ID AJ890225; SV 1; circular; genomic DNA; STD; VRL; 2757 BP. XX AC AJ890225; XX DT 19-MAR-2005 (Rel. 83, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene, av1 DE gene and av2 gene, isolate Kerala 17, complete virus segment XX KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; AC4 protein; av1 gene; av2 gene; KW AV2 protein; coat protein; replication enhancer; KW replication-associated protein; transcription activator protein. XX OS Sri Lankan cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2757 RA Jeske H.; RT ; RL Submitted (09-MAR-2005) to the INSDC. RL Jeske H., Molecular biology and virology of plants, University of RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY. XX RN [2] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX DR MD5; f387cb7282cb8a7933c0d32bdc7e8651. XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Sri Lankan cassava mosaic virus" FT /segment="DNA A-like" FT /isolate="Kerala 17" FT /mol_type="genomic DNA" FT /country="India:Kerala, Kattakuda" FT /isolation_source="Manihot esculenta cv. Kalikalan" FT /db_xref="taxon:161378" FT CDS 136..492 FT /gene="av2" FT /product="AV2 protein" FT /db_xref="GOA:Q5CAP0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q5CAP0" FT /protein_id="CAI64598.1" FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCS" FT CDS 296..1066 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:Q5CAN9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5CAN9" FT /protein_id="CAI64599.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVLTTLKIRIYFYDSVSN" FT CDS complement(1063..1467) FT /gene="ac3" FT /product="replication enhancer" FT /db_xref="GOA:Q709N9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q709N9" FT /protein_id="CAI64600.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFNRPWDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY" FT CDS complement(1208..1615) FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:Q5CAN7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5CAN7" FT /protein_id="CAI64601.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPAVQQAVGHNNHPDTLQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1545..2600) FT /gene="ac1" FT /product="replication-associated protein" FT /db_xref="GOA:Q5CAN6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5CAN6" FT /protein_id="CAI64602.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDAIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY FT SGSNQGPTQGC" FT CDS complement(2144..2446) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5CAN5" FT /protein_id="CAI64603.1" FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA FT QTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2757 BP; 692 A; 612 C; 657 G; 796 T; 0 other; accggatggc cgcgcccccc gctttgtggt ggaccccccc cacgtggaga tgtcccccac 60 tcagaacgct ccctcaaagc ctgtatagtt gtggtccctc tttaagtact tgctcagcaa 120 gttgtaatct gcacaatgtg ggaccctttg gtaaacgagt tccctgattc agttcacggt 180 ttccggtgta tgcttgccgt gaaatatctt cagctagttg aaggtactta ttcccccgat 240 acactcggtt acgatttaat cagagatttg atctctgtca tcagggccaa aaattatgtc 300 gaagcgacca gcagatatca tcatttcaac tcccgcctcg aaggttcgtc gccgtctgaa 360 cttcgacagc ccatacagca gtcgtgctgc tgtccccact gtccgcgtca caaaaagaca 420 agcctggaca aacaggccca tgaatcggaa gcccaggtgg tacaggatgt tcaaaagccc 480 agatgttcct aggggatgtg aaggcccatg taaggttcaa tcgtttgagt ccagacacga 540 tgtggtccat ataggtaagg tcatgtgcat ctctgatgtc actcgtggag ttgggcttac 600 tcatcgcgtg ggtaagaggt tttgcgttaa gtccgtttat atcctgggta agatatggat 660 ggatgaaaat attaagacca agaatcatac gaatagtgtg atgttcttcc ttgtaaggga 720 tcgtaggcct gttgataagc cccaggattt tggtgaagtg tttaatatgt tcgataatga 780 acctagtaca gctacggtga agaacatgca tcgtgatcgt tatcaagtcc tcaggaagtg 840 gagtgccact gtcactggtg gtcagtatgc gagcaaggaa caggctttag ttaggcgttt 900 ttttagagtt aataattatg ttgtgtataa ccagcaagag gctggcaagt atgaaaatca 960 taccgagaat gcattgatgc tgtacatggc gtgtactcat gcctctaacc ctgtattgac 1020 tacgctgaag attagaatct acttctacga ttcggtcagc aattaataaa cattaaattt 1080 tattaaatta gactgctcaa tactgtcagt cccagcgatt acattatata atacatgttc 1140 tacggcgttt acaaccgtat taatacatat aatccctaat ctatcgaggt attttaatac 1200 ttgggtctta aataccctca agaaacgcca ggtctgaggc tgtaaggtcg tccagacctt 1260 gaaatccatc cagcattgat gtagtcccaa cgctttcctc aggttgtggt tgaagcgtat 1320 ctggatggtt attatgtccc acggcctgtt gaacggccgg ctgtcgtgct ggatgatcct 1380 gaaatagagg ggatttggaa cctcccagat atagacgcca ttcatcgcct gagctgcagt 1440 gatgagttcc cctgtgcgtg aatccatggt tgtggcagtt gatgtgcacg tagtatgagc 1500 agccgcaatt gaggtctacc ctccgtcgcc gaatggcctt acgcttagca gccctgtgtt 1560 ggaccttgat tggaacctga gtagagcggc tcgctgaggg agatgaaggt cgcattcttt 1620 agagcccaag ccttcaatgc gctattcttc gcctcgtcaa ggaattcttt atagctggaa 1680 ttgggcccag gattgcagag gaagatagtg ggaattcccc ctttaatttg aactggcttc 1740 ccgtacttgg tgtttgactg ccagtctctt tgggccccca tgaattcctt aaagtgcttt 1800 agatagtgcg gatctacgtc atcaattacg ttgtaccatg catcattgct gtaaacccta 1860 ggactcaagt ccagatgtcc acacagataa ttgtgtggac ctaatgacct agcccacatt 1920 gttttgcctg tacgactatc gccctcgatg actatactat taggtctcaa aggcctcgca 1980 gaggcaccca tgacgttctc tgacacccac tcctcaagtt catctggaac ttggtcaaat 2040 gaagaggctg agaagggaga cacatatacc tcgggaggag gtgtaaaaat cctatctaaa 2100 ttagcattta gattatgaaa ttgtaaaaca taatccttgg gtgctaactc cttaatgact 2160 ctaagagcct ctggcttact gcctgtgtta agtgctgcgg cgtaagcgtc gtttgctgtc 2220 tgctgtcccc ctcttgcaga tcttccatcg atctgaaact caccccagtc gatggcgtct 2280 ccatccttgt cgatgtagga cttgacgtct gagctggact tagcgctctg tatgttgggg 2340 tggaaactgg tgctactgct tgggtgtaca caatcgaatt gccgattgtt tgtgattgtg 2400 agcttccctt cgaactgaag cagagcatgg aggtgaggtt ccccattctg atggagttct 2460 ctgcaaattt taataaattt gatgtttgtc ggaagactca agcttcggaa gaactcgagt 2520 aagtgttctt tggtgagaga acacttaggg tatgtgagga atatattttt ggactgaatt 2580 ctgaatcgtg ggtttctcat ctttgactcg gtcaattgga gacacccctg agcaagtctc 2640 tagtgaattg gagacaatat atatgtgtct ccaaatggca ttcttgtaat tctcaaaagt 2700 tacagtcaaa tttcaaattt gaatttgaga tccaaaagcg gccatccgta taatatt 2757 //