ID   AJ969095; SV 1; linear; genomic RNA; STD; VRL; 1689 BP.
XX
AC   AJ969095;
XX
DT   05-MAY-2005 (Rel. 83, Created)
DT   05-MAY-2005 (Rel. 83, Last updated, Version 1)
XX
DE   Prunus necrotic ringspot virus MP gene for movement protein and CP gene for
DE   coat protein, genomic RNA
XX
KW   coat protein; CP gene; movement protein; MP gene.
XX
OS   Prunus necrotic ringspot virus
OC   Viruses; Riboviria; Bromoviridae; Ilarvirus.
XX
RN   [1]
RP   1-1689
RA   Kulshrestha S.;
RT   ;
RL   Submitted (04-MAY-2005) to the INSDC.
RL   Kulshrestha S., Floriculture Division, Institute of Himalayan Bioresource
RL   Tech., P.O.Box 6 Palampur, Himachal Pradesh - 176061, INDIA.
XX
RN   [2]
RA   Kulshrestha S., Hallan V., Raikhy G., Verma R.R., Haq Q.M.R., Zaidi A.A.;
RT   "Molecular characterization of rose isolate of Prunus necrotic ringspot
RT   virus (PNRSV) form India";
RL   Unpublished.
XX
DR   MD5; b1f1822a52e40b0ffe3a3480184079f6.
DR   EuropePMC; PMC3784900; 24426281.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1689
FT                   /organism="Prunus necrotic ringspot virus"
FT                   /mol_type="genomic RNA"
FT                   /country="India:North Himalayan region"
FT                   /isolation_source="Rose"
FT                   /db_xref="taxon:37733"
FT   primer_bind     1..23
FT                   /note="PCR 5' primer"
FT   CDS             23..874
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="GOA:Q6ZXV4"
FT                   /db_xref="InterPro:IPR002538"
FT                   /db_xref="UniProtKB/TrEMBL:Q6ZXV4"
FT                   /protein_id="CAI93796.1"
FT                   /translation="MAGVSKNPSTSDFSVVECSMDEMSQISEDLHKLMLSDEMKALPTK
FT                   GCHILHLVNLPKSNILRLASKEQKGFLSRQADKVKKKIYRCVGRVFLVYVPIIQATTSG
FT                   LITLKLQNSDTGEISDVVTDVEANRAFVIMDRWGRSLVESADLNLLYSISCPDVRPGAR
FT                   VGEMMVFWDERMSRQQTYLEKGNPILFPIAETKPSKYLNDKKVLMSMVRSRILAGTEGC
FT                   DIAPENIEVKRLGDNRKVLTIQPKTPIIEEIKDDVEPLGSNGENHMEEKTVTVKVGSSG
FT                   SA"
FT   CDS             949..1629
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q705K7"
FT                   /db_xref="InterPro:IPR002681"
FT                   /db_xref="UniProtKB/TrEMBL:Q705K7"
FT                   /protein_id="CAI93797.1"
FT                   /translation="MVCRICNHTHAGGCRSCKKCHPNDALVPLRAQQRVANNPNRNRNP
FT                   NRVSSGMGPAVRPQPVVKTTWTVRGPNVPPRIPKGYVAHNHREVMTTEAVKYLSIDFTT
FT                   TLPQLMGQNLTLLTVIVRMNSMSSNGWIGMVEDYKVDQPDGPNALSRKGFLKDQPRGWQ
FT                   FEPPSDLDFDTFARTHRVVIEFKTEVPAGAKVLVRDLYVVVSDLPRVQIPTDVLLVDED
FT                   LLEI"
FT   primer_bind     complement(1665..1689)
FT                   /note="PCR 3' primer"
XX
SQ   Sequence 1689 BP; 456 A; 340 C; 451 G; 442 T; 0 other;
     gttggttgaa tagtgtttca gtatggccgg tgtcagtaaa aacccctcca ctagtgattt        60
     ttcagtagtg gagtgttcta tggacgaaat gagccagata tcagaggatt tgcacaaact       120
     tatgctgtcc gatgagatga aggcgttacc aacgaaaggt tgtcacatcc tgcatttggt       180
     taacctcccg aaatccaata tactgagatt agcgagtaag gagcagaaag gtttcctctc       240
     gcgacaggcc gataaagtaa agaaaaaaat ttacagatgt gtaggccgag tattccttgt       300
     ttatgtaccg atcattcagg caacgacttc gggtctgata acccttaagt tgcaaaactc       360
     cgatacagga gagatttcag acgtcgtgac agacgtcgaa gccaaccgcg cctttgttat       420
     tatggacaga tggggaagat ccctggtgga atcggcagat ttaaatctgt tgtattccat       480
     ttcatgtcca gacgtccgac ctggagccag agtgggagag atgatggttt tttgggacga       540
     gaggatgtca aggcagcaga cttacttgga gaaagggaat cctattttat tcccgattgc       600
     cgagacaaaa ccttcgaaat atcttaatga taagaaggtg ttgatgtcta tggtccgaag       660
     tagaatattg gcaggtacag aagggtgcga tatagctccc gagaacatag aggtcaaacg       720
     attaggggat aataggaagg ttttgactat tcaaccgaaa accccgatca tagaggaaat       780
     taaggacgat gttgaaccgt taggttcgaa tggtgaaaat catatggaag agaagactgt       840
     gaccgttaag gtcggtagtt ccggaagtgc ttgagtgact atgtcacgag cgtgcgcttt       900
     gcgcgagcgt ttttctttct ttcttccgaa tatctctttc atttgataat ggtttgccga       960
     atttgcaatc atacccacgc tggtggatgc cgttcttgca agaagtgcca tccgaatgat      1020
     gctctggtcc cactcagggc tcaacaaagg gttgcgaata acccgaatag gaataggaac      1080
     ccgaataggg tttcgagcgg tatgggacct gcggtccgac cgcaaccggt cgtgaagacc      1140
     acttggaccg tgaggggtcc gaatgtgcct ccccgaattc ctaagggtta tgtagcacat      1200
     aatcaccgag aggtgatgac aacagaggca gtgaagtact tgagtattga cttcacgacc      1260
     actctccctc agttgatggg tcagaatttg accttattaa ctgttatagt ccgaatgaac      1320
     tctatgagtt cgaatggttg gattgggatg gtggaggact ataaggtgga tcaacctgat      1380
     ggtccgaatg ctctgtctag gaaggggttc ttgaaggacc aaccgagagg ttggcagttc      1440
     gaacctccct ccgatttaga tttcgacact tttgcgcgta cgcatcgtgt cgtcatcgaa      1500
     ttcaagaccg aagtgcccgc tggggccaag gtcttggtca gggatttgta cgtagtggta      1560
     agtgacttac cacgagtgca aattccgact gatgtcttgc tggtcgatga ggacctgctt      1620
     gagatctaga gtgagataag cacactcgaa tttctccgaa tggaaagttc gcacactcga      1680
     atttctccg                                                              1689
//