ID AJ812277; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AJ812277; XX DT 07-JUN-2006 (Rel. 88, Created) DT 07-JUN-2006 (Rel. 88, Last updated, Version 1) XX DE Tomato yellow leaf curl virus complete genome, isolate Mersin 1 XX KW C2 gene; C3 gene; C4 gene; coat protein; complete genome; precoat protein; KW Rep gene; replication enhancer protein; replication-associated protein; KW transcriptonal activator protein; V1 gene; V2 gene. XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Koklu G.; RT ; RL Submitted (31-AUG-2004) to the INSDC. RL Koklu G., Plant Protection, Trakya University Tekirdag Fac of Agric, 59030, RL Tekirdag, TURKEY. XX RN [2] RA Koklu G., Rojas A., Kvarnheden A.; RT "Molecular identification and the complete nucleotide sequence of a Tomato RT yellow leaf curl virus isolate from Turkey"; RL J. Plant Pathol. 88(1):61-66(2006). XX RN [3] RA Koklu G., Kvarnheden A.; RT "Molecular comparison of Tomato yellow leaf curl virus from Turkey to other RT Old World Begomoviruses"; RL Unpublished. XX DR MD5; b7673fde8a71847c9c15f171118e88c7. DR EuropePMC; PMC2224568; 17977971. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus" FT /host="Lycopersicon esculentum" FT /isolate="Mersin 1" FT /mol_type="genomic DNA" FT /country="Turkey:Mersin" FT /isolation_source="Lycopersicon esculentum" FT /db_xref="taxon:10832" FT misc_feature 1..313 FT /note="intergenic region" FT CDS 314..664 FT /gene="V2" FT /product="precoat protein" FT /function="movement" FT /db_xref="GOA:Q77PF9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77PF9" FT /protein_id="CAH23277.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 474..1250 FT /gene="V1" FT /product="coat protein" FT /function="coat protein" FT /db_xref="GOA:Q1ENC1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q1ENC1" FT /protein_id="CAH23278.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNVFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1247..1651) FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:Q1ENC0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q1ENC0" FT /protein_id="CAH23279.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVIGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDRLGVISINN FT VIRAIDHVLYDVIENTINVTETHDIKYKFY" FT CDS complement(1392..1799) FT /gene="C2" FT /product="transcriptonal activator protein" FT /db_xref="GOA:Q1ENB9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q1ENB9" FT /protein_id="CAH23280.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQ FT HQEGYWDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1708..2781) FT /gene="Rep" FT /product="replication-associated protein" FT /db_xref="GOA:Q1ENB8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q1ENB8" FT /protein_id="CAH23281.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVC FT RELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPSSSYREHLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT CDS complement(2337..2630) FT /gene="C4" FT /product="C4 protein" FT /function="determinant of symptom expression" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q1ENB7" FT /protein_id="CAH23282.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIRTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 752 A; 533 C; 612 G; 884 T; 0 other; gttgaaatga atcggtgtcc ctcaaagctc tatggcaatc ggtgtatcgg tgtcttactt 60 atacctggac acctaatggc tatttggtaa tttcgtaaaa gtacattgca attcaaaatt 120 caaaattcaa aaatcaaatc attaaagcgg ccatccgtat aatattaccg gatggccgcg 180 cctttttctt ttgtgtggtc cccacgaggg ttacacagac gtcactgtca accaatcaaa 240 ttgcatcctc aaacgttaga taagtgttca tttgtcttta tatacttggt ccccaagtat 300 tttgtcttgc aatatgtggg accctcttct aaatgaattt cctgaatctg ttcacggatt 360 tcgttgtatg ttagctatta aatatttgca gtccgttgag gaaacttacg agcccaatac 420 attgggccac gatttaatta gggatcttat atctgttgta agggcccgtg actatgtcga 480 agcgacccgg cgatataatc atttccacgc ccgtctcgaa ggttcgccga aggctgaact 540 tcgacagccc atacagcagc cgtgctgctg tccccattgt ccaaggcaca aacaagcgac 600 gatcatggac gtacaggccc atgtaccgaa agcccagaat atacagaatg tatcgaagcc 660 ctgatgttcc ccgtggatgt gaaggcccat gtaaagtcca gtcttatgag caacgggatg 720 atattaagca cactggtgtt gttcgttgtg ttagtgatgt tactcgtgga tctggaatta 780 ctcacagagt gggtaagagg ttttgtgtta aatcgatata ttttttaggt aaagtctgga 840 tggatgaaaa tatcaagaag cagaatcaca ctaatcaggt catgttcttc ttggtccgtg 900 atagaaggcc ttatggaagt agtccaatgg attttggaca ggtttttaat gtgttcgata 960 atgagcccag taccgcaacc gtgaagaatg atttgcggga taggtttcaa gtgatgagga 1020 aatttcatgc tacagttatt ggtgggccct ctggaatgaa ggaacaggca ttagttaaga 1080 gattttttaa aattaacagt catgtaactt ataatcatca ggaggcagcc aagtatgaga 1140 accatactga aaacgccttg ttgttgtata tggcatgtac gcatgcctct aatccagtgt 1200 atgcaactat gaaaatacgc atttatttct atgattcaat atcaaattaa taaaatttat 1260 attttatatc atgagtttct gttacattta ttgtgttttc aattacatca tacaatacat 1320 gatcaattgc tctgattaca ttgttaattg aaattacacc aagtctatct aaatacttaa 1380 gaacttgata tctaaatact cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa 1440 ttcggaagtt gagaaaacat ttgtgaatcc caataacctt cctgatgttg tggttgaatc 1500 ttatctgaat ggaaatgatg tcgtggttca ttagaaatgg ccgctggctg tgttctgtta 1560 tcttgaaata gaggggattg tttatctccc agataaaaac gccattctct gcctgaggag 1620 cagtgatgag ttcccctgtg cgtgaatcca tgattgttgc agttgatgtg gaggtagtat 1680 gagcagccac agtctaggtc tacacgctta cgccttattg gtttcttctt ggctatcttg 1740 tgttggacct tgattgatac ttgcgaacag tggctcgtag agggtgacga aggttgcatt 1800 cttgagagcc caatttttca aggatatgtt tttttcttcg tctagatgtt ccctatatga 1860 ggagctaggt cctggattgc agaggaagat agtgggaatt ccccctttaa tttgaatggg 1920 cttcccgtac tttgtgttgc tttgccagtc cctctgggcc cccatgaatt ccttgaagtg 1980 ctttaaataa tgcgggtcta cgtcatcaat gacgttgtac cacgcatcat tactgtacac 2040 ctttgggctt aggtctaaat gtccacataa ataattatgt gggcctagag acctggccca 2100 cattgttttg cctgttctgc tatcaccctc aatgacaata cttatgggtc tccacggccg 2160 cgcagcggaa gacacgacgt tctcggcgac ccactcttca agttcatctg gaacttgatt 2220 aaaagaagaa gaaagaaatg gagaaacata aacttctaaa ggaggactaa aaatcctatc 2280 taaatttgaa cttaaattat gaaattgtaa aatatagtcc tttggggcct tctcttttaa 2340 tatattgagg gcctcggatt tactgcctga attgagtgct tcggcatatg cgtcgttggc 2400 agattgctga cctcctctag ctgatctgcc atcgatttgg aaaactccaa aatcaatgaa 2460 gtctccgtct ttctccacgt aggtcttgac atctgttgag ctcttagctg cctgaatgtt 2520 cggatggaaa tgtgctgacc tgtttgggga taccaggtcg aagaaccgtt ggttcttaca 2580 ttggtatttg ccttcgaatt ggataagcac atggagatgt ggttccccat tctcgtggag 2640 ttctctgcaa actttgatgt attttttatt tgttggggtt tctaggtttt ttaattggga 2700 aagtgcttcc tctttagaga gagaacaatt gggatatgtt aggaaataat ttttggcata 2760 tattttaaat aaacgaggca t 2781 //