ID   AJ829767; SV 1; linear; genomic RNA; STD; VRL; 1831 BP.
XX
AC   AJ829767;
XX
DT   03-FEB-2005 (Rel. 82, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Cucumber mosaic virus partial MP gene for 3a protein and CP gene for coat
DE   protein, genomic RNA, isolate MAD01/1
XX
KW   3a protein; coat protein; CP gene; MP gene.
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-1831
RA   Fraile A.;
RT   ;
RL   Submitted (07-SEP-2004) to the INSDC.
RL   Fraile A., Biotecnologia, Universidad Politecnica de Madrid,
RL   E.T.S.Ingenieros Agronomos, Ciudad Universitaria, 28040-Madrid, SPAIN.
XX
RN   [2]
RX   DOI; 10.1016/j.virol.2004.11.017.
RX   PUBMED; 15661167.
RA   Bonnet J., Fraile A., Sacristan S., Malpica J.M., Garcia-Arenal F.;
RT   "Role of recombination in the evolution of natural populations of Cucumber
RT   mosaic virus, a tripartite RNA plant virus";
RL   Virology 332(1):359-368(2005).
XX
DR   MD5; 4e057b74bb60e47faee73daf0ce45c12.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1831
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="3"
FT                   /host="Diplotaxis erucoides"
FT                   /isolate="MAD01/1"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain:Madrid"
FT                   /db_xref="taxon:12305"
FT   CDS             <1..786
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q5GPK6"
FT                   /protein_id="CAH25516.1"
FT                   /translation="SDDLQKILFSPEAIKKMATECDLGRHHWMRADNAISVRPLVPEVT
FT                   HGRIASFFKSGYDVGELCSKGYMSIPQVLCAVTRTVSTDAEGSLRIYLADLGDKELSPI
FT                   DGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIERHGYIGYTGTTASVCSNW
FT                   QARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLKSQLNNIESSQYLLTNAKI
FT                   NQNARSESEDLNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1084..1740
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q76U37"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q76U37"
FT                   /protein_id="CAH25517.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 1831 BP; 439 A; 424 C; 426 G; 542 T; 0 other;
     tctgacgatc ttcaaaagat attatttagc cctgaagcca ttaagaaaat ggctactgag        60
     tgtgacctag gccggcatca ttggatgcgt gctgataatg ctatttcagt ccggcccctc       120
     gttcccgaag taacccacgg tcgtattgct tccttcttta agtctggata tgatgttggt       180
     gaattatgct caaaaggata catgagtatc cctcaagtgt tatgtgctgt tactcgaaca       240
     gtttccactg atgctgaagg gtctttgaga atttacttag ctgatctagg cgacaaggag       300
     ttatctccca tagatgggca atgcgtttcg ttacataacc atgatcttcc cgctttggtg       360
     tctttccaac cgacgtatga ttgtcctatg gaaacagttg ggaatcgtaa gcggtgtttt       420
     gctgtcgtta tcgaaagaca tggttacatt gggtataccg gtaccacagc tagcgtgtgt       480
     agtaattggc aagcaaggtt ttcatctaag aataacaact acactcatat cgcagctggg       540
     aagactctag tgctgccttt caacagatta gctgagcaaa caaaaccgtc agctgttgct       600
     cgcctgttga agtcgcaatt gaacaacatt gaatcttcgc aatatttgtt aacgaatgcg       660
     aagattaatc aaaatgcgcg cagtgagtcc gaggatttaa atgttgagag ccctcccgcc       720
     gcaatcggga gttcttccgc gtcccgctcc gaagccttca gaccgcaggt ggttaacggt       780
     ctttagcact ttggtgcgta ttagtatata agtatttgtg agtctgtaca taatactata       840
     tctatagtgt cctgtgtgag ttgatacagt agacatctgt gacgcgatgc cgtgttgaga       900
     agggaacaca tctggtttta gtaagcctac atcatagttt tgaggttcaa ttcctcttac       960
     tccctgttga gccccttact ttctcatgga tgcttctccg cgagattgcg ttattgtcta      1020
     ctgactatat agagagtgtt tgtgctgtgt tttctctttt gtgtcgtaga attgagtcga      1080
     gtcatggaca aatctgaatc aaccagtgct ggtcgtaatc gtcgacgtcg tccgcgtcgt      1140
     ggttcccgct ccgccccctc ctccgcggat gctaacttta gagtcttgtc gcagcagctt      1200
     tcgcgactta ataagacgtt agcagctggt cgtccaacta ttaaccaccc aacctttgta      1260
     gggagtgaac gctgtagacc tgggtacacg ttcacatcta ttaccctaaa gccaccaaaa      1320
     atagaccgtg ggtcttatta cggtaaaagg ttgttactac ctgattcagt cacggaatat      1380
     gataagaagc ttgtttcgcg cattcaaatt cgagttaatc ctttgccgaa atttgattct      1440
     accgtgtggg tgacagtccg taaagttcct gcctcctcgg acttatccgt tgccgccatc      1500
     tctgctatgt tcgcggacgg agcctcaccg gtactggttt atcagtatgc cgcatctgga      1560
     gtccaagcca acaacaaact gttgtatgat ctttcggcga tgcgcgctga tataggtgac      1620
     atgagaaagt acgccgtcct cgtgtattca aaagacgatg cgctagagac ggacgagcta      1680
     gtacttcatg ttgacatcga gcaccaacgc attcccactt ctggagtgct cccagtctga      1740
     ttccgtgttc ccagaatcct ccctccgatc tctgtggcgg gagctgagtt ggcagttctg      1800
     ctataaactg tctgaagtca ctaaacgttt t                                     1831
//