ID AM055720; SV 1; linear; genomic RNA; STD; VRL; 6227 BP. XX AC AM055720; XX DT 29-JUL-2005 (Rel. 84, Created) DT 19-JUL-2007 (Rel. 92, Last updated, Version 3) XX DE Cymbidium mosaic virus complete viral genome, isolate plm1, genomic RNA XX KW coat protein; complete genome; cp gene; movement protein 1; KW movement protein 2; movement protein 3; mp1 gene; mp2 gene; mp3 gene; KW RdRp gene; RNA dependent RNA polymerase. XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6227 RA Sherpa A.R.; RT ; RL Submitted (28-JUL-2005) to the INSDC. RL Sherpa A.R., Floriculture Division, Inst of Himalayan Bioresource RL Technology, Plant virus Lab, Floriculture Division, IHBT, Palampur, H.P. RL India, Himachal Pradesh, 176061, India, INDIA. XX RN [2] RA Sherpa A.R., Hallan V., Pathak P., Zaidi A.A.; RT "Complete nucleotide sequence analysis of Cymbidium mosaic virus Indian RT isolate: further evidence for natural recombination amongst potexviruses"; RL J. Biosci. 32:663-669(2007). XX DR MD5; 7279aafc7213df47fca7c0ad0c49a99a. XX FH Key Location/Qualifiers FH FT source 1..6227 FT /organism="Cymbidium mosaic virus" FT /host="Phaius tankervilliae" FT /isolate="plm1" FT /mol_type="genomic RNA" FT /country="India:Palampur" FT /db_xref="taxon:12178" FT CDS 74..4327 FT /gene="RdRp" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:Q5ZER0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5ZER0" FT /protein_id="CAJ20049.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDGILSSNIFQHFTIPIKNKIRELVQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSSEAEGSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDNPSTSTAPAVIFTA FT GINSSASTNIIFGSFTPEAEAPPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVQDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNCRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPWAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSAAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKLFLDNYREEQTERLTSTG FT PEPEVREPAAPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQI FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGNWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIYEVLNVDEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDVEDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4333..5022 FT /gene="mp1" FT /product="movement protein 1" FT /db_xref="GOA:Q4A1I3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q4A1I3" FT /protein_id="CAJ20050.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRHCVVLRPLSSLHGSHPRQGQPHH FT FRFLCQV" FT CDS 5010..5348 FT /gene="mp2" FT /product="movement protein 2" FT /db_xref="GOA:Q76SQ1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q76SQ1" FT /protein_id="CAJ20051.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT CDS 5203..5478 FT /gene="mp3" FT /product="movement protein 3" FT /db_xref="GOA:Q6KCH5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q6KCH5" FT /protein_id="CAJ20052.1" FT /translation="MLGTRNILTTSGLPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWRGLSYHNNLK" FT CDS 5481..6152 FT /gene="cp" FT /product="coat protein" FT /db_xref="GOA:Q4A1I0" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q4A1I0" FT /protein_id="CAJ20053.1" FT /translation="MGESTPAPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGFPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQHRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHAESTNTLYSLPAPPT FT E" XX SQ Sequence 6227 BP; 1655 A; 1801 C; 1225 G; 1546 T; 0 other; ggaaaaccaa acctcacgtc tactccgcta tccgagcgaa atagcagccc cagcataggc 60 aatatcgcgc tccatggccc gagtacgtga cacccttgac aggctccgtg atccgtcggt 120 ccttacctca attaacgagg aagcccaccg acatatccgc cctgtccttg cctcggcact 180 cgtaaactgc ccttacgcgt tgaccgagga agaggccgac tgtctcgaaa atcttggcgt 240 gacagtcaat cccttcgcca tccaaacgca tacacatgct gcagctaaaa ctgttgaaaa 300 tcgaatgttg gaaattgttg gcacccacct tcctaaagaa ccctccacct tcatattcct 360 taagcggagc aagcttcgat acctacgacg cgccgccaac aacaaagaca tatttcaaaa 420 ccaacacatt gagcctaaag acttattgcg ttacgatgac gagtcttgtg aagtaatgcc 480 agagtgctcc acaagcacag cctacatcag cgatgctctc catttcttga gctacgctca 540 gcttgggaaa atattccagg attctcccaa gctgaaaatt ctgctggcaa ccctggtcct 600 ccccgtggaa gccctccata ggcacccatc tctttaccct gccatctata ctttgaacta 660 ccataaagat ggctttgaat atatacccgg caatcacgcc ggaggtgcct acttccacga 720 gtactccact ctgcagtggt tgactctcgg gaaattaatt atcaacgatc ctttgaaagt 780 aaagaaaccc cttactctta ctgtacagct aatagaaagt ctaggggcta accatctttt 840 acttatcacc cgaggggatc ttcgcacacc caaactgcgg acattcgcta aagataccca 900 tgttctactg ccacaaatat tccatcctaa gggtatgaat gcgaataaac cattgtccaa 960 acgtagagct atgcagttgt ggctctacgc caaatctgtt aaagaggtga gcgaacggga 1020 tctttatgct aaggtgaggc aattgatccc gacttctgag ttagaccttt tcgaccctgt 1080 ggaggtgacc cacttggtca attacttact attcatcagt cacctttcct ccgtatcttc 1140 gtatgacggc atcttgtcgt ctaatatatt ccaacatttc accattccaa tcaagaacaa 1200 gatacgggaa ttggtccagc tattcaccgg agcggaccaa tttaatcaac tgctcaaagc 1260 tctcgactgg caaacatttt cgtactctat gccagtagag accatccata cacgtgcggc 1320 caattatcaa gtcgctaaaa cgcttcgcat gtgcagagac ctaccatgcg atgaatatga 1380 tcgtgtaaag gatgtcctca gacagctccc tgacggagtg acgttgtttg aggaaaacga 1440 caagcaagat ccctcaagct ctgaagccga gggctctgag gatgacactg actccgtcga 1500 tttcaacctt ccccccactc atgacttgcc cccaaacttt gatcctctag acaagggcaa 1560 gtccattatc gttgacactg acaacccctc aacttctacg gcacctgccg tcatttttac 1620 tgccggtatc aactcctcag cctccacaaa tattatattt ggaagcttca cacctgaggc 1680 tgaggccccc ccccctcctc ccatggaaaa gttaccatgg gatctttgga ttcccctact 1740 ggaacaacat ggctttaaag gaaagagcaa gctgtacaag cccacgggtg aactaatctg 1800 ccccataact gaaatcaaaa cagttcccca ctgccccttt cccgataaag tccaggatgg 1860 ctgtgtgctt gcgcttaaat ctattaagcg tttcgccaca aaaatgacta tgctcagttc 1920 tcgagcttct gcctacactt ctgacattaa gaattgtagg actgggaaac tcctacccgc 1980 catgaacatg ccctggaaag cctctctcgc ctatgtcact caacatggtg acagagaaat 2040 tcctggcgtc gtgatccatg gtgccggtgg ctgtggcaaa tcttatgcta tccaaaaatg 2100 gttgagaagc tgctctgatc cttgggcagc tactgtggta tgcccaactc tagaactacg 2160 taatgactgg ctcaataaga tcggaagcta cgaacaaacg aatatcaaaa ctttcgagaa 2220 agctttaatt cagccagtca acaacgtagt tatctttgat gactacacca agctaccccc 2280 tgggtacatc gagaccatgg tgtaccatca ccacaacctc gacctaatca tattaactgg 2340 ggatcctatg cagagtgcct accatgaaac taacagggat gcctatatct ctttaatacc 2400 tgatgcctct gccatcttta gtgagtactg tgagttcaac atcaacgcca cccaccgtaa 2460 tgtggctgaa ctcgcttgcc tcctcggcgt ctattccgaa cgccaaggca aactcactgt 2520 ttccttcagc gcagccccac tttctaaagg taaggtaccc attctggtac cctctagaat 2580 gaagcaagag gcttttgctg atgtcggcaa ccgttgcatg acttatgccg gttgccaggg 2640 tctcactgcc cctaaaatcc aaattctgat agacaaccac actacgttct gctctgaaca 2700 aacattatac acttgtctat cacgagctgt ggaccaaatc cacttcatta acactggtcc 2760 caactcgcag gctttctgga ccaaattgga atcaacgccg tacctaaagc ttttcctcga 2820 taattaccgt gaggaacaaa ctgaacggtt aacatctacc ggcccggagc ctgaagtccg 2880 tgagccagca gccccaaaaa cgcatattcc tgtcgaaaat acatctggct tacgcatttc 2940 tgcacttgac ctgccggaaa agcactctcg cgagattttt aacaaggcgc atggcttttc 3000 caatgctatt cagggagatg gcgtagctcc catgttccag catcaacagg caaaggacga 3060 aacccttttc aaggccacca tagacgctag actctctata acacatcctg atgaaaataa 3120 aagagagttt gccatgaaga aagacactgg ggacgtcctt tttgtcaatt acaaagctat 3180 aatgaatcta cctcatgagc ctgtcccttt tgaacctcgt ctctggaaca tctgcaaagc 3240 tgaagtgcag aacacatacc tagccaaacc cattgcaaat cttatcaatg gtaccttaag 3300 gcaatcacct gattttccag ccaataaaat agccttattc ctgaaatcgc aatgggtaaa 3360 gaaaattgag aaaattggag ccataccagt taaacctgga cagactattg catcatttat 3420 gcaagagact gttatgctgt acggcaccat ggcacgctac ctccgtaaga tgcggcaaag 3480 atatcaaccc gcacatatat ttatcaattg tgaaaagact ccggaggact tcaataaatt 3540 catacttgaa cactggtcac acaagcaaat tgcccacact aacgatttta ctgcttttga 3600 ccagtcacaa gatgctgcca tgctccaatt tgaagttatc aaagctaggt acttcaatat 3660 ccccgaggat gttatagaag gatacattca aattaagctc actgctgaaa tcttcctcgg 3720 gacactttcc atcatgcgcc tatctggtga agggccaacc ttcgacgcca atactgaatg 3780 ctctattgcc tacaacgcca ccagatacca tattaatgaa gacgtcaccc aagtatacgc 3840 cggtgacgac atggctatgg accatgtgtg ccctgaaaag aagagcttca aagctttgga 3900 aaagaaattg aaattgacct caaaacctct ctatccaaag caaaaacctg gaaactgggc 3960 cgatttttgc ggctggacta taacgcctta tggcatcatt aagaatccta agaaacttga 4020 cgcatgccta caattgcaca cccaactggg cgatgccgat aaagtcgcta ggtcatacgc 4080 actggatgcc aaatatgctt atgatctggg cgatcgcatt tatgaggttc tgaatgttga 4140 tgaaatgacc agccacttta acgttataag acagttgcac aaactgcatc aacaagatgt 4200 gctagtccca cccgagacta ccgtagccac agcggtaaag tctcaacctg acgtggagga 4260 cctgtggctc cgtgcgctta gcttccctga ctggacggac cgcgcccaac ttttaaaacg 4320 gggttaattc tgatggagct agcgtactta gttagattac tagagcacaa taaattcgag 4380 cgcaccaatc tgcccctttc ctcaccctta gtcgtacacg gaatcgctgg cagtggaaaa 4440 tccaccatcc tcacaacttt ccatcaccat tacccggctc accctatctt ctcacacagt 4500 cccacattgc ttgaccctag caaccgcata taccaacagt gcatcactac tgactcggtg 4560 ccagacggtg ctatcgtaga cgagtacaat tacaaagcac tcgactactc tcgctgtcta 4620 gccctcttcg gtgatccact ccagcttcca cattcacttc aaccccacta ctactctagc 4680 cgcacccacc gctacggtcc caagctcacc agcctactca acgacctctt ccacctttct 4740 atcacttctc ttgcccccgt cgacagcctt gattacgctg atccttttgc tgtcgacccc 4800 tctggattca ccattgctga cgaggaagtg tacaacttcg tctctcaaca ggttcccggc 4860 accttgctgc cgctcgatac tgtaggttta gaatattcta gtgttagttt ttactgcagt 4920 gatctccgac actgtgtcgt actaaggcca ctcagcagcc ttcatggttc tcacccgcgg 4980 caagggcaac ctcaccattt tcggtttcta tgccaggttt agttccacca cctgaccact 5040 ccaagtcact cttcgtcctt gctattggta taactgtggt ctctgcatta tttgtgctaa 5100 agtcccacac ttttccaatc gcaggcgata atattcaccg cttcccctcc ggcggccaat 5160 ataaagacgg tactaagcag ataaactact gtccacctac tcatgctagg tacccgaaat 5220 atcctgacta caagtggctt gccgctaccg ccgccatcgt catccctctc tgcctatata 5280 tttcctacca tcctggcaat aatattcgcc gtatttgccc ttgttgcaat acatatcacc 5340 acccctgagc ccttctgtac catacacata gacggggcgt ctattactat cactaactgc 5400 cccgatcctg cagctatatt agataaagta gccataggcc cctggcgagg gttaagttac 5460 cacaataatt tgaaataatc atgggagagt ccactccagc tccagctgcc acttactccg 5520 ctgccgaccc cacttctgca cccaagttgg ctgacctggc tgccattaag tactcacctg 5580 tcacctcctc catcgccacc cccgaagaaa tcaaggccat aacccaattg tgggttaaca 5640 atcttggctt ccccgccgac acagtaggta ccgcggccat tgatctggct cgcgcctacg 5700 ctgacgtcgg ggcgtccaag agtgctaccc tgctcggttt ctgccctacg aaacctgatg 5760 tccgtcgcgc cgctcttgcc gcgcagatct tcgtggccaa cgtcaccccc cgccagtttt 5820 gcgcttacta cgcaaaagtg gtgtggaatc tgatgctggc tactaacgat ccgcccgcca 5880 actgggccaa ggctggtttc caggaggata cccggtttgc cgcctttgac ttcttcgatg 5940 ccgtcgattc cactgccgcg ctggagcctg ctgaatggca gcaccgccct actgaccgtg 6000 aacgtgctgc gcactcgatc gggaagtacg gcgcccttgc ccgtcagcgt atccaaaacg 6060 gcaacctcat caccaacatt gccgaggtca ccaagggcca tgctgaatcc accaacactc 6120 tctattctct gcctgcaccc cctactgaat aacgccaaac ttaataaggc gtgtggtttt 6180 ctaaagtttg tttccactac tggcataata tgtttagcca gattaat 6227 //