattc tttatagtgt tttaggtagt 1800 gggggtcaac atcgtcaatg acgttatacc acgcgtcatt gctgtatact ttcgggctta 1860 ggtccaggtg accacatagg tagttgtgtg ggcctagtga acgagcccac attgtctttc 1920 ctgtcctgct ttctccttct attattatac tgagtggtcg gagtggccgc aggccggcgt 1980 cggaaatatt ttccgatgcc cactcttcca tttcctctgg tacattatta aaagtagaag 2040 ataaaaaagg cgaaatataa atctctaatg gaggtgtaaa aatcctatct aaattactat 2100 ttaaattatg aaactgtaat acaaaatctt tgggagcttt ctcccttagt atattgaggg 2160 ccgcagcttt ggaccctgaa ttgattgcct cggcatatgc gtcgttggca gattggcaac 2220 ctcctctagc tgatcttcca tcgatttgga aaactccaaa gtcaaggatg tctccgtctt 2280 cttccatgta ggatttgaca tcgcttgagc ttttagctcc ctgaatgttc ggatggaaat 2340 gtgctgacct gcttggggtt tgtaggtcga agaatctgtt attttggcat ttgaatttgc 2400 cttcgaactg gatgaggaca tgcaggtgag gagtcccatc ttcgtgtagt tctctgcaaa 2460 ctctgatgaa cagtttattt gtaggtgttt ctaggttttt aatttgggaa agggtttctt 2520 cttttgtgag tgagcagtga gggtatgtga ggaaatagtt cttggcattt attaagaacc 2580 gttttggggg tgccatgttg acttggtcaa tcgggtcctc tcaaactatc gtatgcaatc 2640 ggggaatggg tctcaatata taggtgagga cctaaatggc atggattgta atttcggaat 2700 gaaattcaaa tttcaaattg gtaaagcggc catccgtcta atatt 2745 //