Dbfetch
ID AM072753; SV 1; linear; genomic RNA; STD; VRL; 5612 BP. XX AC AM072753; XX DT 07-FEB-2006 (Rel. 86, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 2) XX DE Sugarcane yellow leaf virus complete genome, isolate PER-YL1b XX KW ORF0; ORF1; ORF2; ORF3; ORF4; ORF5; capsid protein; complete genome; KW movement protein p17; multifunctional protein; aphid transmission factor; KW RNA-directed RNA polymerase. XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Sobelivirales; Solemoviridae; Polerovirus. XX RN [1] RP 1-5612 RA Royer M.; RT ; RL Submitted (21-JUL-2005) to the INSDC. RL Royer M., UMR BGPI, CIRAD, TA 41K, Campus International de Baillarguet, RL Montpellier cedex 5, 34398, FRANCE. XX RN [3] RA Abu Ahmad Y., Rassaby L., Royer M., Borg Z., Braithwaite K.S., Mirkov T.E., RA Irey M.S., Perrier X., Smith G.R., Rott P.; RT "Yellow leaf of sugarcane is caused by at least three differentgenotypes of RT sugarcane yellow leaf virus, one of which predominates on theIsland of RT Reunion"; RL Arch. Virol. 151(7):1355-1371(2006). XX DR MD5; 9f844ab2d18d6d2f4f32040c1641d28d. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5612 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar H50-7209" FT /isolate="PER-YL1b" FT /mol_type="genomic RNA" FT /country="Peru" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 1..771 FT /gene="ORF0" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:Q2L3H4" FT /protein_id="CAJ26267.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT XLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG FT YDTFRSVLGVHLLEHERFVSRILEQPIMEPDQAVRLCFHYHNTLDHDDDDSGLEADFNN FT LSLGRPYIDGLPPNEKIIFIHSNLVGHSTSSHNV" FT CDS join(176..1672,1672..3387) FT /gene="ORF2" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /note="ribosomal slippage" FT /db_xref="GOA:Q2L3H3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q2L3H3" FT /protein_id="CAJ26268.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SXYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWAIAPLLIMYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPTSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEKVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPLPDKPVENATAKEQTPALXVEKATVADKADSRPGKRAKWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASGPEQTAAERREEVAQKT FT QDLEHFFQAAYKWEESTSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA FT GFGWPSFGAQAEETSLRLQAARWLKRAGLAEKPTEKQRKLVIDRVVKAYELCKTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLRKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAEVIHGWRDKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTINNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCSADWAIAMGDDALESPNSDINAYQRLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLYRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 176..2128 FT /gene="ORF1" FT /product="multifunctional protein" FT /db_xref="GOA:Q2L3H2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q2L3H2" FT /protein_id="CAJ26269.1" FT /translation="MAPTLPFTTGWSTYALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SXYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWAIAPLLIMYRTVMWIHRRLFASRGDEKMVQGFK FT SFAVPTSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANVMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKITGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEKVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEANSPLPDKPVENATAKEQTPALXVEKATVADKPTPDQGNEPSGADHLKTP FT ESTLLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPATSQDSGNAVNSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPRRRV" FT CDS 3582..5612 FT /transl_except=(pos:4170..4172,aa:OTHER) FT /gene="ORF5" FT /product="putative aphid transmission factor" FT /note="stop codon readthrough" FT /db_xref="GOA:Q2L3H1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2L3H1" FT /protein_id="CAJ26270.1" FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGVLKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPASKY FT LGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWQDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAIDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPXTPE FT QPTDEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYAPPPPPSLTPTSADTLRQADKVRRALMANASRAASPPPMTTEVPILGAADTASLS FT GSLXGGSLRGNLGSRPSLPRVXDSPPRSVSPVRSETSTLQGGSLSGGSLRGGNLQALPE FT ATREQRREYERLKNSQGXTVARAHAKEHGYKPPKSSSSLFG" FT CDS 3582..4172 FT /gene="ORF3" FT /product="capsid protein" FT /db_xref="GOA:Q2L3H0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q2L3H0" FT /protein_id="CAJ26271.1" FT /translation="MNTGANRPRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGVLKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3613..4065 FT /gene="ORF4" FT /product="putative movement protein p17" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q2L3G9" FT /protein_id="CAJ26272.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMSSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5612 BP; 1498 A; 1465 C; 1347 G; 1294 T; 8 other; atgcttttta acgaattctc tgttgaggga attaaattca gagcacacga aagcacttca 60 cccgtctttc gtggggaggt ttccaggtgt ttgacttact acagagtctt cgcctgcaag 120 tgggttgagt tgacctatca agatccactc acacgccatc tagtacaaga ttactatggc 180 cccaacactc ccgtttacaa ctggctggag cacatacgcc ttattgttgt cactatggtg 240 cctattctgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac 300 ctccagtctg tccytttatg gcttgcccgc aacaaactct actatagagt taagagatgc 360 cgttccaagc ggtttgtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag 420 ttactccagt atgctgggtt ggatgttttt caagatgtgg ctcgattgca agactttctc 480 gagagaggct acgacacttt ccgatcggtt cttggagtac accttctcga acacgaaagg 540 tttgttagtc gaattcttga acaacctatt atggaacctg atcaagctgt acgtttatgc 600 tttcactatc ataacacgct tgatcatgac gatgacgatt ctggcctgga agccgatttt 660 aataatctgt ctcttggtcg tccttacatc gatggtctac cacctaatga gaaaattatt 720 ttcattcatt caaatttggt gggccatagc acctcttctc ataatgtata ggaccgtcat 780 gtggattcac agaaggttgt tcgcttcacg tggggacgag aaaatggtcc aaggtttcaa 840 aagttttgcc gtccccacgt caccaccagg acactcagtg cttgagatag tacaccctga 900 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag aggctctcat 960 gacatctgtt cactgcataa gcgattcttt taaagttcgc tcgttcagga atggtatcaa 1020 gatccctcta acggaattcc aagtgctgtt gcccgccaat gtgatggaca ttgttcttct 1080 tcgaggccca cccgagtgga aatccatcct tggagccaaa gcagcccact tcactccagt 1140 taaccagctc aacaaaggag ctgtgtcttt cttcattttc gataaggagt ggatgatgca 1200 caatgcaaag attacaggaa ctgacggttt ttatgccaca gttctcagta acactgaaaa 1260 gggctacagt ggcgccccct attggaatgg gaaatctata gtaggggtgc ataaagggca 1320 cgtgtacgga gacgattcca agaattacaa tcttatgtca ccgattcccc ctgtcaaggg 1380 gttaacggcg cctaattttg tgtatgagtc tccgtctctg caaggagatg tctttagcga 1440 cgccgacgtt tcagacattg ctgattacgc cgagaaggtg tatgagaaag cccttgcaga 1500 gcctaaagtg tggaaacctg ccagcggcaa atactggtgg gaaatggccg aagaagagga 1560 tgattttgtc gttgaggcaa attcacccct ccctgataaa cctgttgaga acgctacagc 1620 aaaagagcag actccagctt tgrctgtcga gaaagctacg gttgctgata agccgactcc 1680 agaccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat ccaccctgct 1740 caagcaagac gaatctacaa aagagttgct caacaacatc gtctcgcagt tgattcaaaa 1800 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc aggcccagaa 1860 caaacagcag cagaacggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 1920 ttccaagccg catacaaatg ggaagagtcc accagcgaca tcccaggatt caggaaatgc 1980 ggtaaactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggagagcgc 2040 atcatctcag agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc 2100 ggcgcccaag ccgaggagac gagtctgaga ctccaagcgg cacgctggct taaacgagct 2160 gggttagcgg aaaagccgac agaaaaacaa cgcaagctcg tcattgatcg tgtggtcaag 2220 gcatatgaac tgtgcaaaac caatgcccca cacaccagct cctctggcag cctcatctgg 2280 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaactcga cgcaggaata 2340 ggtctcccat ataaacttct tcgcaaagac actcaccgtc agatggtcga agaccccaaa 2400 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc ccaggttgat 2460 ttccaggaga tgactcctga acaactagtg agagaaggat tgtgcgatcc gattcgtttg 2520 ttcgtcaaag gagaaccgca caagcaggca aagcttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgttccaagc acaaaacaaa 2640 agagagatag ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac 2700 agggaagcac gcgaattcat cgaatccctg tccaagacag tagggtgttc cccagcagaa 2760 gtcattcatg gctggaggga caagatcgta cccaccgact gttccggttt cgactggtca 2820 gtcgccgact ggatgctcga agacgacatg gaagtgagaa atcttctcac tatcaacaac 2880 aacgagctaa cccgccgcct cagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt 2940 tgcacgtccg gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct 3000 tacaacacga gttcatccaa ttccaggatt cgagtaatgg ctgcttttca ttgcagcgca 3060 gattgggcga tagccatggg agacgatgca cttgagtctc caaactccga catcaacgcg 3120 tatcaaaggt tggggtttaa agtcgaggtt gcctcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aggacctcgc caggccgttg aatgtgaaca aaatgcttta tcgtttgatc 3240 ttcggataca atccggcctg tggcaacgcg gaggtactgt gcaattacct ccaagctgtg 3300 gcttctgttc ttaacgaact tcgccatgat ccacagctag ttgctaccct ccatgagtgg 3360 ttggtccctg gcgccgccac aaaataaata cggaggggca tcccgagcca ccacataggt 3420 tgcaagagtg gaacgggaag tcctatagac aagccgcgcg attctggatt acaaacttct 3480 agcgggggtt ctcattggtg tcctcatcgc aatcccccta gtaatcatag cggcttacct 3540 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 3600 gcccacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 3660 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 3720 acgctgtgcg aggaccggga ggaagaagca accgggatgt cctcactttc acggttgacg 3780 atctcaaagc caactcaacc ggggtcctca aattcggacc gaacctatct cagtacgcag 3840 cgttcaacaa tggcttactc aaagcctacc atgagtataa aatcacaagt ctcactattc 3900 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa gtggatacat 3960 cctgctccca aacaacaaca ggctccaaga ttactagctt ccccgtcaag aggaacgcca 4020 agaaagtctt cccggccccc ttcatcaggg ggaaagattt catgactacg tcagctgacc 4080 agttttggtt gctgtacaaa gggaatggag actcgagcct agcaggacaa ttcgtctgcc 4140 gatttgaatg ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc 4200 caacaccaac cccacccgct ccgaccccgg caccggcttc taagtatctt ggataccaag 4260 gagtgccgaa caacatcgtg aaaacaagag gaaactctga atatctagat gtgggtccgc 4320 tcgaaaatgt aaccatgtac ctttggcaag acgaatcgtg gagcattgag caactgtcag 4380 ccggatatcg cgttaacaat cgagaacgtg ccataccctt tgtcctcttt ccagtggata 4440 aaggcaaata ctccgtgttc atacaatgtg agggctttaa ggcagttaaa gccaaaggag 4500 gcacgaacga cggcaagatg agcgggtttc tttgtgacaa tgcaaatctc gcgggttggc 4560 gagcatacgc atatagtggg tgtacaatct ctaattatag aacatcagac tctaatgtcc 4620 ctggtcatcc agacatgaaa gttaatggtg gatcttttac cgaccagttg gttgagagag 4680 atttttcttg ttcatttcac ctcgaggtgc ctcaacaagg ctattttggc ctagaggccc 4740 cgcccattga aaagagtgat catttcaatt ttgtggtgtc ttacgctaac ttcactgata 4800 aaatcctgga atggggttca atctccgtag cgatagacga ggtgaatgac ggggcgtata 4860 gtagatcaaa atgggataag actactgcma tgagtgctcg tttgccgacc caggtgagcg 4920 ccccttctga rgtttacacc ccggraacac ctgagcaacc gactgacgaa gggacggaga 4980 gtatgcctcc agccccgaac ccggcactgg gaccggacaa cccagcaacc aaagaaccca 5040 cgccaaaaat cgtggataat ccggacccaa aggtactcaa ctggctcaac aaccagcgag 5100 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgctcct ccaccccccc 5160 catctctaac cccgacttct gccgacactt tgagacaggc ggataaggtc cggagagctc 5220 tcatggctaa cgcttcgcgc gcagcctcac ctccccccat gactaccgaa gttcctattc 5280 ttggggccgc tgacaccgct tctctaagtg gatcattacr cggtggctcc ctcagaggta 5340 atttgggttc tcgcccctcc cttccgaggg tckctgacag ccctccccgt tctgtaagtc 5400 cggttcgttc tgagaccagt actctacaag gcggttctct gagtggtggt tctttgaggg 5460 gtggtaacct tcaagctttg cctgaggcca caagagagca aaggagggaa tatgaacgtc 5520 ttaagaattc acaaggaarg acggtggcaa gagcccatgc taaagaacac ggttacaaac 5580 caccgaaatc ttcctcctcc ttatttggtt ga 5612 //