ID AM072756; SV 1; linear; genomic RNA; STD; VRL; 5612 BP. XX AC AM072756; XX DT 07-FEB-2006 (Rel. 86, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 2) XX DE Sugarcane yellow leaf virus complete genome, isolate REU-YL2 XX KW aphid transmission factor; capsid protein; complete genome; KW movement protein p17; multifunctional protein; ORF0; ORF1; ORF2; ORF3; KW ORF4; ORF5; RNA-directed RNA polymerase. XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5612 RA Royer M.; RT ; RL Submitted (21-JUL-2005) to the INSDC. RL Royer M., UMR BGPI, CIRAD, TA 41K, Campus International de Baillarguet, RL Montpellier cedex 5, 34398, FRANCE. XX RN [3] RX DOI; 10.1007/s00705-005-0712-9. RX PUBMED; 16453082. RA Abu Ahmad Y., Rassaby L., Royer M., Borg Z., Braithwaite K.S., Mirkov T.E., RA Irey M.S., Perrier X., Smith G.R., Rott P.; RT "Yellow leaf of sugarcane is caused by at least three different genotypes RT of sugarcane yellow leaf virus, one of which predominates on the Island of RT Reunion"; RL Arch. Virol. 151(7):1355-1371(2006). XX DR MD5; f0b3651089b86b62b5472843037c0d82. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5612 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar R490" FT /isolate="REU-YL2" FT /mol_type="genomic RNA" FT /country="Reunion:La Mare" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 1..771 FT /gene="ORF0" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:Q2L3F6" FT /protein_id="CAJ26279.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRNIVVTMVPILLLPDTTIGRHIHIKRQYLKSV FT LLWLARNKLXYRVKRCRSKRFXLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG FT YDSFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDDDDSGLETDFNN FT LSLGRPYINGLPPDEKIIFIHSNLVGRSTYSHDI" FT CDS join(176..1669,1669..3387) FT /gene="ORF2" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /note="ribosomal slippage" FT /db_xref="GOA:Q2L3F5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q2L3F5" FT /protein_id="CAJ26280.1" FT /translation="MAPTLPFTTGWSTFAILLLLWYQFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSXIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIRLYVCAFTITIRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVICIHRRLFASRGDEKLVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDAFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKLPPPDKPVENSTAKEQTPASTVEKATVADSDDSRPGKRAKWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAIDSKDRSELHCNEGGGETAASSTEQTAAERREEVAQKT FT QDLEHFFQAAYKWEESTSDIPGFRKCGRLPALYHPPKPKSTQWGERIISEHPEMAAKVA FT GFGWPSFGAQAEETSLRLQAARWLKRAESAEKPTAAQRKLVIDRVVKAYEPCKTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLNKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFREMSPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSRTVGCPPAEVIHGWRDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRVRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 176..2128 FT /gene="ORF1" FT /product="multifunctional protein" FT /db_xref="GOA:Q2L3F4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q2L3F4" FT /protein_id="CAJ26281.1" FT /translation="MAPTLPFTTGWSTFAILLLLWYQFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSXIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIRLYVCAFTITIRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVICIHRRLFASRGDEKLVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDAFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKLPPPDKPVENSTAKEQTPASTVEKATVADQMTPDQGNEPSGADHLKIP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLHQARNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVTSPGSGNAADSPRYTIPQNRRAHNGGSASSQSTQRWRPKSP FT VSGGPPSAPKPRRQV" FT CDS 3582..5612 FT /transl_except=(pos:4170..4172,aa:OTHER) FT /gene="ORF5" FT /product="putative aphid transmission factor" FT /note="stop codon readthrough" FT /db_xref="GOA:Q2L3F3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2L3F3" FT /protein_id="CAJ26282.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLPAGYRVNNRERAIPFV FT LFPIDKGRYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTVSNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKIMEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYNPEAPE FT ESENEGTESTPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTFCDTLRQADKVRRALMANASRSASPPPSTTEVPVLGATDTASLS FT GXLRGGSXRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLGGGSLRGGNLQVLPE FT ATREQRREYERLKNSQGKTVARAHAKEHGYKPPKSSTSLFG" FT CDS 3582..4172 FT /gene="ORF3" FT /product="capsid protein" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="CAJ26283.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3613..4065 FT /gene="ORF4" FT /product="putative movement protein p17" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="CAJ26284.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5612 BP; 1499 A; 1473 C; 1354 G; 1281 T; 5 other; atgcttttca acgaattctc tgttgaggga attaaattca gagcgcacga aagcacttca 60 cctgtctttc gtggggaggt ttccaggtgt ttgacttact acagagtctt cgcctgcaag 120 tgggttgagc tgacttatca agatccgctc acacgccatc tagtacaaga ctactatggc 180 cccaacactc ccgtttacaa ctggctggag cacattcgca atattgttgt tactatggta 240 ccaattttgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac 300 ctcaagtctg tccttttatg gcttgcccgc aacaaactct wctatagagt taagagatgc 360 cgttccaagc ggtttrtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag 420 ctactccagt atgctgggtt ggatgttttt caagatgtgg ctcgattgca agactttctc 480 gagagaggct acgactcttt ccgatcggtt cttggagtac accttctcga acacgaaagg 540 tttgttagtc gaattcttga acaacctatt atggaacctg atcaggctgt acgtttgtgc 600 tttcactatc acaatacgct tgatcatgac gatgacgatt ctggcctgga aaccgatttt 660 aataatctgt ctcttggtcg tccttacatc aatggtctac cacctgatga gaaaattatt 720 ttcattcatt caaatctggt gggtcgtagc acctattctc atgatatata ggaccgtcat 780 atgcattcac agaaggttgt tcgcttcacg tggggacgag aaattggtcc aaggctttaa 840 gagcttcgcc gtccccatgt caccaccggg acactcagtg cttgagatag tacaccccga 900 tgattctcac atgggatatg catcctgtgt tcgattgaag aacggggaag aggctctcat 960 gacttccgta cactgcataa gcgatgcttt caaagttcgc tcgttcagaa acggaatcaa 1020 gattcctcta acggaattcc aagtgctact gcccgccaat gcgatggaca ttgttcttct 1080 tcgaggccca cctgagtgga agtccatcct tggagccaaa gcagcccact tcactcctgt 1140 caaccagctc aacaaaggag ctgtttcctt ctttattttt gacaaagagt ggatgatgca 1200 caatgcaaaa gttacgggaa ccgatggctt ttatgccaca gttcttagca acactgaaaa 1260 gggctacagt ggcgctccct actggaacgg caaatccata gtgggagttc ataaagggca 1320 tgtgtacgga gacgactcca aaaactacaa tctcatgtcg ccaatacccc ccgtcaaagg 1380 gttgacagcg cctaattttg tgtacgagtc tccgtctctg caaggagatg tctttagcga 1440 cgccgacgtt tcagacatcg ccgactacgc tgaagaagtg tatgagaaaa cccttgcaga 1500 gcccaaagtg tggaaacccg ccagcggcaa atactggtgg gaaatggctg aagaagagga 1560 tgattttgtc gttgaggcta aacttcctcc ccctgataaa cctgttgaga actctacggc 1620 aaaagagcag actccagctt cgactgttga gaaagctaca gttgccgatc agatgactcc 1680 agaccaggga aacgagccaa gtggcgccga ccacttaaaa ataccggaat ccaccccgct 1740 caagcaagac gaatctacaa aagagttgct caacaacatc gtctcgcaat tgattcaaaa 1800 gatcgatctg agctccattg caacgagggt ggaggagaaa ctgctgcatc aagcacggaa 1860 caaacagcag cagaacggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 1920 ttccaagccg catacaaatg ggaagagtcc accagtgaca tccccgggtt caggaaatgc 1980 ggcagactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggggagcgc 2040 atcatctcag agcacccaga gatggcggcc aaagtcgccg gtttcgggtg gccctccttc 2100 ggcgcccaag ccgaggagac aagtctgaga ctccaagcgg cccgctggct caaacgagct 2160 gagtcagcgg aaaagccgac cgcagcacaa cgcaagctcg tcattgatcg tgtggtcaag 2220 gcatatgaac cgtgtaaaac caatgcccca cacaccagct cctctggcag cctcatctgg 2280 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaacttga cgcaggaata 2340 ggtctcccat acaaacttct caacaaagac actcatcgtc aaatggtaga agaccccaaa 2400 ttcctgccgc tcctgacgcg attaacctgg aaccgtttac agaagatgtc ccaggttgat 2460 ttccgggaga tgtcacctga acaactagtg agagaaggat tgtgcgaccc gattcgtttg 2520 ttcgtcaaag gggaaccgca caagcaggcc aagcttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgtttcaagc acaaaacaag 2640 agagagatag ccttgtggag agctatccct tcaaagcccg gttttggctt atccacagac 2700 agggaagcac gcgaattcat cgaatccctg tcaaggacag tagggtgtcc cccagcggaa 2760 gttattcatg gctggaggga taagatcgta cccaccgact gttccggttt tgactggtca 2820 gtcgccgact ggatgctcga agacgacatg gaagtgagaa accttctcac catcaacaac 2880 aacgagctaa cccgccgcct tcgggcgtgt tggttgaagt gcatcactaa ttcagtgatt 2940 tgcacgtctg gcggtgtcct gtacgcccaa actcaccctg gtgtgcagaa atctggatct 3000 tacaacacga gttcatccaa ttccagggtt cgagttatgg ccgctttcca ttgcggtgct 3060 gactgggcga tagccatggg ggatgatgca cttgaatccc cgaactccaa tattaacgcg 3120 tatcaaaaat tggggtttaa agtcgaggtg gcctcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aggacctcgc caggccgttg aatgtaaaca aaatgcttta tcgtttgata 3240 tttggatata atccggcctg tggcaacgcg gaggtattgt gcaattacct ccaagctgtg 3300 gcttccgttc ttaacgagtt acgccatgat ccacagctag ttgctaccct ccatgagtgg 3360 ctggtccctg gcgccgccac aaaataaata cggaggggca ttccgagcca ccacataggt 3420 tgcaagagtg gaacggaaag tcctataaat aagccgcgcg attctggatt acaagcttct 3480 agcgggaatc ctcatcggtg ttatcatcgc aattccccta gtgatcatag cggcttacct 3540 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 3600 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 3660 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 3720 acgctgtgcg aggaccggga ggaagaagca accgggatgt tctcactttc acggttgacg 3780 atctcaaagc caactcaacc gggatcctca aattcggacc gaacttatct cagtacgcag 3840 cgttcaacaa tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc 3900 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa gtggatacat 3960 cctgctccca aacaacaaca ggctccaaga ttactagctt ccccgtcaag aggaacgcca 4020 agaaagtctt cccggccccc ttcatcaggg ggaaagattt catgactacg tcagctgacc 4080 aattttggtt gctgtataaa ggaaatggag actcgagcct agcaggacaa ttcgtctgcc 4140 gatttgaatg tttattccag aatcccaaat aggtaggcga cgctccccca acacccacac 4200 caacaccaac cccacccgcc ccgaccccgg caccggctcc taagtatttt ggataccaag 4260 gagtgccgaa taacatcgtg aaaacaagag gtaactctga atatctagat gtgggtccgc 4320 tcgagaatgt gaccatgtac ctctggaaag acgaatcgtg gagcatcgag caactgccag 4380 ccggatatcg cgtgaataat cgagaacgtg ccataccctt tgtccttttc ccaatagaca 4440 aaggcagata ctccgtgttt atacaatgtg agggctttaa ggcagttaaa gcaaaaggag 4500 gcacgaacga cggcaaaatg agcgggtttc tctgtgacaa tgcaaatctc gcgggttggc 4560 gagcgtacgc atatagtggg tgtacagtct ctaattatag aacatcagac tcaaatgttc 4620 ctggtcatcc ggacatgaaa gtcaacggtg gatcttttac cgaccaattg gtcgagagag 4680 acttttcttg ttcatttcac ctcgaggtgc ctcaacaagg ctactttggc cttgaggccc 4740 cacccattga aaagagtgat catttcaatt ttgtggtgtc ttacgctaat ttcactgaca 4800 aaatcatgga atggggttca atctccgtag cgatagacga ggtgaatgac ggagcgtata 4860 gtagatcaaa atgggataag actactgcaa tgagtgctcg tttaccgact caggtgagcg 4920 ccccttccga ggtttacaac ccggaagcac ctgaggaatc ggaaaacgaa gggacggaga 4980 gtacgcctcc agccccgaac ccggcactgg gaccggacaa cccagcaacc aaagagccca 5040 cgccgaaaat cgtggacaat ccggacccga aggttctcaa ctggcttaac aaccagcgag 5100 acaaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgctcct ccacctcccc 5160 cgtctctaac cccgactttc tgcgacactt tgagacaggc ggataaggtc cggagagctc 5220 tcatggctaa cgcttctcgt tcagcctcac cccccccgtc gactaccgaa gttcctgttc 5280 ttggagccac tgacaccgct tctttaagtg gatyattacg cggtggctcc ytcaggggta 5340 atttgggttc tcgcccctct cttccgaggg tygctgacag ccctccccgc tctgtaagtc 5400 cggctcgttc cgagaccagt actctacaag gcggttccct gggtggtggt tcgctaaggg 5460 gtggcaacct ccaggtttta cctgaggcca caagagagca gaggagggaa tatgaacgtc 5520 tcaaaaattc acaagggaag accgtggcac gagcccatgc taaagaacac ggttacaagc 5580 caccgaagtc ttccacctcc ttatttggtt ga 5612 //