ID AJ853858; SV 1; linear; genomic DNA; STD; VRL; 7924 BP. XX AC AJ853858; XX DT 02-NOV-2004 (Rel. 81, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Carnation etched ring virus, complete genome, Indian isolate XX KW aphid transmission protein; coat protein; complete genome; KW DNA-binding protein; inclusion body matrix protein; movement protein; KW polyprotein. XX OS Carnation etched ring virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-7924 RA Raikhy G.; RT ; RL Submitted (01-NOV-2004) to the INSDC. RL Raikhy G., Plant Virus Lab, Floriculture Division, Institute of Himalayan RL Bioresource Tech., PO Box # 6, Palampur, Distt. Kangra, Himachal Pradesh RL 176 061, INDIA. XX RN [2] RA Raikhy G., Hallan V., Kulshrestha S., Verma R.R., Zaidi A.A.; RT "Complete sequence of an Indian isolate of Carnation etched ring virus and RT variability studies among Caulimoviurses"; RL Unpublished. XX DR MD5; 39ffc51e601fe53031ee05394515ee13. DR EuropePMC; PMC5052798; 27716385. XX FH Key Location/Qualifiers FH FT source 1..7924 FT /organism="Carnation etched ring virus" FT /host="Dianthus caryophyllus" FT /lab_host="Dianthus barbatus" FT /isolate="Indian" FT /mol_type="genomic DNA" FT /country="India:Northern Himalayan region" FT /db_xref="taxon:10640" FT CDS 30..989 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q5ZF42" FT /protein_id="CAH68825.1" FT /translation="MNSSIEKQNSEIPEKENEEFTFQDNSQGFELEFSTNKKTLSKIQK FT ANLSLKTNDAFNISFLKAFSRKNHIYYHVNYKEFSVDICDTHGKNYLPLVTKSEIKKNL FT DKIRDEKVRSTISDIHFGAIKVLIKARFREGINSPIKMALIDDRITDRQDSILGAAHGN FT LVYGKFMFTVYPKYTTSILDQRLDRTLAFIHHFERNDLMRKGDKVFSITYLVAYALANS FT HHSIDYKEKDAIEIDDVFSEIGSVKSPTFTELDPEPNSWAIDIAQGKQPIGFKPKPIVS FT NNFLRFDKETSPSSSHQKSLEEISDKIDTLVVKLNNIS" FT CDS 986..1495 FT /product="aphid transmission protein" FT /db_xref="GOA:Q683L0" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/TrEMBL:Q683L0" FT /protein_id="CAH68826.1" FT /translation="MSLTTYPHIYKKEQILNLKPLNKLSNDRKFFFSSVKGTLPGIISH FT CNNINEILGRCYLGICKLNSFFGLSKDPSDKLSVSKSPSVYNLASKIFKEGGGNGDKHK FT EQVKLLEKIAQDQVILSKKIDELQTQVKELSSKIEPEPLTKEDIKKTYETLSRIESGLK FT GIIGIE" FT CDS 1492..1878 FT /product="DNA-binding protein" FT /db_xref="GOA:Q683K9" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/TrEMBL:Q683K9" FT /protein_id="CAH68827.1" FT /translation="MNLATIASEIEVVKTNQKTIESKIDQILAKIGSTPEESSNLESVA FT AKIISDLTKEMKECHCNKEIVEILNKDKAIIPSPERDSIQKKLSEPQYTFPNFDVGNEG FT MGSSTNPNALKWPPTEKPQPWPPR" FT CDS 1875..3356 FT /product="coat protein" FT /db_xref="GOA:Q5W1F2" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:Q5W1F2" FT /protein_id="CAH68828.1" FT /translation="MNREAILWKNINSIPEELTDKIIEVLSMEPNDKLRELDHNLILNK FT QISEQIPEWIIPDSLSELSSEIDLNFVLEEQEVNDNNSQPSLEEEVVSESDVESMRSFN FT IAMNRGEIGESSNKRPKREPDLFTSFGKIREDIGDKNPSLNILNLDCVNSPSDRKNKID FT KWAAELGLVFLTNPEAYTTAPNAARARLAYMEHKSLGIVNRFIKSTQWTQMNGDILLNV FT VSGLYTMFLGEDYTGNQEKTLEQERAKASLRLINLQLCDICSLQSFFCPYESNLYKLPQ FT NEYPSLVKQYLAKIPIVGEKASKRFEEEASAATSYSLGFAHKLVNEELAKICELSKKQK FT KLKRFNKNCCSTFEKPYEYGCKPSYSKKKKYSKKYKPKYTKYKVIREKKKFSPGKYFKP FT KDKKSEKAKYCPKGKKTCRCWVCNIEGHYANECPNRQTSEKFKLIQIAENYGLEPIENP FT YEDQQEICLLEQIQLSSSDSELDDTYEESSSEESE" FT CDS 3353..5323 FT /product="polyprotein" FT /note="contains: aspartic protease; endonuclease; reverse FT transcriptase" FT /db_xref="GOA:Q5W1F1" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q5W1F1" FT /protein_id="CAH68829.1" FT /translation="MSLRNRTNPNSIYVKGILKFPGYKQLELHCYVDTGSSLCMASKYV FT IPEEYWQTAEKPLNIKIANGKIIQLTKVCSKLPIRLGGERFLIPTLFQQESGIDLLLGN FT NFCQLYSPFIQYTDRIYFHLNKQSVIIGKITKAYQYGVKGFLESMKKKYKVNRPEPINI FT TSNQHLFLEEGGSNIEELCYEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELI FT DPKTIVEVKPMSYSPSDREEFDKQIKEPLDLKVIKPSKSPHMSPAFLVENEAERRRGKK FT RMVVNYKAMNKATKGDAHNLPNKDELLALVRGKKIYSSFDCKSGFWQVLLDKESQLLTA FT FTCPQGHYQWNVVPFGLKQAPSIFQRHMQTAFNQHSKYCCVYVDDILVFSNTEEEHYIH FT VLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDK FT KQLQRSLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPK FT LYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLA FT VFRVIYKFSIYLTPCRFLIRSDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEH FT IAGTKNVFADFLQENTLTNYV" FT CDS 5424..6914 FT /product="inclusion body matrix protein" FT /db_xref="GOA:Q5W1F0" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:Q5W1F0" FT /protein_id="CAH68830.1" FT /translation="MERHEQILKEIAFLELRLQSLKLELEFVGSSGSEQKGKIEPFRLN FT SECSATPEQTATGKESSNPLMAISSPKADKKHSKASEVPSPHKTVKEFSEIPKDFLRPN FT QGIQIPKKNEDHSSSSSKEEKGIQNPKKDFYVVYNGPYAGIYDHWGTAKKATNKIPGVS FT YKKFKDMLSARTSADIYTNAQFGEKLKYIPGATTSPKSFAEALTTRPSNMKSLGKPKFI FT KIEEDDDVGFNPEFDLKSFLYIYKYGRNLEEEHFLTDRAFTIDKKEISYLNFVNNSDPE FT GILESFKAGLVRFIYPSTNLQELRLLPKVPRSSVQRFRKKCIKDSEKEIFLKIKSTIPC FT WEDYHNGLDDLVSYRPNYLVQVGISKGVNYQPSQKMEATILREQWQNIAEDKAIEFFQA FT IEDILSNEKIFIIYSDDRILIYSSSPKERTKEDLMAILNFQSEVSSCKLLGFHSDKICS FT YLNKKASVGKPYSCPQKGKAVIASGPSFSVEDTLSDTG" XX SQ Sequence 7924 BP; 2930 A; 1463 C; 1439 G; 2092 T; 0 other; tggtatcaga gccatagtgc tcaaaaatca tgaattcctc tattgaaaaa cagaattctg 60 aaattcctga aaaggaaaat gaagagttta ctttccaaga taactctcaa ggatttgaat 120 tagagttttc taccaacaag aaaactttat ctaaaattca aaaagctaat ctcagcttaa 180 aaactaatga tgctttcaac attagtttcc ttaaggcatt cagccgaaaa aatcatatct 240 actaccacgt gaattataaa gaattctctg tagatatatg tgatacgcat ggcaaaaact 300 atttaccatt agtcactaaa tctgaaatca agaagaatct tgataaaata agggatgaga 360 aagtaaggtc cactatctca gatatccact tcggagctat taaagttcta ataaaagcga 420 gattccgaga agggataaat tctccgataa aaatggcgtt aatcgatgat agaatcaccg 480 accgtcaaga cagtattcta ggagccgcac atggaaacct agtctacggt aaatttatgt 540 tcaccgtcta ccctaagtat accacttcaa tcttagatca gaggttagac agaactctag 600 cgttcatcca tcactttgag cgcaacgatc tcatgagaaa aggagataag gtctttagca 660 ttacctacct agtagcttat gctttagcaa atagtcatca ctcgatagac tacaaagaaa 720 aagacgctat tgaaatagat gatgtctttt ctgaaatagg atctgttaaa agcccaacct 780 tcaccgagct tgacccagaa cctaattctt gggctataga catagcacaa ggaaaacaac 840 ccatagggtt taaaccaaaa cctatagtta gcaataactt tcttaggttt gataaggaga 900 caagtccatc ttcgtctcat caaaaatcac tagaagaaat tagtgataaa atagatacct 960 tggtagttaa gttaaacaat atatcatgag tttaactacc tatcctcata tctataagaa 1020 agagcaaatt cttaacctta agccgcttaa taagctctca aatgacagaa agttcttctt 1080 tagctctgtt aaaggaactt tacctggcat aataagccac tgcaacaata tcaatgagat 1140 attaggcaga tgttatttag gaatctgtaa gctaaattca ttctttggat taagcaaaga 1200 ccctagtgac aaattaagtg ttagtaaatc accgtcagtt tacaaccttg cttccaaaat 1260 ttttaaggag gggggaggaa atggtgacaa acacaaagaa caagtaaaac tacttgaaaa 1320 aattgctcaa gatcaggtca tcttaagcaa aaagattgat gaactccaaa cccaggttaa 1380 ggaactctct agtaaaatag aaccagaacc tctaaccaag gaagacatca agaaaaccta 1440 tgaaacctta tccaggatag aatccggcct aaaaggaatt ataggaatag aatgaatctg 1500 gccaccatcg cgtcagaaat cgaggttgtc aaaaccaacc aaaagactat agagtctaaa 1560 atagatcaaa ttctagctaa aataggatca actcctgaag aaagctcgaa tcttgagtct 1620 gttgcagcaa aaattatttc agatcttact aaagaaatga aagaatgcca ctgcaataaa 1680 gaaattgttg aaatcctcaa caaagacaaa gctatcattc catctccgga acgagacagc 1740 atacaaaaga aattgagtga acctcaatac acatttccta actttgacgt cggaaatgaa 1800 ggcatgggat cttcaactaa tcccaacgct ttaaaatggc caccaacaga gaaacctcaa 1860 ccatggccgc caagatgaat agagaagcta ttctctggaa aaacatcaac agtatccctg 1920 aggaactgac tgataaaatc attgaagttc tatctatgga accaaatgat aaattaagag 1980 aattagatca taatctaatc ctcaataaac aaatcagtga acaaatccca gaatggatta 2040 ttcctgattc tctttctgaa ttatcttcag aaattgatct aaactttgtt ctcgaagagc 2100 aagaagttaa cgacaacaac agtcaacctt cgctagaaga agaagttgtg tcagaaagcg 2160 acgtagaatc tatgagatcc ttcaacatag ccatgaatcg tggagaaatt ggagaatcat 2220 ctaataaacg tccaaaaaga gaaccagact tgtttacaag ttttggaaaa atcagagaag 2280 acataggtga caaaaatcct agtttaaaca ttctaaactt agattgtgtc aacagtcctt 2340 ctgataggaa aaataagata gacaaatggg ccgcagaact tggcttagtc tttcttacaa 2400 acccagaagc ctatactaca gctcctaatg cagccagagc tagactagct tacatggaac 2460 ataagagctt aggaatagtc aacaggttta ttaaaagtac ccagtggact caaatgaatg 2520 gagacatcct tttaaatgta gtcagcgggt tatataccat gttcttagga gaagattaca 2580 ctggtaatca agaaaaaacc ctagaacaag aaagggccaa ggctagcctt aggcttatca 2640 atttacaact ttgtgacatt tgctcacttc agtcattttt ctgtccctac gagtcaaatc 2700 tctataagtt accccaaaat gagtacccta gcctagtaaa acaataccta gctaagatac 2760 ccatagttgg agaaaaagcc tcaaaaaggt ttgaggaaga agctagtgca gcaactagtt 2820 acagtttagg attcgctcat aaactagtta acgaagagct cgcaaaaatc tgtgaattat 2880 ccaaaaagca gaaaaagtta aaaaggttta acaagaattg ttgttctacc tttgagaaac 2940 cttatgaata tggatgcaag ccatcttatt ctaagaagaa aaaatactct aaaaagtata 3000 aacctaaata caccaagtac aaggttatta gggaaaagaa gaaattttca ccaggaaaat 3060 acttcaaacc aaaggataag aaaagcgaaa aagctaagta ctgtcctaaa ggaaagaaaa 3120 catgccgatg ttgggtatgt aatatagaag gtcattatgc aaacgaatgt cctaacagac 3180 aaacgtctga aaaattcaag ctaattcaaa tagctgaaaa ctatggacta gaacccatag 3240 aaaaccctta cgaggatcaa caagaaatct gtcttctaga acagatacaa ctatcaagtt 3300 cagatagtga attggatgat acttatgaag aaagttcatc tgaagaatcg gaatgagtct 3360 tagaaatagg acaaacccca attccattta tgtcaaagga attctcaaat tccctggcta 3420 caaacaactc gagctacact gttatgtaga cactggctca agtttgtgta tggcaagtaa 3480 atatgtcata ccagaagaat attggcagac tgctgaaaaa cctctcaata ttaagatcgc 3540 caatggcaag atcatacaat tgacaaaggt ttgtagcaaa ctaccaatac gtttgggagg 3600 agaacgattt ctcattccaa cattattcca acaggaaagt ggaatagatt tattgcttgg 3660 aaacaatttc tgtcagttat actcaccctt catccagtat actgatcgaa tttactttca 3720 tcttaacaag caaagcgtta tcataggaaa gataacaaaa gcataccaat atggtgtcaa 3780 aggattcctt gaatccatga aaaagaagta taaagttaat aggcctgaac caattaacat 3840 cacttcaaac caacatctct ttttagaaga gggggggagt aatatagaag aactatgtta 3900 cgaaatacaa attagcaaat tttcagccat tgaagaaatg ctagaaagag ttagttcaga 3960 aaatcctata gacccagaaa agtctaagca atggatgaca gcaaccatag aactcataga 4020 ccctaagacc atagttgagg ttaaacccat gagctatagt cctagtgata gagaagaatt 4080 tgacaaacag atcaaagaac ctctagatct aaaggttatc aaacctagca aatcacccca 4140 tatgtcccca gccttccttg ttgagaatga agcagagaga cgtagaggta aaaagagaat 4200 ggtcgtcaac tacaaggcta tgaataaagc cacaaaagga gacgctcata atcttccaaa 4260 caaggatgaa ttactcgccc ttgtaagagg aaagaagatt tacagctcat ttgactgtaa 4320 gtcaggattc tggcaagtat tgctagataa agaatcgcag cttctaaccg cgtttacgtg 4380 tcctcaaggt cactaccaat ggaacgtagt accatttggg ttaaagcaag caccaagcat 4440 ctttcaaaga cacatgcaaa cagcatttaa ccaacactcc aaatattgtt gtgtctatgt 4500 agatgacatc ctagtgttta gtaacacaga agaagaacat tacattcatg ttcttaacat 4560 tttgagaaga tgtgaaaaac ttggaataat actttccaaa aagaaagcac aactcttcaa 4620 agaaaagatt aatttcctag gattagaaat tgatcaagga acccattgtc ctcaaaacca 4680 tatcttagaa catattcata agttcccaga taggatagaa gacaaaaagc agttgcagag 4740 atctctagga attctcacat acgcatctga ttatattccg aagctagcct ctattaggaa 4800 acccttacag agtaagctta aagaagattc aacatggact tggaatgata ctgattctca 4860 gtatatggct aagatcaaaa agaatcttaa gagttttccg aagctctacc accctgaacc 4920 taacgacaaa ttggtaatcg aaaccgatgc atctgaagag ttctggggcg gaattctaaa 4980 ggctattcac aatagtcatg agtatatctg tcgatatgct tcaggcagtt tcaaagccgc 5040 cgaaagaaat taccatagca acgagaaaga gcttctcgca gttttcagag taatttataa 5100 attcagtatt tatctaaccc cttgcaggtt tttgattcgt tctgataata aaaacttcac 5160 ccatttcgtt aatataaact taaaaggtga tagaaaacaa ggtcgtctgg tacgatggca 5220 aatgtggtta tctcaatatg attttgatgt agaacatatt gcaggtacaa agaatgtttt 5280 tgcagatttt ctacaagaga atactctaac taattatgtt tagctttgca ggacattcag 5340 aggcattaaa ttgctatatt tagagcttaa tcgctcaaga taaacttgtt tatcagggct 5400 tgtttagcct cacaggtaca atcatggaac gtcatgaaca gatactaaaa gaaatagctt 5460 tcttagagct gagacttcag tccctaaaac tggagttaga atttgtagga tcctctggat 5520 ctgaacaaaa aggaaagatc gaacctttcc gcctaaacag cgaatgttcg gctactccgg 5580 agcaaacggc aaccggtaaa gagtcatcaa atccgttgat ggctatcagc tcgccaaaag 5640 ctgataagaa gcattctaag gcttcagagg ttcccagtcc tcacaaaact gttaaggaat 5700 tttctgaaat tccaaaggac tttttacgtc ctaaccaggg tattcaaatc cctaaaaaga 5760 atgaagatca ctcttcatct tcttcgaaag aagaaaaggg aattcaaaat cccaaaaaag 5820 acttttatgt tgtctacaat ggtccttatg caggtatcta tgatcattgg ggaacagcta 5880 aaaaagcaac aaataagata ccgggagtat cttataaaaa attcaaagat atgcttagtg 5940 caagaacttc agcagacatt tatacaaatg cccagtttgg agaaaaactc aagtatatcc 6000 caggagcaac tactagtcct aagagttttg cagaagcatt aactaccagg cctagtaata 6060 tgaagagttt aggaaaacct aaattcataa aaatagaaga agatgatgac gttggattca 6120 atccagaatt cgacttaaag agttttctat atatttacaa atacgggcga aatctggaag 6180 aagaacattt tctaacagat cgggccttta ccattgacaa aaaagaaatc tcgtatctta 6240 actttgtcaa caatagcgat ccagaaggaa ttttggaaag ctttaaagca ggattagtaa 6300 gatttattta cccaagtact aatcttcaag aactaaggtt actacccaag gttcccaggt 6360 cttcagtgca aagattcaga aagaagtgca ttaaagactc agaaaaggaa attttcctaa 6420 aaattaaaag cactatccct tgctgggaag actatcacaa tggtctggat gatttggtca 6480 gttatcgtcc aaattatcta gtgcaggttg gcataagcaa aggtgtcaac tatcaaccgt 6540 cgcaaaagat ggaagccaca attctcagag aacaatggca aaatattgca gaggacaaag 6600 caattgaatt ctttcaagca attgaagata tcctcagcaa tgaaaagatt tttatcatct 6660 atagtgatga tagaattcta atctattcaa gtagtccaaa agaaaggact aaagaagatt 6720 taatggcaat cctcaacttc caatcagaag ttagcagctg caagctttta ggattccata 6780 gcgataagat atgttcttat ctaaacaaaa aagcaagtgt cggcaaacca tacagctgtc 6840 cacaaaaagg aaaggctgta atagcaagcg gacccagctt ctcagtggaa gatactttat 6900 cagacactgg ataaatgaat ggaccctacc acgattaaag aggagcgtct gtctaaagta 6960 aagtagatgc gtctttaata attcatctac tttagacgtc atgcatgacg tttaacatgc 7020 aatgtatcca gatcctccct ggctatataa agggagttaa ctttcattgt taaggcatcg 7080 aaaaattttc aagtctatct ctcaagaaaa acttagaaaa cttctttgtc ttaagagtca 7140 tgtgtaacta acttaagagt ggtgtgagag tcattagtag gagcaagctc tatgtgttga 7200 gcctaagtcc ttgctctaag tttgtaatga gttatgtata attatttcat ataaataaga 7260 aatcatacag tttgctacaa tatctcattg cctgtgaacc tggagtccgt ataaggtgtc 7320 cataacccaa gggttagtac cgccgaggca ggaggccgtt tagggaaaac aggtggtgga 7380 acaatcaaac cttggattgg tcagacagga cagagagtgt ggcaaggtat tggatactgc 7440 ttataatatg aataatttat gcattaactt ttacattctg agctaaggtc tgaagctaac 7500 aatggagttg tgcgtctgaa aatgataact cacgtcacat atttaaaaat atttggtaaa 7560 accgaattta aaaagagaaa gtctatgcgt agatttcaag ctaaacccgc agggttaaac 7620 aaaaggcttt ctgcctatta tctagactgt cacttccaca gtcaagaaaa ctatgagtta 7680 gcgtgtaatg aacgcattaa ctaatatagt cttaattgac atgaatatgc aggagtgctc 7740 tcactcttgt ttatcttctc ttaacgagat atttaaaaga caacgttcac attttcatga 7800 gcgttgcaaa gacttccgct gtgagaaaga atttctcata ttaaaagatg ctgtttccgc 7860 catcgcagct ctttcagaga gatcaaaaat tgatctttca aatcatcaag ggaccacccg 7920 taac 7924 //