Dbfetch
ID AJ890228; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC AJ890228; XX DT 19-MAR-2005 (Rel. 83, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene and DE av1 gene, isolate Tamil Nadu 6, complete virus segment XX KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; av1 gene; KW coat protein; replication enhancer; replication-associated protein; KW transcription activator protein. XX OS Sri Lankan cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Jeske H.; RT ; RL Submitted (09-MAR-2005) to the INSDC. RL Jeske H., Molecular biology and virology of plants, University of RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY. XX RN [2] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX DR MD5; 8b0c86a34df034b237477f443a2da169. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Sri Lankan cassava mosaic virus" FT /segment="DNA A-like" FT /isolate="Tamil Nadu 6" FT /mol_type="genomic DNA" FT /country="India:Tamil Nadu, Olipatti" FT /isolation_source="Manihot esculenta cv. White Rose" FT /db_xref="taxon:161378" FT CDS 294..1064 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:Q5CAM2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5CAM2" FT /protein_id="CAI64616.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSAMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TEDALMLYMACTHASNPVFTTLKIRIYFYDSVSN" FT CDS complement(1061..1465) FT /gene="ac3" FT /product="replication enhancer" FT /db_xref="GOA:Q5CAM1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5CAM1" FT /protein_id="CAI64617.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSGPFNRPWDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQIWRFLRVFKTQVLKYLDRLGIICINT FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY" FT CDS complement(1206..1613) FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:Q5CAM0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5CAM0" FT /protein_id="CAI64618.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWGLYLGGSKSPLFQDHPARQRAVQQAVGHNNHPDTLQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1543..2598) FT /gene="ac1" FT /product="replication-associated protein" FT /db_xref="GOA:Q5CAL9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5CAL9" FT /protein_id="CAI64619.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTIWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY FT SGSNQGPTQGS" FT CDS complement(2142..2444) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5CAL8" FT /protein_id="CAI64620.1" FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAAAPVSTPTYRALSPA FT QTSSPTSTRMETPSNGVSFRSMEDLQEGDSSQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2755 BP; 691 A; 614 C; 653 G; 797 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggaccccccc cacgtggaga tgtcccccac 60 tcagaacgct ccctcaaagc ctgtttagtt gtggtccctc tttaagtact tgctcagcaa 120 gttgtaatct gcacaatgtg ggaccctttg gtaaacgagt tccctgaatc agttcacggt 180 ttccggtgta tgcttgccgt gaaatatctt cagctagttg aaggtactta ttcccccgat 240 acactcggtt acgatttaat cagagatttg atctctgtca tcagggcaaa attatgtcga 300 agcgaccagc agatatcatc atttcaactc ccgcctcgaa ggttcgtcgc cgtctgaact 360 tcgacagccc atacagcagt cgtgctgctg tccccactgt ccgcgtcaca aaaagacaag 420 cctggacaaa caggcccatg aatcggaagc ccaggtggta caggatgttc aaaagcccag 480 atgttcctag gggatgtgaa ggcccatgta aggttcaatc gtttgagtcc agacacgatg 540 tggtccatat aggtaaggtc atgtgcatct ctgatgtcac tcgtggagtt gggcttactc 600 atcgcgtggg taagaggttt tgcgttaagt ccgtttatat cctgggtaag atatggatgg 660 atgaaaatat taagaccaag aatcatacga atagtgcgat gttcttcctt gtaagggatc 720 gtaggcctgt agataagccc caggattttg gtgaagtgtt taatatgttc gataatgaac 780 ctagtacagc tacggtgaag aacatgcatc gtgatcgtta tcaagtcctc aggaagtgga 840 gtgccactgt cactggtggt cagtatgcga gcaaggaaca ggctttagtt aggcgttttt 900 ttagagttaa taattatgtt gtgtataacc agcaagaggc tggcaagtat gaaaatcata 960 ccgaggatgc attgatgctg tacatggcgt gtactcatgc ctctaaccct gtattcacta 1020 cgctgaagat tagaatctac ttctacgatt cggtcagcaa ttaataaaca ttaaatttta 1080 ttaaattaga ctgctcaata ctgtcagtcc cagcgattac attatataat acatgttcta 1140 ctgcgtttac aaccgtatta atacatataa tccctaatct atcgaggtat tttaatactt 1200 gggtcttaaa taccctcaag aaacgccaga tctgaggctg taaggtcgtc cagaccttga 1260 aatccatcca gcattgatgt agtcccaacg ctttcctcag gttgtggttg aagcgtatct 1320 ggatggttat tatgtcccac ggcctgttga acggcccgct gtcgtgctgg atgatcctga 1380 aatagagggg atttggaacc tcccagatat agaccccatt catcgcctga gctgcagtga 1440 tgagttcccc tgtgcgtgaa tccatggttg tggcagttga tgtgcacgta gtatgagcag 1500 ccgcaattga ggtctactct ccgtcgccga atggccttac gcttagctgc cctgtgttgg 1560 accttgattg gaacctgagt agagcggctc gctgagggag atgaaggtcg cattcttcag 1620 agcccaagcc ttcaatgcgc tattcttcgc ctcgtcaagg aattctttat agctggaatt 1680 gggcccagga ttgcagagga agatagtggg aattccccct ttaatttgaa ctggcttccc 1740 gtacttggtg tttgactgcc agtctctttg ggcccccatg aattccttaa agtgctttag 1800 atagtgcgga tctacgtcat caattacgtt gtaccatgca tcattgctgt aaaccctagg 1860 actcaagtcc agatgtccac acagataatt gtgtggacct aatgacctag cccatattgt 1920 tttgcctgta cgactatcgc cctcgatgac tatactgtta ggtctcaaag gcctcgcaga 1980 ggcacccatg acgttctctg acacccactc ctcaagttca tctggaactt ggtcaaatga 2040 agaggctgag aagggagaca catatacctc gggaggaggt gtaaaaatcc tatctaaatt 2100 agcatttaga ttatgaaatt gtaaaacata atccttgggt gctaactcct taatgactct 2160 aagagcctct ggcttactgc ctgtgttaag tgctgcggcg taagcgtcgt ttgctgactg 2220 ctgtccccct cttgcagatc ttccatcgat ctgaaactca ccccattcga tggtgtctcc 2280 atccttgtcg atgtaggact tgacgtctga gctggactta gcgctctgta tgttggggtg 2340 gaaactggtg ctgctgcttg ggtgtacaca atcgaattgc cgattgtttg tgattgtgag 2400 cttcccttcg aactgaagca gagcatggag gtgaggttcc ccattctgat ggagttctct 2460 gcaaatttta ataaatttga tgtttgtcgg aagactcaag cttcggaaga actcgagtaa 2520 gtgttctttg gtgagagaac acttagggta tgtgaggaat atatttttgg actgaattct 2580 gaatcgtggg tttctcatct ttgactcggt caattggaga cactcctgag caagtctcta 2640 gtgaattgga gacaatatat atgtgtctcc aaatggcatt cttgtaattc tcaaaaggta 2700 cagtcaaatt tcaaattcga atttcagatc caaaaagcgc catccgtata atatt 2755 //