ID AJ876793; SV 1; linear; genomic RNA; STD; VRL; 4444 BP. XX AC AJ876793; XX DT 20-FEB-2005 (Rel. 82, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Rice yellow mottle virus complete genome, serotype S6, country Tanzania, DE Mangula XX KW coat protein; complete genome; ORF1; ORF2a; ORF2b; ORF4; P1; KW protease and VPg; RNA-directed RNA polymerase. XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4444 RA Winter S.; RT ; RL Submitted (19-JAN-2005) to the INSDC. RL Winter S., Plant Virus Division, DSMZ, c/o BBA, Messeweg 11/12, 38104, RL GERMANY. XX RN [2] RA Traore O.; RT "Mechanisms of emergence of Rice yellow mottle virus inferred from large RT scale and high-resolution phylogeographic studies"; RL Unpublished. XX DR MD5; 525072b9764ef72fbb5574a7f3e10c64. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4444 FT /organism="Rice yellow mottle virus" FT /serotype="S6" FT /mol_type="genomic RNA" FT /country="Tanzania:Mangula" FT /isolation_source="Oryza sativa (rice)" FT /db_xref="taxon:31744" FT CDS 81..554 FT /gene="ORF1" FT /product="P1" FT /function="putative movement and gene silencing FT suppression" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:Q5F301" FT /protein_id="CAI45861.1" FT /translation="MTRLEVLIRPTEQTVAKANAVGYTHALTWVWHSQTWDVDSVNDPV FT LRADFNPNGVGWVAVSFACTQCTAHYYTCEQVKFFTNIPSVHYDVVCADCERRVQQDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRYDRYLNF" FT CDS 606..2423 FT /gene="ORF2a" FT /product="protease and VPg" FT /db_xref="GOA:Q5F300" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q5F300" FT /protein_id="CAI45862.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIALAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRDYVVDVSY FT NGHVIPVILDFATATALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYRGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQPSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRRRSKRIEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSESTTGTPLATPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSSHSKKGTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT CDS 2090..3601 FT /gene="ORF2b" FT /product="RNA-directed RNA polymerase" FT /EC_number="2.7.7.48" FT /db_xref="GOA:Q5F2Z9" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q5F2Z9" FT /protein_id="CAI45863.1" FT /translation="MPFSYVGKSGVVFGEHAGKSVCAAVKDAISVFPDLEGFGWPERGS FT KAELDSLILQAGRFNRTVCPPGLAEAVQSLQERYPKVPPRRCLRDEWRFDDIFDEVERI FT LCETGEVNSASSPGVPLAGLANSNGEVRKLGRDLVCLAVVERLNALASVDPRQHNWTPR FT ELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSVSLVDQLVERMLFGPQNNTEISTW FT WQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEADISGFDWSVQDWELWSDLAIRIN FT RGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQELPGLMKSGSYCTSSTNSRIRCLMA FT ELIGSPWCIAMGDDSVEGWIEGAQSKYALLGHTCKEYFPCKTRGRELVEFNFCSHLIRK FT GHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVWGRIEQYLRGIGRVSHKDGQEGQE FT NQLQPKSARQEEPTSPRAFGGAPASTGTSGSGLPDIWDGSWSTIF" FT CDS 3444..4163 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q5F2Z8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5F2Z8" FT /protein_id="CAI45864.1" FT /translation="MARKGKKINSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT FT VPGPLSSNVWPINRSVEFLTDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWRPTRW FT DVVYLPEISAAAAGSIEMCYLYDYADTVPNDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDAPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4444 BP; 969 A; 1167 C; 1282 G; 1026 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacac tgcatcgtgt atgacacggt tggaagttct tatacgaccg actgagcaga 120 ctgtggcaaa agccaacgcc gtgggctata cgcacgcact cacctgggtt tggcattctc 180 agacctggga cgttgattct gtgaacgatc cagttctcag agccgacttc aaccccaacg 240 gggtgggctg ggtggcagtg tcgtttgcct gtactcagtg cacggctcac tactacacgt 300 gtgagcaggt gaagttcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgcgagcg ccgtgttcag caggacgacg agatcgaccg tgagcaccaa gagcgcaacg 420 cagagatttc tgcctgcaac gctcgagctt tgagcgaggg aagaccagca agcctggtgt 480 acctctctcg ggacgcttgt gatattcctg agcactccgg aacgtgccgg tacgacaggt 540 acctcaactt ttgagggcca gcctgccgac atccaaggaa cggtcttggt tcagactaac 600 gcgggatggg ctcttctgtt gttggtcgct ttctcacacg caccaaggaa acgacgaggg 660 tggattccaa cctcctcatc gccttggctg ggttgatagc ggccgcgata gtctcagagc 720 gcctgcccgt gacggcgtca ttgtgggcaa tcccctcagc tatcatagca aactggatcg 780 tgctgtcagc tcacgagagc ttcagccggt tcgtggaggg ggttgaggtt gagcctttgt 840 ccacacttcg gtatggtaag gttcaatccg ctccaaggtt cgatccctcc cgggactacg 900 tggtcgacgt ttcctacaac ggccatgtga tccctgtgat attggacttc gccacggcga 960 cagctctgtc ggttccccaa agagtaaacc ctggggtctc gatggaggcg agtcgtgggg 1020 ggctcccacc gacgtccgtc aaactcgaag atgtgccgcc gagcgttgtg gttttgtacc 1080 atgactctgt caggctaggc ctaggaacta gagtgcgaac tcctactggt cgtgatctcc 1140 tcatgaccaa tcaccatatc gccgctctag agcctaatgg gatcgcgtac aggggccacc 1200 ttaagaaagt ggctctggac gcgccagtca tcgcatgtga ccatccacac atagactgcg 1260 cgttttatga ggtccctccc aagatctggt ctctcttggg ggtcaagtct gccagtttga 1320 agccattggt taagcaaact gcggtgtcac tcttcggtgg ctcgtcatct actgacttct 1380 caagttgtgt tgggatagcc cagattgggg acaacccgtt cctgatacgg catcaaagca 1440 cgacttgcag tggatggtcg ggctccccgc tctaccacaa agggtgcgtg gttggtttac 1500 atataggtgc tgcggatggt tataatgtgg catctaatgt agcctggtac ttccatacct 1560 tcaagaagga agtagtcgtt gagtctcctt tcgagattta cggcaaattc cgagaagcta 1620 actctgagga gtatgacgaa agtctgcgac atggagtgca gtatgcggag tacgacttct 1680 ctggtgatac catccgggcg tcttccaaca cctgggtgcg tgagagagag aggtaccacg 1740 ctgaggaacg tcgtaagtcc ggccagccta gctgggcaga tcgttttggt gacgacagtg 1800 gcgaggatgt tgatatcgag acatcgcatc ccgtagcacc gtcaatatct aagacgcggc 1860 ggagacggtc aaagcgcatt gagcagttcg tcgatgcggt ttccgagtgt tccttctcgt 1920 tcgagtcagc tcacgagggg ataactccgg agacctctgc ttatgaccac gttcctttaa 1980 actgccaggg ggcgggctcg agcctacggg cgagtccgcc cttggacggc ttatccaact 2040 cggagagtac cactgggact cccttggcga ctccctccct tccgacggaa tgcccttcag 2100 ctacgttgga aaatcgggtg tcgtctttgg agaacatgct gggaaaagtg tctgcgcagc 2160 tgtcaaagac gcaatctcag tattcccaga tcttgaagga tttggctggc ctgagagggg 2220 aagtaaagca gagcttgact ccctcatcct ccaagccggc cggttcaaca gaacggtatg 2280 tccccccggg ctcgcggaag cagtccagtc actccaagaa aggtacccaa aagtcccccc 2340 caggcgatgc ctcagggacg agtggaggtt cgacgacatc ttcgatgaag tcgaaagaat 2400 cctctgcgaa accggcgaag tgaattccgc ttcctcgccg ggggtgccgc tagcgggcct 2460 cgccaactcc aatggtgagg tccgcaagct ggggagagac ttggtatgtt tagctgtggt 2520 agagcgactg aatgccttag cttcggttga cccccgccag cacaactgga cacccaggga 2580 gctggtagag aaaggtcttt gtgatcctgt gcgtttgttc gttaagaacg agccgcaccc 2640 acagaagaaa ttgcgtgaac gtcgattcag gctgatttcc tctgtttctc tagtcgacca 2700 gctggtggag cggatgcttt tcgggcctca gaacaacacc gagatctcaa cttggtggca 2760 gtggccctcg aagccgggca tgggtctgtt gactcgtgaa caaatccgct tggtgtggga 2820 cgatgtgttc cagaaacacc aggcccaccc tgcggctgag gcagacatat cggggtttga 2880 ctggtctgtt caggactggg agttgtggtc agacctcgcg atccgaatta acagagggag 2940 tttctccgga aacctcagga aagcggctat tagtcgttac tactgtttca tgaactctgt 3000 tttccaactc tcagatggaa ccctcattca gcaagagtta cccggattga tgaaatccgg 3060 ttcctattgc acctcctcca cgaattcacg catacgctgc cttatggctg agctcattgg 3120 ctcgccttgg tgcatcgcca tgggtgatga ctctgtggag gggtggattg agggggccca 3180 atccaagtac gctttgctgg gtcacacctg caaggagtac ttcccgtgta aaaccagggg 3240 ccgtgagctc gtggaattca atttctgttc acacttgatc aggaaggggc atgctgagct 3300 aacgtcatgg ccgaaggcgt tgtttcgctt tctgtctagc aagcatgagg attttgaaga 3360 tctgtgggtt gagcttcaca cgtgcggggt gtggggcagg atcgaacaat acctgcgtgg 3420 gatagggcga gtctcccaca aagatggcca ggaagggcaa gaaaatcaac tccaaccaaa 3480 atcagcaagg caagaagagc cgacgtcccc gcgggcgttc ggcggagccc cggcttcaac 3540 gggcaccagt ggctcaggcc tcccggatat ctgggacggt tcctggtcca ctatcttcta 3600 atgtctggcc gattaatcgc tccgtggaat tcctgacgga ttttaagcgg agcgccacat 3660 ccacagaagc gaccatactt aattgtgtgc cgtttaatct gccccgggtg tggagtcttg 3720 cacgctgtta ttccttgtgg aggccaacga ggtgggacgt cgtctatctc cctgagatta 3780 gtgcggcagc ggctggaagt attgagatgt gctatctcta cgactatgcc gacacagtcc 3840 caaatgacac gggcaagatg agcaggacgg cgggtttcgt cacctctagc gtttggtacg 3900 gcgcagaggg ctgccatttg ctaactggtg gctcagcacg aaatgccgtg gtcgcctcga 3960 tggactgttc ccgagtcgac tggaaacgcg tcactagttc tattcctagt ggcgtggatc 4020 ccaacgtcgt aaacaccata ctgccagcta ggctagctgt gcggtcgtcg attaaaccgg 4080 cggttgatga tgcgccagga aaactgtacg ccatcgtcag tatggtcctg cgggatccag 4140 ttgatccaac actcaatacg tgaactggat ctggtggaga taggtattgg caccagtgat 4200 gaccaacgga ttagctcaga gatcgactac cctgaaaagg atgttgagcg tttgtgaacg 4260 cgggcttaat cctaagaggc catactggcg cctatcccac gtgaggagtc gcactcacat 4320 caacccaaag cgacccatgc gctggatagt gcttacccgg ctggtttcgg agctgccggg 4380 aggacctttt cacactccga attctccacg tcttccgaga aaattctcgg gatgggtggg 4440 ggag 4444 //