ID   AM087202; SV 1; linear; genomic RNA; STD; VRL; 1744 BP.
XX
AC   AM087202;
XX
DT   29-JUN-2006 (Rel. 88, Created)
DT   29-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Ophiostoma partitivirus 1 RdRp gene for RNA-dependent RNA polymerase
XX
KW   RdRp gene; RNA-dependent RNA polymerase.
XX
OS   Ophiostoma partitivirus 1
OC   Viruses; Riboviria; Partitiviridae; Gammapartitivirus.
XX
RN   [1]
RP   1-1744
RA   Buck K.W.;
RT   ;
RL   Submitted (21-SEP-2005) to the INSDC.
RL   Buck K.W., Biology, Imperial College London, Sir Alexander Fleming
RL   Building, London, SW7 2AZ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1007/s11262-005-0028-6.
RX   PUBMED; 16791416.
RA   Crawford L.J., Osman T.A.M., Booy F.P., Coutts R.H.A., Brasier C.M.,
RA   Buck K.W.;
RT   "Molecular characterization of a partitivirus from Ophiostoma himal-ulmi";
RL   Virus Genes 33(1):33-39(2006).
XX
DR   MD5; 71bbabdf4dfc025830190a09a83bd383.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1744
FT                   /organism="Ophiostoma partitivirus 1"
FT                   /segment="S1"
FT                   /host="Ophiostoma himal-ulmi"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /db_xref="taxon:347482"
FT   CDS             70..1689
FT                   /gene="RdRp"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:Q18L82"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q18L82"
FT                   /protein_id="CAJ31886.1"
FT                   /translation="MSDFTQDPTQHFVETEGSHLVDALHLGPQNTRSTTSQDILPDKHA
FT                   GRYLKQIAKYGGYGTYQSTSNTDPWVRETLKHFDRKQYEELRGFTRRPDGTQGMYRSLA
FT                   KFDGEDQSFHLLSRSQQRVMRKSIRKAFTAFKLPYKREPLDWHEVGPFLRRDTAAGSTF
FT                   MGSKKGDVMEEIYHEARWLGHRMKQNGDRRFDPTQMRFPPCSAGQRGGMSSIDDPKTRL
FT                   VWIYPAEMLTVEGFYAPRMYHDFMNDSNSPMLNGKSSQRLYTEWVCGVREGEKLYGLDF
FT                   SSFDTKVPPWLIRVAFNVLRQNVAWDTFEGKPVSKRDRQKWRNVWDAMVWYFINTPILM
FT                   PDGRMFRKYRGVPSGSWWTQMIDSVVNYILVDYLAGCQEVEIRKLKVLGDDSAFVSGKD
FT                   FSFSQATADCIPTGMVLKPEKCDVTDNPSEFKLLGVKYRDGRVYRPTLEWSQLALYLES
FT                   NVPDVGVGLSRLIGLWLGGAMWDKQFCAYMDYYQSSYQCPEEGWFSKEQRRWLEIVHSG
FT                   KSPRGWTTKRSLFWRSIFYAFG"
XX
SQ   Sequence 1744 BP; 432 A; 429 C; 444 G; 439 T; 0 other;
     accgaaaata gtctatctgt ttaccactgt taccagtggg ttttattcct ccttcatttc        60
     ttgcgccgaa tgtctgattt cacgcaagat ccaacccaac actttgtcga aactgagggg       120
     tctcatttag ttgacgcact ccacctgggt cctcaaaaca cccggtcaac caccagtcaa       180
     gacatactac cagacaagca cgccgggcga taccttaagc aaatcgccaa atatggtggg       240
     tacggcacct accagtccac ctcgaacaca gatccctggg ttcgagagac tttaaaacat       300
     tttgatcgaa aacaatacga agaactccgt ggctttaccc gtcgtccgga tggcactcag       360
     ggaatgtacc gttccctggc caaattcgac ggtgaagacc agtccttcca tctcctgtcg       420
     cgctcgcaac agcgcgtgat gcgtaaatcc attcgtaagg cgtttaccgc cttcaaattg       480
     ccttacaagc gtgaaccgct tgactggcat gaggtaggac cattcctgcg ccgtgatacg       540
     gctgctggtt ccaccttcat gggtagcaag aaaggagatg tcatggaaga aatctaccat       600
     gaagcgcggt ggcttggcca ccgcatgaag cagaacggag atcgacgttt cgatcccacc       660
     cagatgcggt ttcccccgtg ttcggcagga cagcgtgggg gtatgtcgtc tatcgatgac       720
     cccaaaacgc gcctggtgtg gatctacccc gctgagatgc tcacggtgga ggggttctac       780
     gcccccagaa tgtatcatga ctttatgaat gatagcaatt ccccgatgct caacggaaaa       840
     tcatcacaac gcctatacac ggagtgggtt tgtggtgtga gggaaggtga aaaactatac       900
     ggactggact tcagttcgtt tgataccaag gttccaccct ggttgattcg tgtggcattt       960
     aacgttcttc gacagaacgt ggcctgggat acctttgaag gtaagcccgt ttcaaaacga      1020
     gatcgccaga agtggagaaa cgtgtgggac gccatggtat ggtatttcat caatacccct      1080
     atcctgatgc cagatggacg tatgttcaga aagtatcggg gtgtaccttc cggttcttgg      1140
     tggacccaga tgatcgactc agttgtgaat tacatactgg ttgattacct ggcggggtgc      1200
     caagaagtag agatccggaa gttaaaggtg ctgggagatg acagcgcttt cgtgtcgggt      1260
     aaggattttt ccttttccca agcgacagct gactgtatcc caactggaat ggtcttaaaa      1320
     cctgagaaat gtgacgtaac ggataaccca tccgaattca aacttctcgg tgtgaagtac      1380
     cgtgacggcc gagtgtatcg acccactctt gagtggtccc aacttgcgct gtatctagag      1440
     tccaacgttc ctgacgttgg agtagggcta tcccgtttga ttggcctgtg gttaggtgga      1500
     gcgatgtggg acaagcaatt ctgtgcatac atggattact atcagtcctc ataccagtgc      1560
     cctgaagagg ggtggttctc taaagaacaa aggcgctggc ttgaaatcgt tcattcaggc      1620
     aaaagtcctc gaggctggac aacaaaacgc agtttattct ggcgttctat cttttatgcc      1680
     ttcggttaaa tcgcacttcg cacttcgtgc gtgacaatac caatctgttt atcagggaaa      1740
     ttgt                                                                   1744
//