ID   AJ890228; SV 1; circular; genomic DNA; STD; VRL; 2755 BP.
XX
AC   AJ890228;
XX
DT   19-MAR-2005 (Rel. 83, Created)
DT   23-JUL-2008 (Rel. 96, Last updated, Version 6)
XX
DE   Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene and
DE   av1 gene, isolate Tamil Nadu 6, complete virus segment
XX
KW   ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; av1 gene;
KW   coat protein; replication enhancer; replication-associated protein;
KW   transcription activator protein.
XX
OS   Sri Lankan cassava mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2755
RA   Jeske H.;
RT   ;
RL   Submitted (09-MAR-2005) to the INSDC.
RL   Jeske H., Molecular biology and virology of plants, University of
RL   Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY.
XX
RN   [2]
RX   DOI; 10.1007/s00705-005-0624-8.
RX   PUBMED; 16132175.
RA   Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.;
RT   "Biodiversity and recombination of cassava-infecting begomoviruses from
RT   southern India";
RL   Arch. Virol. 151(1):55-69(2006).
XX
DR   MD5; 8b0c86a34df034b237477f443a2da169.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2755
FT                   /organism="Sri Lankan cassava mosaic virus"
FT                   /segment="DNA A-like"
FT                   /isolate="Tamil Nadu 6"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Tamil Nadu, Olipatti"
FT                   /isolation_source="Manihot esculenta cv. White Rose"
FT                   /db_xref="taxon:161378"
FT   CDS             294..1064
FT                   /gene="av1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q5CAM2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CAM2"
FT                   /protein_id="CAI64616.1"
FT                   /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT
FT                   NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR
FT                   VGKRFCVKSVYILGKIWMDENIKTKNHTNSAMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT                   STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH
FT                   TEDALMLYMACTHASNPVFTTLKIRIYFYDSVSN"
FT   CDS             complement(1061..1465)
FT                   /gene="ac3"
FT                   /product="replication enhancer"
FT                   /db_xref="GOA:Q5CAM1"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CAM1"
FT                   /protein_id="CAI64617.1"
FT                   /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSGPFNRPWDI
FT                   ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQIWRFLRVFKTQVLKYLDRLGIICINT
FT                   VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY"
FT   CDS             complement(1206..1613)
FT                   /gene="ac2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:Q5CAM0"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CAM0"
FT                   /protein_id="CAI64618.1"
FT                   /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWGLYLGGSKSPLFQDHPARQRAVQQAVGHNNHPDTLQPQ
FT                   PEESVGTTSMLDGFQGLDDLTASDLAFLEGI"
FT   CDS             complement(1543..2598)
FT                   /gene="ac1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:Q5CAL9"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CAL9"
FT                   /protein_id="CAI64619.1"
FT                   /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI
FT                   CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID
FT                   KDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN
FT                   LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS
FT                   RTGKTIWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ
FT                   SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY
FT                   SGSNQGPTQGS"
FT   CDS             complement(2142..2444)
FT                   /gene="ac4"
FT                   /product="AC4 protein"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:Q5CAL8"
FT                   /protein_id="CAI64620.1"
FT                   /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAAAPVSTPTYRALSPA
FT                   QTSSPTSTRMETPSNGVSFRSMEDLQEGDSSQQTTLTPQHLTQAVSQRLLESLRS"
XX
SQ   Sequence 2755 BP; 691 A; 614 C; 653 G; 797 T; 0 other;
     accggatggc cgcgcccccc gctttgtggt ggaccccccc cacgtggaga tgtcccccac        60
     tcagaacgct ccctcaaagc ctgtttagtt gtggtccctc tttaagtact tgctcagcaa       120
     gttgtaatct gcacaatgtg ggaccctttg gtaaacgagt tccctgaatc agttcacggt       180
     ttccggtgta tgcttgccgt gaaatatctt cagctagttg aaggtactta ttcccccgat       240
     acactcggtt acgatttaat cagagatttg atctctgtca tcagggcaaa attatgtcga       300
     agcgaccagc agatatcatc atttcaactc ccgcctcgaa ggttcgtcgc cgtctgaact       360
     tcgacagccc atacagcagt cgtgctgctg tccccactgt ccgcgtcaca aaaagacaag       420
     cctggacaaa caggcccatg aatcggaagc ccaggtggta caggatgttc aaaagcccag       480
     atgttcctag gggatgtgaa ggcccatgta aggttcaatc gtttgagtcc agacacgatg       540
     tggtccatat aggtaaggtc atgtgcatct ctgatgtcac tcgtggagtt gggcttactc       600
     atcgcgtggg taagaggttt tgcgttaagt ccgtttatat cctgggtaag atatggatgg       660
     atgaaaatat taagaccaag aatcatacga atagtgcgat gttcttcctt gtaagggatc       720
     gtaggcctgt agataagccc caggattttg gtgaagtgtt taatatgttc gataatgaac       780
     ctagtacagc tacggtgaag aacatgcatc gtgatcgtta tcaagtcctc aggaagtgga       840
     gtgccactgt cactggtggt cagtatgcga gcaaggaaca ggctttagtt aggcgttttt       900
     ttagagttaa taattatgtt gtgtataacc agcaagaggc tggcaagtat gaaaatcata       960
     ccgaggatgc attgatgctg tacatggcgt gtactcatgc ctctaaccct gtattcacta      1020
     cgctgaagat tagaatctac ttctacgatt cggtcagcaa ttaataaaca ttaaatttta      1080
     ttaaattaga ctgctcaata ctgtcagtcc cagcgattac attatataat acatgttcta      1140
     ctgcgtttac aaccgtatta atacatataa tccctaatct atcgaggtat tttaatactt      1200
     gggtcttaaa taccctcaag aaacgccaga tctgaggctg taaggtcgtc cagaccttga      1260
     aatccatcca gcattgatgt agtcccaacg ctttcctcag gttgtggttg aagcgtatct      1320
     ggatggttat tatgtcccac ggcctgttga acggcccgct gtcgtgctgg atgatcctga      1380
     aatagagggg atttggaacc tcccagatat agaccccatt catcgcctga gctgcagtga      1440
     tgagttcccc tgtgcgtgaa tccatggttg tggcagttga tgtgcacgta gtatgagcag      1500
     ccgcaattga ggtctactct ccgtcgccga atggccttac gcttagctgc cctgtgttgg      1560
     accttgattg gaacctgagt agagcggctc gctgagggag atgaaggtcg cattcttcag      1620
     agcccaagcc ttcaatgcgc tattcttcgc ctcgtcaagg aattctttat agctggaatt      1680
     gggcccagga ttgcagagga agatagtggg aattccccct ttaatttgaa ctggcttccc      1740
     gtacttggtg tttgactgcc agtctctttg ggcccccatg aattccttaa agtgctttag      1800
     atagtgcgga tctacgtcat caattacgtt gtaccatgca tcattgctgt aaaccctagg      1860
     actcaagtcc agatgtccac acagataatt gtgtggacct aatgacctag cccatattgt      1920
     tttgcctgta cgactatcgc cctcgatgac tatactgtta ggtctcaaag gcctcgcaga      1980
     ggcacccatg acgttctctg acacccactc ctcaagttca tctggaactt ggtcaaatga      2040
     agaggctgag aagggagaca catatacctc gggaggaggt gtaaaaatcc tatctaaatt      2100
     agcatttaga ttatgaaatt gtaaaacata atccttgggt gctaactcct taatgactct      2160
     aagagcctct ggcttactgc ctgtgttaag tgctgcggcg taagcgtcgt ttgctgactg      2220
     ctgtccccct cttgcagatc ttccatcgat ctgaaactca ccccattcga tggtgtctcc      2280
     atccttgtcg atgtaggact tgacgtctga gctggactta gcgctctgta tgttggggtg      2340
     gaaactggtg ctgctgcttg ggtgtacaca atcgaattgc cgattgtttg tgattgtgag      2400
     cttcccttcg aactgaagca gagcatggag gtgaggttcc ccattctgat ggagttctct      2460
     gcaaatttta ataaatttga tgtttgtcgg aagactcaag cttcggaaga actcgagtaa      2520
     gtgttctttg gtgagagaac acttagggta tgtgaggaat atatttttgg actgaattct      2580
     gaatcgtggg tttctcatct ttgactcggt caattggaga cactcctgag caagtctcta      2640
     gtgaattgga gacaatatat atgtgtctcc aaatggcatt cttgtaattc tcaaaaggta      2700
     cagtcaaatt tcaaattcga atttcagatc caaaaagcgc catccgtata atatt           2755
//