ID AJ879490; SV 2; linear; genomic RNA; STD; VRL; 3583 BP. XX AC AJ879490; XX DT 07-FEB-2005 (Rel. 82, Created) DT 22-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Cucumber mosaic virus segment RNA 1 complete sequence XX KW 1a gene; replicase protein. XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RC revised by [3] RA Mahinghara B.K.; RT ; RL Submitted (04-FEB-2005) to the INSDC. RL Mahinghara B.K., Plant Virus Lab, Floriculture Division, Institute of RL Himalayan Bioresource Tech., IHBT CSIR, Palampur, Himachal Pradesh - 176 RL 061, INDIA. XX RN [2] RA Mahinghara B.K., Hallan V., Zaidi A.A.; RT "Variability in the genome of cucumber mosaic virus infecting lilies in RT India"; RL Unpublished. XX RN [3] RP 1-3583 RA Mahinghara B.K.; RT ; RL Submitted (10-MAR-2005) to the INSDC. RL Mahinghara B.K., Plant Virus Lab, Floriculture Division, Institute of RL Himalayan Bioresource Tech., IHBT CSIR, Palampur, Himachal Pradesh - 176 RL 061, INDIA. XX DR MD5; 4c91c46773fe263ffc2074e1ac7923e8. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3583 FT /organism="Cucumber mosaic virus" FT /segment="RNA 1" FT /host="Lilium longiflorum" FT /isolate="Palampur" FT /mol_type="genomic RNA" FT /clone="1" FT /db_xref="taxon:12305" FT CDS 96..3077 FT /gene="1a" FT /product="replicase" FT /db_xref="GOA:Q5F2S3" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5F2S3" FT /protein_id="CAI51649.2" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHRRRGR FT KVYIRNVLGVKDFEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLVGKLNSTVFSRVRKFKTLVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISMWFTALTR FT PLRVFFSNVVQALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAHVATQ FT AVTDGKILAEQKAEKLAEKLAQPVREVSDSPETSSQTSDDTADVCGEEREVSELDSLST FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNSAGGDDKRNSLEGNLNFVFD FT TYFSVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNGECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFNS FT SDSKEACAFVRTADSVLLNECPSVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPRGTHSKYTKW FT VSQSKVRRSVTSRAIASVTVVDLDPSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEHCGVLNGDLIAEC FT VARA" XX SQ Sequence 3583 BP; 878 A; 826 C; 880 G; 999 T; 0 other; gttttattta caagagcgta cggttcaatc cctgcctccc ctgtaaaact accctttgaa 60 aacctctctt ctataatctt ttcttagtaa ttcctatggc gacgtcctcg ttcaatatca 120 atgaattggt agcctcccac ggcgataaag gactactcgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcgacg taggggccgt aaggtctaca 240 tccgaaacgt tttgggtgta aaggatttcg aggtcatccg gaatcggtat ggaggaaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctggactctt tcccttcatc aggtctgcgg caggacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacataac gtacactgtt 480 gttccccttg tttgggtatc cgcgataaga tgcgccatgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgatggtcg gcagccggat ttctgcactc 600 aaccggctgc ggattgcaaa gtacaagccc actttgctat atctattcat ggaggttatg 660 atatgggctt tagaggatta tgtgaagcga tgaatgctca cggaaccact attttgaagg 720 gaacgatgat gttcgatggt gcgatgatgt ttgacgacca aggtgtaata cccgaactta 780 attgtcagtg gaggaagatc aggagtgctt tctccgaaac tgaagacgtc acgccactgg 840 ttggtaagct taattccacg gttttctccc gcgtgcggaa gttcaagacg ctggtagcct 900 ttgatttcat caacgagtct accatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttcttacgga ccagacttat tcgtaccgag ggatgactta cggtatcgaa cgctgcgtta 1020 ttcacgctgg tattatgacg tacaagatta tcggcgtacc tgggatgtgt ccacccgaac 1080 tcattcgaca ttgtatttgg ttcccctcta ttaaagacta tgttggtcta aagattcccg 1140 cgtcgcagga cttggtggag tggaaaacag tgcggatttt aacgtcaaca ttacgtgaga 1200 ctgaagagat tgctatgagg tgttataatg ataagaaagc gtggatggaa caattcaagg 1260 ttatcctagg tgttctatcc gcgaaatcat ctaccattgt cattaatggt atgtccatgc 1320 aatctggcga gcgaatagac attaatgact atcattacat cggtttcgcc attcttcttc 1380 acacaaaaat gaagtacgaa caacttggga aaatgtatga tatgtggaat gcttcgagta 1440 tttcgatgtg gttcaccgcg ctgactcgcc cgttgcgcgt gtttttctcc aatgttgttc 1500 aagcactatt cccgactttg agaccccgcg aggaaaaaga attcctgatc aagctctcca 1560 ccttcgtgac ttttaatgaa gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catccgctgc acatgttgcc acgcaggctg ttaccgatgg gaagattttg gctgagcaga 1680 aagccgagaa gcttgctgaa aagctcgcac aacccgtgag agaggtatcg gacagtcctg 1740 agacgtcatc tcaaacgtct gatgataccg ctgatgtttg tggagaggag cgagaggttt 1800 cggaactcga ctccctatca actcagacac gttcccccat cactagagtt gctgaaagag 1860 ctactgccat gttggagtat gccgcttatg agaaacaatt acacgacacc acagtgtcta 1920 atttaaagcg tatttggaat tcggcgggcg gtgatgacaa aagaaactcc ctcgagggta 1980 atctgaattt tgttttcgat acgtattttt ccgttgatcc tatggtgaac attcatttct 2040 ccacgggtcg gtggatgcgt cctgtgcccg agggtattgt ttattctgtt ggttataatg 2100 aacgcggttt aggtccgaag tctgatggag agctttacat tgtcaatggt gaatgcgtga 2160 tttgtaacag tgagtcttta tctgctgtca cgcgttctct tcaagctcca accgggacca 2220 ttagtcaagt tgacggagtt gctggttgcg ggaaaaccac ggcaattaaa tccatttttg 2280 agccgtccac tgatatgatc gttaccgcga acaagaagtc cgcccaagat gtacgtatgg 2340 cacttttcaa ttcgtcggat tccaaagaag cttgcgcctt tgttcgaaca gccgattccg 2400 tcctacttaa tgaatgtccg agtgttagta gggttttggt tgatgaggtc gttttgctac 2460 actttggtca attatgtgcc gtcatgtcta agttgaaggc tgtgcgagct atatgttttg 2520 gggattcgga gcagattgct ttttcctcgc gtgatgcctc ctttgacatg cgtttctcta 2580 agattattcc tgatgaaact agtgatgctg acaccacatt ccgtagccca caagatgttg 2640 taccgcttgt gcgtttaatg gctacgaagg cccttccgag agggacccat tcaaaataca 2700 cgaaatgggt ttctcaatct aaagtgagaa gatctgttac atctcgtgcc atcgctagcg 2760 tgacagtggt tgacttggat ccttccaggt tctacataac tatgacccaa gctgataagg 2820 cctcactgat ttcaagggcg aaagagatga atttaccaaa gacattctgg aatgaaagga 2880 ttaaaaccgt gcatgagtct caaggtatct ccgaagacca cgttactttg gtaagattaa 2940 agagtacaaa atgtgacctg tttaaacagt tttcttactg tctcgttgca ctgactagac 3000 acaaggtcac attccgctac gagcactgtg gtgtgttgaa cggcgattta atcgccgaat 3060 gtgttgctcg tgcctagcgg cctccctccc gcgggagacc gctcctccct ccgatgtggc 3120 gggagctgag ttggcagtat tgctacaaac tgtctgaagt cactaaacat agtgtgtcct 3180 gtacacattg tggtgaccgg gttgtccatc cagcttacgg ctaaaatggt cagtcgtgga 3240 gaaatccgcg ccagtagact tacaagtctc tgaggcaccc ttgaaaccat ctcctaggtt 3300 tcttcggaag gacttcggtc cgtgtacttc tagcacaatg tgctagttta gggtacgggt 3360 gtcccccact tttgtggggc tctcctcaag gagaccaaat cgaattcccg cggccgccat 3420 ggcggccggg agcatgcgac gtcgggccca attcgcccta tagtgagtcg tattacaatt 3480 cactggccgt cgttttacaa cgtcgtgact gggaaaaccc tggcgttacc caacttaatc 3540 gccttgcagc acatccccct ttcgccagct ggcgtaatag cga 3583 //