ID AJ890226; SV 1; circular; genomic DNA; STD; VRL; 2757 BP. XX AC AJ890226; XX DT 19-MAR-2005 (Rel. 83, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Sri Lankan cassava mosaic virus - India [India:Kerala C4] ac1 gene, ac2 DE gene, ac3 gene, ac4 gene, av1 gene and av2 gene, isolate Kerala C4, DE complete virus segment XX KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; av1 gene; av2 gene; AC4 protein; KW AV2 protein; coat protein; replication enhancer; KW replication-associated protein; transcription activator protein. XX OS Sri Lankan cassava mosaic virus - India [India:Kerala C4] OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; OC Sri Lankan cassava mosaic virus. XX RN [1] RP 1-2757 RA Jeske H.; RT ; RL Submitted (09-MAR-2005) to the INSDC. RL Jeske H., Molecular biology and virology of plants, University of RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY. XX RN [2] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX DR MD5; f1734bda1eb75343ede0d9059847f7b2. XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Sri Lankan cassava mosaic virus - India FT [India:Kerala C4]" FT /segment="DNA A-like" FT /isolate="Kerala C4" FT /mol_type="genomic DNA" FT /country="India:Kerala, Pulikkal, Malappuram" FT /isolation_source="Manihot esculenta" FT /db_xref="taxon:454143" FT CDS 136..492 FT /gene="av2" FT /product="AV2 protein" FT /db_xref="GOA:Q5CAN4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q5CAN4" FT /protein_id="CAI64604.1" FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGSPPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCS" FT CDS 296..1066 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:Q5CAN3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5CAN3" FT /protein_id="CAI64605.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFVEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVRN" FT CDS complement(1063..1467) FT /gene="ac3" FT /product="replication enhancer" FT /db_xref="GOA:Q5CAN2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q5CAN2" FT /protein_id="CAI64606.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFSMPWDI FT ITVQIRFNHNLRRALGLHQCWMDFKVWTTLQPPTWRFLRVFKTQILKYLDRVGVISINT FT VVNAVEHVLYNVIHGTDRVEQSNLIKFNIF" FT CDS complement(1208..1615) FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:Q5CAN1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5CAN1" FT /protein_id="CAI64607.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPTVQHAVGHNNRPDTVQPQ FT PEESVGTTPMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1545..2600) FT /gene="ac1" FT /product="replication-associated protein" FT /db_xref="GOA:Q5CAN0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5CAN0" FT /protein_id="CAI64608.1" FT /translation="MRDPRFGIRSKNMFLTYPKCSLTKEHLLEFFRGLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGRLTITNNRQFDCVHPSSSTSFHPDIQSAKSSSDVKSYID FT KDGDTIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFPASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKIWALKNATFISLSEPLY FT SGSNQGPTQGS" FT CDS complement(2144..2446) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5CAM9" FT /protein_id="CAI64609.1" FT /translation="MGNLTSMLCFSSKGGSQSQTIGNSIVYTQAVAPVSTPTYRALSPA FT PTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2757 BP; 688 A; 631 C; 664 G; 774 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggaccccccc cacgtggaga tgtcccccac 60 tcagaacgct ctctcaaagc ctgtatagtt gtggtccccc tttaagtact tgctcagcaa 120 gttgtaatct gcacaatgtg ggaccctttg gtaaacgagt tccctgattc agttcacggt 180 ttccggtgta tgctcgccgt gaaatacctt cagctggttg aaggtactta ttcccccgat 240 acactcggtt acgatttaat cagagatttg atctctgtca tcagggccaa aaattatgtc 300 gaagcgacca gcagatatca tcatttcaac tcccgcctcg aaggttcgcc gccgtctgaa 360 cttcgacagc ccatacagca gtcgtgctgc tgtccccact gtccgcgtca caaaaagaca 420 agcctggaca aacaggccca tgaatcggaa gcccaggtgg tacaggatgt tcaaaagccc 480 agatgttcct aggggatgtg aaggcccatg taaggtccag tcattcgagt ccagacacga 540 tgtggtccat ataggtaagg tcatgtgcat ctctgatgtc actcgtggag ttgggcttac 600 tcatcgcgtg ggtaagaggt tttgcgttaa gtccgtttac atcctgggca agatatggat 660 ggatgaaaac attaagacca agaatcacac gaatagtgtg atgttcttcc ttgtaaggga 720 tcgtaggcct gttgataagc cccaggattt tgttgaagtg tttaatatgt tcgataatga 780 gcccagtaca gctacggtga agaacatgca tcgtgatcgc tatcaagtcc tcaggaagtg 840 gagtgccact gtcactggtg gtcagtatgc gagcaaggag caggctttag ttaggcgttt 900 ctttagggtt aataattatg ttgtgtataa ccagcaagag gctgggaaat atgagaacca 960 tactgagaat gcattaatgt tgtacatggc gtgtactcat gcctctaatc ctgtatacgc 1020 tacgttgaag attagaatct acttctatga ttcagtgaga aattaaaaaa tattaaattt 1080 tattaaatta gactgctcaa cacggtcagt cccatggatt acattgtaca atacatgctc 1140 tacggcgttt acaacagtat taatacttat aactcctacg cgatctaagt atttcaatat 1200 ttgggtctta aataccctca agaaacgcca ggtcggaggc tgtaaggtcg tccagacctt 1260 gaaatccatc cagcattggt gtagtcccaa cgctctcctc aggttgtggt tgaaccgtat 1320 ctggacggtt attatgtccc acggcatgct gaacggtcgg ctgtcgtgct ggatgatcct 1380 gaaatagagg ggatttggaa cctcccagat atagacgcca ttcatcgcct gagctgcagt 1440 gatgagttcc cctgtgcgtg aatccatggt tgtggcagtt tatgtgcacg tagtacgagc 1500 acccgcagtt gaggtctacc ctccgtcgcc ggatggcctt acgcttagct gccctgtgtt 1560 ggaccttgat tggaacctga gtagagcggc tcgctgaggg agatgaaggt cgcattcttc 1620 agagcccaaa tcttcaatgc gctattcttc gcctcgtcaa ggaattcttt atagctggaa 1680 ttgggcccag gattgcacag gaagatagtg gggattcccc ctttaatttg aactggtttc 1740 ccgtacttgg tgtttgactg ccagtccctt tgggccccca tgaattcctt aaagtgcttt 1800 agataatgcg gatctacgtc atcaatgacg ttgtaccatg catcattgct gtaaacccta 1860 ggactcaagt ccagatgtcc acatagatag ttgtgtggac ctaatgacct agcccacatt 1920 gttttgcctg tacgactatc gccctcgatg actatactat taggtctcaa aggcctcgca 1980 gaggcaccca tgacattctc tgacacccac tcctcaagtt catctggaac ttggtcaaat 2040 gaagaggctg ggaagggaga cacatatacc tcgggaggag gtgtaaaaat cctatctaaa 2100 ttagcattta gattatgaaa ttgtaaaaca taatccttgg gtgctaactc cttaatgact 2160 ctaagagcct ctggcttact gcctgtgtta agtgctgcgg cgtaagcgtc gtttgctgtc 2220 tgctgtcccc ctcttgcaga tcttccatcg atctgaaact caccccagtc gatggtgtct 2280 ccatccttgt cgatgtagga cttgacgtcg gagctggact tagcgctctg tatgtcgggg 2340 tggaaactgg tgctactgct tgggtgtaca caatcgaatt gccgattgtt tgtgattgtg 2400 agcctccctt cgaactgaag cagagcatgg aggtgaggtt ccccattctg atggagttct 2460 ctgcaaattt taataaattt gatgtttgtc ggaagactca agccccggaa gaactcgagt 2520 aagtgttctt tggtgagaga acacttaggg tatgtgagga acatattttt ggaccgaatt 2580 ccgaatcgcg ggtctctcat ctttgactgg gtcaattgga gacacccctg agcaagtctc 2640 tagtgaattg gagacaatat atatgtgtct ccaaatggca ttcttgtaat tctcaaaagt 2700 tacagtcaaa tttcaaattc gaatttgata tccaaaagcg gccatccgta taatatt 2757 //