ID   AJ831805; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   AJ831805;
XX
DT   20-SEP-2004 (Rel. 81, Created)
DT   01-APR-2008 (Rel. 95, Last updated, Version 3)
XX
DE   Turnip mosaic virus partial gene for polyprotein, genomic RNA, isolate JS
XX
KW   HC protein; polyprotein.
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Zhou X.;
RT   ;
RL   Submitted (15-SEP-2004) to the INSDC.
RL   Zhou X., Zhejiang University, Institute of Biotechnology, Kaixuan Road 268,
RL   Hangzhou, Zhejiang, 310029, CHINA.
XX
RN   [2]
RX   PUBMED; 18459837.
RA   Shi M., Li H.Y., Schubert J., Zhou X.;
RT   "Sequence analysis of CP and HC-Pro genes of Turnip mosaic virus isolates
RT   from China";
RL   Acta Virol. 52(1):59-62(2008).
XX
DR   MD5; d29d5c031ee4562aa19c7be2dff7e6ff.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Turnip mosaic virus"
FT                   /host="Brassica chinensis"
FT                   /isolate="JS"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..>1374
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:Q659N4"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q659N4"
FT                   /protein_id="CAH55689.1"
FT                   /translation="SAAGANFWKGFDRCFLAYRSDNREHTCYSGLDVTECGEVAALMCL
FT                   AMFPCGKITCPDCVTDSELSQGQASGPSMKHRLTQLRDVIKSSYPRFKHAVQILDRYEQ
FT                   SLSSANENYQDFAEIQSISDGVEKAAFPHVNKLNAILIKGATATGEEFSQATKHLLEIA
FT                   RYLKNRTENIEKGSLKSFRNKISQKAHINPTLMCDNQLDRNGNFIWGERGYHAKRFFSN
FT                   YFEIIDPKKGYTQYETRVVPNGSRKLAIGKLIVPTNFEVLREQMKGEPIESYPVTVECV
FT                   SKLQGDFVHACCCVTTESGDPVLSEIKMPTKHHLVIGNSGDPKYIDLPEIEENKMYIAK
FT                   EGYCYINIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDV
FT                   ANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
FT                   "
FT   mat_peptide     <1..>1374
FT                   /product="HC protein"
XX
SQ   Sequence 1374 BP; 442 A; 299 C; 329 G; 304 T; 0 other;
     agtgcagcag gagccaactt ctggaaaggc ttcgacagat gctttctcgc ataccgtagt        60
     gacaatcgcg agcatacatg ctattcaggg ctagatgtta ctgagtgcgg cgaggtggca       120
     gcactgatgt gtttggctat gttcccatgc ggaaagataa cctgccctga ctgtgtgaca       180
     gatagtgagc tgtcccaagg acaagcaagc ggaccatcta tgaagcacag gttgacgcag       240
     ctacgcgatg tcatcaagtc aagctaccca cgcttcaagc atgcagtgca gatactagat       300
     aggtatgagc aatcactgag cagtgcaaac gagaattacc aagatttcgc agagatccag       360
     agtataagtg atggagttga gaaagctgca ttcccacacg tcaataagct aaacgcaata       420
     ttgatcaaag gagccacagc gacaggggag gaattctcgc aggctacgaa gcatttgctc       480
     gagatagcac gatacctgaa gaacagaact gagaacattg agaagggttc actgaagtcc       540
     tttcgcaaca agatttccca gaaagcgcac atcaacccaa cactaatgtg cgataaccag       600
     ctcgatagga atggaaactt catatggggt gagagaggat accatgcaaa acgattcttc       660
     agcaactact ttgaaataat cgatccaaag aaaggctaca cccaatacga gacaagagtg       720
     gtaccaaatg ggtcacggaa acttgcaatc ggtaaactaa tagtcccaac gaacttcgaa       780
     gttctaaggg aacagatgaa aggcgaaccg atagagtcat acccagtaac agtcgaatgt       840
     gtgagcaagt tacagggtga cttcgtccat gcatgttgtt gtgtcacaac agaatcaggc       900
     gacccagtct tgtctgaaat taaaatgcca accaaacacc acctagtgat tggcaacagc       960
     ggcgatccaa agtacataga tctccctgag atcgaggaga ataagatgta catagcgaaa      1020
     gaaggttatt gttacatcaa catcttccta gctatgttgg taaatgtcaa ggagtcgcag      1080
     gctaaggagt tcacgaaagt tgttagggac aaactagtcg gcgaacttgg caagtggccc      1140
     actctactag atgtagcaac cgcttgttat ttcctgaaag tattttaccc agacgttgct      1200
     aacgccgaat tgccacgcat gttagtggat cataagacaa agataattca tgtcgttgat      1260
     tcatatgggt cactgtcaac tggatatcac gtccttaaga caaacactgt ggaacaactc      1320
     attaaattca cgagatgcaa tttggagtca agcttgaaac actaccgcgt cgga            1374
//