ID AM087548; SV 1; linear; genomic RNA; STD; VRL; 3147 BP. XX AC AM087548; XX DT 29-JUN-2006 (Rel. 88, Created) DT 29-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Ophiostoma mitovirus 1a RdRp gene for RNA-dependent RNA polymerase, genomic DE RNA XX KW RdRp gene; RNA-dependent RNA polymerase. XX OS Ophiostoma mitovirus 1a OC Viruses; Riboviria; Narnaviridae; Mitovirus; unclassified Mitovirus. XX RN [1] RP 1-3147 RA Buck K.W.; RT ; RL Submitted (25-SEP-2005) to the INSDC. RL Buck K.W., Biology, Imperial College London, Sir Alexander Fleming RL Building, London, SW7 2AZ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s11262-005-0029-5. RX PUBMED; 16791417. RA Doherty M., Coutts R.H.A., Brasier C.M., Buck K.W.; RT "Sequence of RNA-dependent RNA polymerase genes provides evidence for three RT more distinct mitoviruses in Ophiostoma novo-ulmi isolate Ld"; RL Virus Genes 33(1):41-44(2006). XX DR MD5; 4a3eb1d0e7801685d6a375f04c61cdb1. XX FH Key Location/Qualifiers FH FT source 1..3147 FT /organism="Ophiostoma mitovirus 1a" FT /host="Ophiostoma novo-ulmi" FT /isolate="Ld" FT /mol_type="genomic RNA" FT /country="United Kingdom" FT /db_xref="taxon:348094" FT CDS 408..2756 FT /transl_table=4 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q18L80" FT /db_xref="InterPro:IPR008686" FT /db_xref="UniProtKB/TrEMBL:Q18L80" FT /protein_id="CAJ32466.1" FT /translation="MKYFYTWQRGSKDLFLINKGLLQVLRLVWGDTTLNKIRAFYVLLL FT RLEFIRKHNGLPYLCGYMKACGIFLMKTVGKDPSKLDLTSLGIWVSLTGSGIPRIIPSY FT IRNRIRSHDLKLVKSVLTVFNLYRVLDFAGSLNLATITDPSDGITPPSFDKWMKAFTRK FT FILDFKISSTMAPWLIQSSGPCSKKGCNNTEGWLTAIRRLKHLFTWGEITSILDPYKEG FT KWEKSDFYSFWASIQPLTDNVPIGKLAAKEEPGKVRIFAMVDAVTQWLLKPLHEAIFKL FT LNIFAFDGTFDQIGQLEKFMDRMKDKAPYYYSFDLSAATDRLPLSIQILILKHLVSVPF FT SEAWGRLLTGRTYHLFYKKTSYEVQYQVGQPMGALSSWGMLALTHHLVVQYSAYLAFGK FT VNLFKDYIVLGDDIVIGNHEVSIRYHYLMTEILKVKINPTKGIMSPHSLEFAKRFYVQY FT QDCSPLSLKEFSSFGTVYSSFTASLRKLDISVPNLLTLVGRGGRARGHQGTALSSLLEM FT MRVNLINFSKSQPMTFLNIFFPSLTESMVKSILIDYLASSGKLKDLSLLLRDGPASYPK FT EKRTENLGLDQVKESNKLILANFSQDLKLHKKFFGALDAFMMKTGGNIPQVTKTKLPIK FT DKAPVFFRGVSPLHDTIQFGLTPESRDLIKSLLLGINTSSFCSSELELVPITKLLTLYF FT TDVNSLVTVNGHPFNKVKPNRSFLRNWEEIYSGISLLKLVVSYSSSLHLVRVASDKVLI FT SNFLRSLEKETSPRSFAPTYXDEVDTVSE" XX SQ Sequence 3147 BP; 989 A; 538 C; 583 G; 1034 T; 3 other; tattgttatc aatctagccc cagtaaagtt actggggatc ctcttaagtg agttattaat 60 aattcatcta agagggcctt taactacaag tgccaatcaa gccctcaact cagttgatag 120 acttgacttt gaagctcttg caggcttaca attcttttgg gctgataccc tgattgaatt 180 ggtgtcatag tattgactgc ttttgacctt gattgacttc gcaccataag gggaggagtg 240 atcctctcgc ttatgagaac gaagaaaatg ttaagattta acatttaggt tgcaccctgc 300 ctactgatct caaatgagat gacagaaggt atagaataaa tcattcataa attaagaaca 360 tcactaacaa taatatttta caattactgc aagcgatgct ctttagaatg aagtatttct 420 atacttggca aagaggttcg aaagacctct tcctgattaa taaaggactt ttacaagttc 480 ttagattagt ctggggagat acaactctaa acaaaatcag agcgttttat gtcttgttac 540 taagactgga attcattaga aaacacaatg gccttccata cctttgcggg tatatgaagg 600 catgtggtat tttcttaatg aaaacagtgg gtaaagatcc aagtaaacta gacttgacct 660 ctttaggaat atgagtatct cttactggat ctggtatacc tagaataatt cctagttata 720 tcagaaacag gattagatct catgatctca aattggttaa atcggtttta actgttttta 780 acctttatag ggtcttagat tttgctggtt cattgaacct tgcaactatc acagaccctt 840 ctgatggtat tactcctcct tcttttgaca agtggatgaa agcttttaca agaaaattta 900 ttcttgattt taagatttca tctactatgg ctccttgatt gatacaatca agtgggcctt 960 gttcaaagaa gggttgtaat aatacagaag gttgattaac agctattaga agattaaaac 1020 acctcttcac atgaggtgag ataacttcta tcttagatcc ttacaaagaa ggtaaatggg 1080 agaaatccga tttctactcc ttctgagctt ctattcaacc tttaactgat aacgtaccaa 1140 ttggtaagtt agcagcaaaa gaagaaccag gaaaagtgag aatattcgct atggttgatg 1200 cagtcactca gtgactgttg aaaccattgc atgaagcaat ttttaaattg cttaatatct 1260 tcgcttttga tggaactttt gaccaaatcg gtcaattgga gaagttcatg gatagaatga 1320 aggataaagc tccttattac tattcttttg acctatcggc agccacagac agactaccat 1380 taagtataca gattctgata ttgaaacact tggtttcagt accattctct gaagcttggg 1440 gtaggctgtt gactggaaga acctatcact tgttttataa gaaaacaagt tatgaagttc 1500 aataccaagt aggtcaaccc atgggagcat tatcttcttg aggtatgctg gctttgactc 1560 accatttggt ggttcaatat tcagcgtacc ttgcctttgg aaaggttaat ctctttaaag 1620 attacatagt cttaggagat gatatcgtta ttggaaacca tgaggtttct ataaggtatc 1680 attacctgat gactgaaatc ttaaaagtta agattaatcc tacaaargga ataatgtccc 1740 ctcactctct tgaatttgca aaaagatttt atgttcaata ccaagattgc tcccctttat 1800 cattaaagga gtttagctct tttggtactg tctattcatc ttttactgca agtctaagaa 1860 agttggatat ttctgtacct aaccttctta ctttagtagg aagaggggga agagcaagag 1920 gtcatcaagg tacggcacta tcatctctat tagagatgat gagagttaat ttaattaact 1980 tctcaaagtc ccaacctatg actttcttga atatcttctt cccttctctt actgagagta 2040 tggttaagtc aatcttaatt gattatctag cctcttcagg taagttgaag gatctgtctc 2100 tattgttaag agatggtccc gcttcttatc ctaaggagaa aagaacagaa aatcttgggt 2160 tagatcaagt taaagaatct aacaaactga ttttggctaa ttttagtcaa gatctaaagc 2220 ttcacaagaa attctttgga gctctagayg cgttcatgat gaaaacagga ggtaatattc 2280 cccaggtaac taagactaag ttacctatta aggataaagc tccagttttc tttagaggag 2340 tttctcctct tcatgacaca attcagtttg gattaactcc tgagagtaga gatctaataa 2400 aatctctctt actaggaatt aatactagtt ctttttgctc aagtgaactt gagttggtgc 2460 cgataactaa attgttgacc ctgtatttta cagatgttaa cagtttagtt actgtgaacg 2520 gtcacccttt caataaggtt aaaccaaata gatctttctt aagaaattga gaagaaatct 2580 attctggtat ttctttattg aaattagtag taagctatag ctcgtctcta catttggtta 2640 gagttgcctc agataaggtt ttaatatcta acttcttaag aagcttagaa aaagaaacct 2700 ctccaagatc atttgctcca acttatrtag atgaggtgga tactgtttct gagtaagaaa 2760 ctttattcca tctccattct atctctaata ggtctaatga ttaaggatga atctgaatta 2820 tattaatcag atttacctat aactgaaaca agagtaaact cttgagtcta gactagtacc 2880 actttaatta caacagctaa gctggacctc aaatcaatga ggtttggtct gtactattat 2940 tattggagtt tgaaatctcc ttcacccata tctgggatag taatattaag atcaagtaag 3000 taaataaggg tgttattaga gaaggtttca cgcggtaaaa agaccacgtg atctggattt 3060 gatggctatt agttatagta caagtgtaca atatctcatc taagagagcc ccctagctta 3120 ggggggtacg aaaggtagac ttatcaa 3147 //