Dbfetch
ID AM114273; SV 1; linear; genomic RNA; STD; VRL; 2216 BP. XX AC AM114273; XX DT 18-OCT-2005 (Rel. 85, Created) DT 18-OCT-2005 (Rel. 85, Last updated, Version 1) XX DE Cucumber mosaic virus partial 3a gene and partial cp gene for coat protein, DE genomic RNA, strain Le02 RNA3 XX KW 3a gene; 3a protein; coat protein; cp gene. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2216 RA Salanki K.; RT ; RL Submitted (18-OCT-2005) to the INSDC. RL Salanki K., Virology, Agricultural Biotechnology Center, Godollo, RL Szent-Gyorgyi A. str. 4., H-2100, HUNGARY. XX RN [2] RA Salamon P., Kiss L., Salanki K.; RT "Isolation of a highly virulent strain of CMV from tomato affected by fruit RT necrosis in Hungary"; RL Unpublished. XX DR MD5; 2aa1c97b4833e69eb059e199e9273410. DR EuropePMC; PMC3550809; 23730005. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..2216 FT /organism="Cucumber mosaic virus" FT /lab_host="Nicotiana tabacum cv. xanthi" FT /strain="Le02 RNA3" FT /isolate="CMV-Le02" FT /mol_type="genomic RNA" FT /country="Hungary:Nyirlugos" FT /isolation_source="Lycopersicon esculentum" FT /db_xref="taxon:12305" FT CDS 121..960 FT /codon_start=1 FT /gene="3a" FT /product="3a protein" FT /function="movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q3BJZ0" FT /protein_id="CAJ38269.1" FT /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH FT WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE FT GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGHRKRCFAVVIE FT RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK FT SQLNNIESSQYLLTNAKTNQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL" FT mat_peptide 121..960 FT /gene="3a" FT /product="3a protein" FT CDS 1258..1914 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q76U37" FT /db_xref="InterPro:IPR000247" FT /db_xref="InterPro:IPR023800" FT /db_xref="InterPro:IPR037137" FT /db_xref="UniProtKB/TrEMBL:Q76U37" FT /protein_id="CAJ38270.1" FT /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT FT LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV FT SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN FT NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV" FT mat_peptide 1258..1914 FT /gene="cp" FT /product="coat protein" XX SQ Sequence 2216 BP; 518 A; 528 C; 527 G; 643 T; 0 other; gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg 60 agtcgtgctg tccgcacata ttttatcttt ctgtatacag tgtgttagat ttcccgaggc 120 atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac 180 gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac 240 ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc 300 gaagtaaccc acggtcgtat tgcttccttc tttaagtctg gatatgatgt tggtgaatta 360 tgctcaaaag gatacatgag tgtccctcaa gtgttatgtg ctgttactcg aacagtttcc 420 actgatgctg aagggtcttt gagaatttac ttagctgatc taggcgacaa ggagttatct 480 cccatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc 540 cagccgacgt atgattgtcc tatggaaaca gttgggcatc gtaagcggtg ttttgctgtc 600 gttatcgaaa gacatggtta cattgggtat accggtacca cagctagcgt gtgtagtaat 660 tggcaagcaa ggttttcatc taagaataac aactacactc atatcgcagc tgggaagact 720 ctagtactgc ctttcaacag actagctgag caaacaaaac cgtcagctgt tgctcgcctg 780 ttgaagtcgc aattgaacaa cattgaatct tcgcaatatt tgttaacgaa tgcgaagact 840 aatcaaaatg cgcgcagtga gtccgaggat ttaaatgttg agagccctcc cgccgcaatc 900 gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag 960 cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata 1020 gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggaa 1080 cacatctggt tttagtaagc ctacatcata gttttgaggt tcaattcctc ttactccctg 1140 ttgagcccct tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact 1200 atatagagag tgtgtgtgct gtgttttctc ttttgtgtcg tagaattgag tcgagtcatg 1260 gacaaatctg aatcaaccag tgctggtcgt aaccgtcgac gtcgtccgcg tcgtggttcc 1320 cgctccgccc cctcctccgc ggatgctaac tttagagtct tgtcgcagca gctttcgcga 1380 cttaataaga cgttagcagc tggtcgtcca actattaacc acccaacctt tgtagggagt 1440 gaacgctgta gacctgggta cacgttcaca tctattaccc taaagccacc aaaaatagac 1500 cgtgggtctt attacggtaa aaggttgtta ctacctgatt cagtcacgga atatgataag 1560 aagcttgttt cgcgcataca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg 1620 tgggtgacag tccgtaaagt tcctgcctcc tcggacttat ccgttgccgc catctctgct 1680 atgttcgcgg acggagcctc accggtactg gtttatcagt atgccgcatc tggagtccaa 1740 gccaacaaca aactgttgta tgatctttcg gcgatgcgcg ctgatatagg tgacatgaga 1800 aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga gctagtactt 1860 catgttgaca tcgagcacca acgcattccc acatctggag tgctcccagt ctgattccgt 1920 gttcccagaa tcctccctcc gatctctgtg gcgggagctg agttggcagt tctgctataa 1980 actgtctgaa gtcactaaac gttttcacgg tgaacgggtt gtccatccag cttacggcta 2040 aaatggtcag tcgtggagaa atccacgcca gcagatttac aaatctctga ggcgcctttg 2100 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacctctag cacaacgtgc 2160 tagtttcagg gtacgggtgc ccccccactt tcgtgggggc ctccaaaagg agacca 2216 //