Dbfetch
ID AJ890224; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC AJ890224; XX DT 19-MAR-2005 (Rel. 83, Created) DT 23-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Sri Lankan cassava mosaic virus ac1 gene, ac2 gene, ac3 gene, ac4 gene, av1 DE gene and av2 gene, isolate Kerala 15, complete virus segment XX KW ac1 gene; ac2 gene; ac3 gene; ac4 gene; av1 gene; av2 gene; AC4 protein; KW AV2 protein; coat protein; replication enhancer; KW replication-associated protein; transcription activator protein. XX OS Sri Lankan cassava mosaic virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Jeske H.; RT ; RL Submitted (09-MAR-2005) to the INSDC. RL Jeske H., Molecular biology and virology of plants, University of RL Stuttgart, Pfaffenwaldring 57, Stuttgart, D 70550, GERMANY. XX RN [2] RX DOI; 10.1007/s00705-005-0624-8. RX PUBMED; 16132175. RA Rothenstein D., Haible D., Dasgupta I., Dutt N., Patil B.L., Jeske H.; RT "Biodiversity and recombination of cassava-infecting begomoviruses from RT southern India"; RL Arch. Virol. 151(1):55-69(2006). XX DR MD5; e7df072a0d733a7bcafacfccb368aa49. DR EuropePMC; PMC3163225; 21812981. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Sri Lankan cassava mosaic virus" FT /segment="DNA A-like" FT /isolate="Kerala 15" FT /mol_type="genomic DNA" FT /country="India:Kerala, Malayinkil" FT /isolation_source="Manihot esculenta cv. Black Cotton" FT /db_xref="taxon:161378" FT CDS 135..491 FT /gene="av2" FT /product="AV2 protein" FT /db_xref="GOA:Q5CAP0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q5CAP0" FT /protein_id="CAI64592.1" FT /translation="MWDPLVNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGSSPSELRQPIQQSCCCPHCPRHKKTSLDKQAHES FT EAQVVQDVQKPRCS" FT CDS 295..1065 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:Q5CAP5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q5CAP5" FT /protein_id="CAI64593.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPTVRVTKRQAWT FT NRPMNRKPRWYRMFKSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKIWMDENIKTKNHTNSVMSFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVFRTLKIRIYFYDSVSN" FT CDS complement(1062..1466) FT /gene="ac3" FT /product="replication enhancer" FT /db_xref="GOA:Q709N9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q709N9" FT /protein_id="CAI64594.1" FT /translation="MDSRTGELITAAQAMNGVYIWEVPNPLYFRIIQHDSRPFNRPWDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTTLQPQTWRFLRVFKTQVLKYLDRLGIICINT FT VVNAVEHVLYNVIAGTDSIEQSNLIKFNVY" FT CDS complement(1207..1614) FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:Q5CAN7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q5CAN7" FT /protein_id="CAI64595.1" FT /translation="MRPSSPSASRSTQVPIKVQHRAAKRKAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHPARQPAVQQAVGHNNHPDTLQPQ FT PEESVGTTSMLDGFQGLDDLTASDLAFLEGI" FT CDS complement(1544..2599) FT /gene="ac1" FT /product="replication-associated protein" FT /db_xref="GOA:Q5CAP2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5CAP2" FT /protein_id="CAI64596.1" FT /translation="MRNPRFRIQSKNIFLTYPKCSLTKEHLLEFFRSLSLPTNIKFIKI FT CRELHQNGEPHLHALLQFEGKLTITNNRQFDCVHPSSSTSFHPNIQSAKSSSDVKSYID FT KDGDTIDWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVIKELAPKDYVLQFHN FT LNANLDRIFTPPPEVYVSPFSASSFDQVPDELEEWVSENVMGASARPLRPNSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEAKNSALKAWALKNATFISLSEPLY FT SGSNQGPTQGS" FT CDS complement(2143..2445) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q5CAN5" FT /protein_id="CAI64597.1" FT /translation="MGNLTSMLCFSSKGSSQSQTIGNSIVYTQAVAPVSTPTYRALSPA FT QTSSPTSTRMETPSTGVSFRSMEDLQEGDSRQQTTLTPQHLTQAVSQRLLESLRS" XX SQ Sequence 2756 BP; 692 A; 615 C; 656 G; 793 T; 0 other; accggatggc cgcgcccccg ctttgtggtg gacccccccc acgtggagat gtcccccact 60 cagaacgccc cctcaaagcc tgtatagttg tggtccctct ttaagaactt gctcaacaag 120 ttgtaatctg cacaatgtgg gaccctttgg taaacgagtt ccctgattca gttcacggtt 180 tccggtgtat gcttgccgtg aaatatcttc agctagttga aggtacttat tcccccgata 240 cactcggtta cgatttaatc agagatttga tctctgtcat cagggccaaa aattatgtcg 300 aagcgaccag cagatatcat catttcaact cccgcctcga aggttcgtcg ccgtctgaac 360 ttcgacagcc catacagcag tcgtgctgct gtccccactg tccgcgtcac aaaaagacaa 420 gcctggacaa acaggcccat gaatcggaag cccaggtggt acaggatgtt caaaagccca 480 gatgttccta ggggatgtga aggcccatgt aaggttcaat cgtttgagtc cagacacgat 540 gtggtccata taggtaaggt catgtgcatc tctgatgtca ctcgtggagt tgggcttact 600 catcgcgtgg gtaagaggtt ttgcgttaag tccgtttata tcctgggtaa gatatggatg 660 gatgaaaata ttaagaccaa gaatcatacg aatagtgtga tgtccttcct tgtaagggat 720 cgtaggcctg ttgataagcc ccaggatttt ggtgaagtgt ttaatatgtt cgataatgaa 780 cctagtacag ctacggtgaa gaacatgcat cgtgatcgtt atcaagtcct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgcg agcaaggaac aggctttagt taggcgtttt 900 tttagagtta ataattatgt tgtgtataac cagcaagagg ctggcaagta tgaaaatcat 960 accgagaatg cattgatgct gtacatggcg tgtactcatg cctctaaccc tgtattccgt 1020 acgctgaaga ttagaatcta cttctacgat tcggtcagca attaataaac attaaatttt 1080 attaaattag actgctcaat actgtcagtc ccagcgatta cattatataa tacatgttct 1140 actgcgttta caaccgtatt aatacatata atccctaatc tatcgaggta ttttaatact 1200 tgggtcttaa ataccctcaa gaaacgccag gtctgaggct gtaaggtcgt ccagaccttg 1260 aaatccatcc agcattgatg tagtcccaac gctttcctca ggttgtggtt gaagcgtatc 1320 tggatggtta ttatgtccca cggcctgttg aacggccggc tgtcgtgctg gatgatcctg 1380 aaatagaggg gatttggaac ctcccagata tagacgccat tcatcgcctg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gtggcagttg atgtgcacgt agtatgagca 1500 gccgcaattg aggtctaccc tccgtcgccg aatggcctta cgcttagctg ccctgtgttg 1560 gaccttgatt ggaacctgag tagagcggct cgctgaggga gatgaaggtc gcattcttca 1620 gagcccaagc cttcaatgcg ctattcttcg cctcgtcaag gaattcttta tagctggaat 1680 tgggcccagg attgcagagg aagatagtgg gaattccccc tttaatttga actggcttcc 1740 cgtacttggt gtttgactgc cagtctcttt gggcccccat gaattcctta aagtgcttta 1800 gatagtgcgg atctacgtca tcaattacgt tgtaccatgc atcattgttg taaaccctag 1860 gactcaagtc cagatgtcca cacagataat tgtgtggacc taatgaccta gcccacattg 1920 ttttgcctgt acgactatcg ccctcgatga ctatactatt aggtctcaaa ggcctcgcag 1980 aggcacccat gacgttctcg gacacccact cctcaagttc atctggaact tggtcaaatg 2040 aagaggctga gaagggagac acatatacct cgggaggagg tgtaaaaatc ctatctaaat 2100 tagcatttag attatgaaat tgtaaaacat aatccttggg tgctaactcc ttaatgactc 2160 taagagcctc tggcttactg cctgtgttaa gtgctgcggc gtaagcgtcg tttgctgtct 2220 gctgtccccc tcttgcagat cttccatcga tctgaaactc accccagtcg atggtgtctc 2280 catccttgtc gatgtaggac ttgacgtctg agctggactt agcgctctgt atgttggggt 2340 ggaaactggt gctactgctt gggtgtacac aatcgaattg ccgattgttt gtgattgtga 2400 gcttcccttc gaactgaagc agagcatgga ggtgaggttc cccattctga tggagttctc 2460 tgcaaatttt aataaatttg atgtttgtcg gaagactcaa gcttcggaag aactcgagta 2520 agtgttcttt ggtgagagaa cacttagggt atgtgaggaa tatatttttg gactgaattc 2580 tgaatcgtgg gtttctcatc tttgactcgg tcaattggag acacccctga gcaagtctct 2640 agtgaattgg agacaatata tatgtgtctc caaatggcat tcttgtaatt ctcaaaagtt 2700 acactcagat ttcaaagtcg aatttgaaat ccaaaagcgg ccatccgtat aatatt 2756 //