ID AM072750; SV 1; linear; genomic RNA; STD; VRL; 5612 BP. XX AC AM072750; XX DT 07-FEB-2006 (Rel. 86, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 2) XX DE Sugarcane yellow leaf virus complete genome, isolate BRA-YL1 XX KW aphid transmission factor; capsid protein; complete genome; KW movement protein p17; multifunctional protein; ORF0; ORF1; ORF2; ORF3; KW ORF4; ORF5; RNA-directed RNA polymerase. XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5612 RA Royer M.; RT ; RL Submitted (21-JUL-2005) to the INSDC. RL Royer M., UMR BGPI, CIRAD, TA 41K, Campus International de Baillarguet, RL Montpellier cedex 5, 34398, FRANCE. XX RN [3] RX DOI; 10.1007/s00705-005-0712-9. RX PUBMED; 16453082. RA Abu Ahmad Y., Rassaby L., Royer M., Borg Z., Braithwaite K.S., Mirkov T.E., RA Irey M.S., Perrier X., Smith G.R., Rott P.; RT "Yellow leaf of sugarcane is caused by at least three different genotypes RT of sugarcane yellow leaf virus, one of which predominates on the Island of RT Reunion"; RL Arch. Virol. 151(7):1355-1371(2006). XX DR MD5; 302b67c88e4ec4ec2b5d3640389d4510. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5612 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum hybrid cultivar SP71-6163" FT /isolate="BRA-YL1" FT /mol_type="genomic RNA" FT /country="Brazil" FT /isolation_source="leaf" FT /db_xref="taxon:94290" FT CDS 1..771 FT /gene="ORF0" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:Q2L3J2" FT /protein_id="CAJ26249.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQDYYGPNTPVYNWLEHIRLIVXTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHYHNTLDHDDDDSGLETDFDN FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI" FT CDS join(176..1669,1669..3387) FT /gene="ORF2" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /note="ribosomal slippage" FT /db_xref="GOA:Q2L3J1" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q2L3J1" FT /protein_id="CAJ26250.1" FT /translation="MAPTLPFTTGWSXYALLLXLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRRDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFNNADISDIADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEARSPPPDKPVENATAKEQTPASTVEKAMVADSADSRPGKRAKWRRPLKNT FT GIHPAQARRIYKRVAQQHRLAVDSKDRPELHCNEGGGETAASGPEQTAAERREEVAQKT FT QDLEHFFQAAYKWEESTSDIPGFRKCGKLPALYHPPKPKSTQWGERIISEHPEMASKVA FT GFGWPSFGAQAEETSLRLQAARWLKRAESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHT FT SSSGSLIWSDFLKDFKEAVNSLELDAGIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWN FT RLQKMSQVDFQEMTPEQLVREGLCDPIRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLV FT ARVLFQAQNKREIALWRAIPSKPGFGLSTDREAREFIESLSKTVGCSPAGVIHGWRNKI FT VPTDCSGFDWSVADWMLEDDMEVRNLLTIDNNELTRRLRACWLKCITNSVICTSGGVLY FT AQTHPGVQKSGSYNTSSSNSRIRVMAAFHCGADWAIAMGDDALESPNSNINAYQKLGFK FT VEVASQLEFCSHVFEQEDLARPLNVNKMLHRLIFGYNPACGNAEVLCNYLQAVASVLNE FT LRHDPQLVATLHEWLVPGAATK" FT CDS 176..2128 FT /gene="ORF1" FT /product="multifunctional protein" FT /db_xref="GOA:Q2L3J0" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q2L3J0" FT /protein_id="CAJ26251.1" FT /translation="MAPTLPFTTGWSXYALLLXLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWLDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRRDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFNNADISDIADYAEEVYEKALAEPKVWKPASGKYWWEMA FT EEEDDFVVEARSPPPDKPVENATAKEQTPASTVEKAMVADQLTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLXNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVISQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPKRQV" FT CDS 3582..5612 FT /transl_except=(pos:4170..4172,aa:OTHER) FT /gene="ORF5" FT /product="putative aphid transmission factor" FT /note="stop codon readthrough" FT /db_xref="GOA:Q2L3I9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q2L3I9" FT /protein_id="CAJ26252.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLPKAYHEYKITSL FT TIQYNSCSSDATPGAIALEGDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPKXVGDAPPTPTPTPTPPAPTPAPAPKY FT FGYQGVPNNIVKTRGNSEYLDVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFV FT LFPVDKGKYSVFIQCEGFKAVKAKGGTNDGKMSGFPCDNANLAGWRAYAYSGCTISNYR FT TSDSNVPGHPDMKVNGGSFTDQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVV FT SYANFTDKILEWGSISVAMDEVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPE FT QPTNEGTESMPPAPNPALGPDNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRE FT SPIYASPPPRLLVPTHADTLRQADKVRRALMANASRSASPPPMNTEVPXLGATDTASLS FT GSLRGGSLRGNLGSRPSLPRVADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLXALPX FT ATREQRREYERLKNSQGKTVAKAHAKEHGYKPPKSSSSLFG" FT CDS 3582..4172 FT /gene="ORF3" FT /product="capsid protein" FT /db_xref="GOA:Q2L3I8" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:Q2L3I8" FT /protein_id="CAJ26253.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLPKAYHEYKITSL FT TIQYNSCSSDATPGAIALEGDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3613..4065 FT /gene="ORF4" FT /product="putative movement protein p17" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q2L3I7" FT /protein_id="CAJ26254.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYPKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKGIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" XX SQ Sequence 5612 BP; 1502 A; 1464 C; 1350 G; 1287 T; 9 other; atgcttttca acgaattctc tgttgaggga attaaattca gagcacacga gagcacttca 60 cccgtctttc gtggggaggt ttccaggtgt ttgacctact acagagtctt cgcctgcaag 120 tgggttgagt taacctacca agatccactc acacgccatc tagtacaaga ttactatggc 180 cccaacactc ccgtttacaa ctggctggag cayatacgcc ttattgttgy yactatggtg 240 cctattctgc tcctgccaga cacaaccatt ggacggcaca tccatattaa gagacagtac 300 ctccagtctg tccttttatg gcttgcccgc aacaaactct actatagagt taagagatgc 360 cgttccaagc ggtttgtact cgagcaagat cacatcggcc ccgaactttt ccgaactcag 420 ctactccagt atgctgggtt ggatgttttt caagatgtgg ctcgattgca agactttctc 480 gagagaggct acgacacttt ccgatcggtt cttggagtac accttctcga acacgaaagg 540 tttgttagtc gaattcttga acaacctgtt atggaacctg atcaagctgt acgtttatgc 600 tttcactatc ataacacgct tgatcatgac gatgacgatt ctggcctgga aaccgatttt 660 gataatctgt ctcttggtcg tccttacatc aatggtctac cacctaatga gaaaattatt 720 ttcattcatt caaatttggt gggtcgtagc acctattctc atgatatata ggaccgtcac 780 gtacatccac agaaggttgt tcgcttcacg aagggacgag aaaatggtcc aaggtttcaa 840 aagctttgcc gtccccatgt caccaccagg acactcagtg cttgagatag tacaccccga 900 tgattctcac atgggatatg catcctgtgt tcgattgaaa aacggggaag aggctctcat 960 gacatccgtt cactgcataa gcgattcctt caaggttcgc tcgttcagga atggtatcaa 1020 gatccctcta acggaattcc aagtgctgtt gcccgccaat gcgatggaca ttgttcttct 1080 tcgaggccca cctgagtgga agtccatcct tggagccaaa gcagcccatt tcactccagt 1140 caaccagctc aacaaaggag ctgtgtcttt cttcattttc gacaaggagt ggatgatgca 1200 caacgcaaaa gtcacaggaa ctgatggttt ttatgccaca gttcttagta acactgagaa 1260 gggctacagt ggcgccccct actggaatgg gaaatctata gtaggggtgc ataaagggca 1320 cgtgtacgga gacgattcta agaattacaa tcttatgtcg ccgattcccc ctgtcaaggg 1380 gttgacggcg cctaattttg tgtatgagtc tccgtctctg caaggagatg tctttaacaa 1440 cgccgacatt tcagacattg ctgattacgc cgaggaggtg tatgagaaag cccttgcaga 1500 gcctaaagtg tggaaacctg ccagcggtaa gtactggtgg gaaatggctg aagaagagga 1560 tgattttgtc gttgaggcaa ggtcacctcc ccctgataaa cctgttgaga acgctacagc 1620 aaaagagcag actccagctt cgactgtcga gaaagctatg gttgctgatc agctgactcc 1680 agaccaggga aacgagccaa gtggcgccga ccacttaaaa acaccggaat ccaccccgct 1740 caagcaagac gaatctacaa aagagttgct carcaacatc gtctcgcagt tgattcaaaa 1800 gatcgacctg agctccattg caacgagggt ggaggagaaa ctgctgcgtc aggcccagaa 1860 caaacagcag cagaacggag ggaagaagtc gcccagaaaa cgcaagacct cgaacacttc 1920 ttccaagccg catacaaatg ggaagagtcc accagtgata tcccagggtt caggaaatgc 1980 ggcaaactcc ccgcgctata ccatccccca aaaccgaaga gcacacaatg gggagagcgc 2040 atcatctcag agcacccaga aatggcgtcc aaagtcgccg gtttcgggtg gccctccttc 2100 ggcgcccaag ccgaagagac aagtctgaga ctccaagcgg cacgctggct taaacgagct 2160 gagtcagcgg aaaagccgac agaaaaacaa cgcaagctcg tcattgatcg tgtggtcaag 2220 gcatatgaac cgtgtagaac caatgcccca cacaccagct cctctggcag cctcatctgg 2280 tccgacttct tgaaagattt caaggaggct gtcaactcac tagaactcga tgcaggaata 2340 ggtctcccat acaaacttct tcacaaagac actcatcgtc aaatggttga agaccccaaa 2400 ttcctgccgc tcctgacgcg attgacctgg aaccgtttac agaagatgtc ccaggttgac 2460 ttccaggaga tgactcctga acaactagtg agagaaggat tgtgcgatcc gattcgtttg 2520 ttcgtcaaag gagaaccgca caagcaggca aagcttgatg aagggcgcta ccgcctcatc 2580 atgtcagtct cgctggtaga tcaactggta gcccgggttt tgtttcaggc acaaaacaaa 2640 agagagatag ctttgtggag agctatccct tcaaagcccg gtttcggctt atccacagac 2700 agggaagcac gcgaattcat tgaatccctg tccaagacag tagggtgttc cccagcagga 2760 gtcattcatg gctggaggaa caagatcgta cccaccgact gttccggttt tgactggtca 2820 gtcgccgact ggatgctcga agacgacatg gaagtgagaa atcttctcac aatcgacaac 2880 aacgagctaa cccgccgcct tagggcgtgc tggttgaagt gcatcacaaa ctctgtgatt 2940 tgcacatccg gcggtgtctt gtacgcccaa actcatcctg gagtgcaaaa atctggatct 3000 tacaacacga gttcatccaa ttccaggatt cgagtgatgg ccgcttttca ttgcggcgca 3060 gattgggcga tagccatggg agacgatgca cttgagtctc caaactccaa catcaacgcg 3120 tatcaaaagt tggggttcaa agtcgaggtt gcctcacagc tagaattttg ctcacacgtc 3180 tttgagcagg aggacctcgc caggccgttg aacgtaaaca aaatgcttca tcgtttgatc 3240 tttggataca atccggcctg tggcaacgcg gaggtattgt gtaattacct ccaagctgtg 3300 gcttctgttc tcaacgagct tcgccatgat ccacagctag ttgctaccct ccatgagtgg 3360 ctggtccctg gcgccgccac aaaataaata cggagggaca tcccgagcca ccatataggt 3420 tgcaagagtg gaacgggaag tcctatagat aagccgcgcg attctggatt acaaacttct 3480 agcgggagtt ctcatcggtg ttctcatcgc aatcccccta gtgatcatag cggcttacct 3540 gatattcctc aaaatcagtg cacacatccg agcgatagtg aatgaatacg ggcgctaacc 3600 gctcacgaag gaatgtcaga agacgcgcta accgtcgtag acagactcgg ccagtggtcg 3660 tggtccgggc tcccccagga cctagacgag tacgacgacg tagagcacgt gttggaggaa 3720 acgctgtgcg aggaccggga ggaagaagca accgggatgt tctcactttc acggttgacg 3780 atctcaaagc caactcaacc gggatcctca aattcggacc gaacttatct cagtacgcag 3840 cgttcaacaa tggcttaccc aaagcctacc atgagtataa aatcacaagt ctcactattc 3900 agtataactc atgctcctcc gacgcaactc caggtgcaat cgcacttgaa ggggatacat 3960 cctgctccca aacaacaaca ggctccaaga ttactagctt ccccgtcaag aggaacgcca 4020 agaaagtctt cccggccccc ttcatcaggg ggaaagattt catgactacg tcagctgacc 4080 aattttggtt gctgtacaaa gggaatggag actcgagcct agcaggacaa ttcgtctgcc 4140 gatttgaatg ccttttccag aatcccaaat aggtaggcga cgctccccca acacccaccc 4200 caacaccaac cccacccgct ccgaccccgg caccggctcc caagtatttt ggataccaag 4260 gagtgccgaa caacatcgtg aaaacaagag gaaactctga atatctagat gtgggtccgc 4320 tcgaaaatgt gaccatgtat ctttggaaag acgaatcgtg gagcattgag caactgtcag 4380 ccggatatcg cgttaacaat cgagaacgtg ccataccctt tgtcctcttt ccagtggata 4440 aaggcaaata ctccgtgttt atacaatgtg agggctttaa ggcagttaaa gccaaaggag 4500 gcacgaacga cggcaagatg agcgggtttc cttgtgacaa tgcaaatctc gcgggttggc 4560 gagcatacgc atatagtggg tgtacaatct ctaattatag gacatcggac tctaatgttc 4620 ctggtcatcc ggacatgaaa gtcaatggtg gatcttttac cgaccaattg gtcgagagag 4680 atttttcttg ttcatttcac cttgaggtgc ctcaacaagg ctattttggc ctagaggccc 4740 cacccattga aaagagtgat catttcaatt ttgtggtgtc ttacgctaac ttcactgata 4800 aaatcctgga atggggttca atctccgtag cgatggacga ggtaaatgac ggagcgtata 4860 gtagatcaaa atgggataag actactgcaa tgagtgctcg tttgccgact caggtgagcg 4920 ccccctctga ggtttacacc ccggaagcac ctgagcaacc gactaacgaa gggacggaga 4980 gtatgcctcc agccccgaac ccggcactgg gaccggacaa cccagcaacc aaagaaccca 5040 cgcccaaaat cgtggataat ccggatccaa aggtactcaa ctggctcaac aaccagcgag 5100 ataaacctgt ggtggaagag gttttgcgtg aatctccgat ttatgcttct ccaccccccc 5160 gtctcctagt tccgactcat gccgacactt taagacaggc ggataaggtc cggagagctc 5220 tcatggctaa cgcttcacgt tcagcctcac ctccccccat gaataccgaa gttcctrttc 5280 ttggggccac tgacactgct tctctaagtg gatcattacg cggtggctcc ctcagaggta 5340 atttgggttc tcgcccctct cttccgaggg tcgccgacag ccctccccgt tctgtaagtc 5400 cggctcgttc ygagaccagc actttacagg gcggttctct gagcggtggt tctttgagag 5460 gwggcaacct tcrggctttg cccraggcca caagagagca aaggagggaa tatgaacgtc 5520 tcaagaattc acaagggaag acggtagcaa aagcccatgc taaagaacac ggttacaagc 5580 caccgaaatc ttcctcctcc ttgtttggtt ga 5612 //