ID AJ865077; SV 1; linear; genomic RNA; STD; VRL; 3540 BP. XX AC AJ865077; XX DT 28-SEP-2005 (Rel. 85, Created) DT 28-SEP-2005 (Rel. 85, Last updated, Version 1) XX DE Shallot yellow stripe virus partial gene for polyprotein, genomic RNA, DE isolate ZQ1 XX KW coat protein; NIa protease; NIb polymerase; polyprotein; VPg protein. XX OS Shallot yellow stripe virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-3540 RA Adams M.J.; RT ; RL Submitted (22-NOV-2004) to the INSDC. RL Adams M.J., Plant Pathogen Interactions Division, Rothamsted Research, RL Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-005-0580-3. RX PUBMED; 15968472. RA Chen J., Wei C.B., Zheng H.Y., Shi Y.H., Adams M.J., Lin L., Zhang Q.Y., RA Wang S.J., Chen J.; RT "Characterisation of the welsh onion isolate of Shallot yellow stripe virus RT from China"; RL Arch. Virol. 150(10):2091-2099(2005). XX DR MD5; c6402b445a3410ade4d0d8f5c2a92d32. XX FH Key Location/Qualifiers FH FT source 1..3540 FT /organism="Shallot yellow stripe virus" FT /host="Allium fistulosum" FT /isolate="ZQ1" FT /mol_type="genomic RNA" FT /country="China:Shandong: Zhangqiu" FT /db_xref="taxon:62059" FT CDS <1..3343 FT /codon_start=2 FT /product="polyprotein" FT /db_xref="GOA:Q3LE80" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q3LE80" FT /protein_id="CAI23783.1" FT /translation="MEMQALHLNRAKVLEAYYIKAGADKALKADLDRDRVLKVTLTPHD FT PLMVCHNFETIAGFPDREGEFRRTGPVETVTKDEIPKAQSYEPVYEVSYEAKSLCSGPR FT NYTAIAGIICRLKLDSDGHTREIYGIGYGPYVITNQHLFTRNNGTLKIKSQHGNFLIKN FT TAQLQLYPIDKMDLVIIKLPKDHPPFSQKANFRTPKEREKVSMVCVEFLPSSNTPSVSE FT PSFTFPERNSHFWKHWISTKEGHCGLPFVSLQDGNIVGIHSLSDNGNAVNYFTGFPENF FT KEEYLDRVGDVEWVKGWIHNTDNIAWGSLNLTKGAPESCFKATKLISDIINGVAFQAQD FT CTWLTKRLDGNLKCVGACPGNLITKHVVKGKCPMFQLYLNTDERVRAFFEPLLGFYGKS FT CLNKEAYIKDFTKYSSDIVVGEVDTDVFEEAINSVENILLKGGMTKCNFVTDPDEIMNS FT LNMKAAVGALYGGKKEAYFKDMPKEDVEHLIFMSCQRLYLGKMGIWNGSLKAEIRPIEK FT VQANKTRSFTAAPIETLLGGKVCVDDFNNNFYRRNLAIPSTVGITKFYKGWDDLMCSLP FT DGWVYCDADGSRFDSSLTPYLMNAVLNIRLRFMEEWDIGQDMLKNLYTEIIYTPIATPD FT GSIIKKFKGNNSGQPSTVVDNTLMVMLSVQYTLLKNDVKFMEQESIIRYFCNGDDLLIA FT IHPDYSHILDSFTKHFADLGLEYDFSSRTTNREELYFMSHRGLLRDGVYIPKLDKERIV FT SILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYQWVLEQAPYNLIAQTGKAPY FT IAETALKRLYMNEQATESELEKYSRLYQILDEQIPTPSYVSYQASETEDAANVNTDKQV FT GKNKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQVDSYNT FT RATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQME FT YPLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLRECSLARYAFD FT FYEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHT FT LLGLRM" FT mat_peptide <2..286 FT /product="VPg protein" FT mat_peptide 287..1012 FT /product="NIa protease" FT mat_peptide 1013..2566 FT /product="NIb polymerase" FT mat_peptide 2567..3340 FT /product="Coat protein" XX SQ Sequence 3540 BP; 1190 A; 636 C; 806 G; 908 T; 0 other; aatggaaatg caagcgttgc atctaaacag agcaaaagtc ctggaggcat attatataaa 60 agcaggcgca gataaagcat tgaaagctga cttggatagg gatagagtgc taaaagtcac 120 acttacacca catgatccac tgatggtttg ccataatttc gaaaccattg caggctttcc 180 ggatagagaa ggcgagttta ggcgcacagg gccagtcgaa actgtcacga aagatgaaat 240 accaaaggca caatcatatg aaccagttta tgaagtatca tatgaggcaa aatcgctttg 300 ttcagggccg agaaactaca cagcaatagc tggtattatt tgtcgtctta agttggatag 360 tgatgggcac acgagagaga tttacggaat tggatacggt ccatacgtta taacgaatca 420 gcatttattc acacgaaaca acggaacact gaaaattaag tcacagcacg gaaattttct 480 cattaagaat acagcacaat tgcaactgta ccctatagat aagatggacc tcgttattat 540 aaagttacct aaggatcatc ctccatttag ccagaaggca aatttccgaa caccgaagga 600 acgcgagaaa gttagcatgg tttgtgttga gtttcttcca agtagtaata caccatcagt 660 ctctgagccg tcattcacat tcccagagag aaactctcat ttttggaagc attggatttc 720 aacgaaggaa ggtcattgtg ggctcccatt tgtgtcgtta caggatggca atatagttgg 780 tattcatagt ttgtcagaca atggtaatgc agttaattat ttcaccggat ttcctgagaa 840 ttttaaagag gaatatttag accgtgtggg tgacgtcgaa tgggtcaaag gctggattca 900 taacacagat aatattgctt ggggatctct gaacttaaca aaaggtgcac cagagtcatg 960 ctttaaagca actaaactga tatcagacat catcaacgga gtcgcatttc aggcacagga 1020 ctgcacatgg ttaacaaaga gactcgatgg gaacctgaag tgtgttggtg cgtgtccagg 1080 caatttgatc acaaaacatg tcgtcaaggg aaagtgtccc atgtttcagt tatatttgaa 1140 cacagatgag agagtcagag cattctttga accacttctt gggttttacg gtaagagttg 1200 cttgaacaaa gaagcatata taaaggactt tacaaaatac tcaagtgata tagtggttgg 1260 tgaagtcgat actgatgtgt ttgaagaagc aataaatagc gttgaaaaca ttctcttgaa 1320 aggcggcatg acaaaatgca attttgtaac tgacccggat gagataatga attcattgaa 1380 tatgaaggca gccgttggcg cgttatatgg agggaagaaa gaagcgtact ttaaggacat 1440 gccaaaagag gatgttgaac atttaatatt catgagttgc caaaggctgt acttgggtaa 1500 aatgggtatt tggaatggct cactcaaagc agaaatacga ccaatagaga aggttcaagc 1560 aaacaaaaca cgatctttca cagcagctcc aattgaaaca ctattaggtg gaaaggtgtg 1620 tgttgacgat ttcaacaata acttctatag acggaatcta gcgattcctt caacagttgg 1680 aattacgaaa ttttacaaag gatgggatga tcttatgtgt tcactgccag atgggtgggt 1740 ttattgtgat gcagatggtt cgcgctttga tagctcatta acaccgtatc ttatgaatgc 1800 agtgctaaac attagactac gatttatgga agaatgggac atcggacaag atatgcttaa 1860 aaacttgtac actgagatta tttacacacc aatcgcaaca cctgatggct caatcattaa 1920 gaaatttaaa ggaaacaata gtgggcagcc ttctacagtg gtggacaata cattaatggt 1980 aatgcttagt gttcaataca cattattaaa gaatgatgtc aaattcatgg aacaagaatc 2040 tatcatcaga tacttttgta atggtgatga tcttcttatc gcaattcatc cagactacag 2100 tcacatatta gattcgttca cgaagcattt cgctgacttg ggtcttgaat atgacttttc 2160 gagtcgaacc acaaatcgag aagaattgta cttcatgtct catagaggct tattaagaga 2220 tggtgtttat atacccaaac tcgataaaga acgcatagtt tcaatacttg agtgggacag 2280 agctaaggag ccagaacatc gactggaagc tatttgcgcc gccatggttg aagcgtgggg 2340 atatgacgaa ttactacatg agataagatt attttaccaa tgggtgttag agcaagcacc 2400 atacaactta atagcacaga ctggaaaggc accatacata gcagaaacgg cactaaaacg 2460 actgtatatg aatgaacaag caacagaaag tgagcttgaa aagtacagtc gactctatca 2520 aatcctggac gagcaaatac caacaccaag ttatgtgtca taccaagcat cagaaacaga 2580 agatgctgca aatgtaaaca ccgacaagca agttggaaag aacaaagaca aggacaggga 2640 tgttgatgtt ggcacatcag gcgagttttc agtaccgaag gtgaagatgt tatcagacaa 2700 aatgcgatta ccacgagtcg ggaagaaggt gatacttaac ggtaaacatc ttctctcata 2760 caagcctgat caagtcgatt cgtacaatac aagggcaaca catgcacaat tcaaaacatg 2820 gtacgatgca gttaaactcg aatatgaatt aacagacgaa caaatgaaaa tagttatgaa 2880 tgggttgatg gtgtggtgca tcgagaatgg cacatcacag aacttgacgg gggtttggac 2940 gatgatggac ggtgataatc agatggaata tccactcagc cccattattg acaacgcaaa 3000 gcccacattt agacaaataa tggcacattt cagtgacgca gctgaagcgt acattgaata 3060 cagaaatgcc acggaaaaat acatgccccg gtatggactt cagcgaaact taagagaatg 3120 cagcttagca cgttacgcat tcgactttta tgagatgaat tcaaagacgc cgatccgcgc 3180 gaaggaagct catatgcaga tgaaagcagc agcggttaga ggggtagcta accgtatgtt 3240 tggcttggat ggtaacataa gcaccgatga tgagaacaca gaacggcata cagcagcaga 3300 tgtgaataag gatcatcaca cgctgctcgg ccttcgtatg taacaaacat atatatattt 3360 aatatatagt gtcgtacatt atctttcgtt atatttgaat atgagcaaac gtagcgtggt 3420 tgaaccaccg tttgtggcat agtatatgat ataacttcgc tagcattatt tgcaccatga 3480 gacttagtgt ggtcatacca cgggaaccga gtcaagtgtt gtacgttttg ttagggagac 3540 //