ID AJ811998; SV 1; linear; genomic RNA; STD; VRL; 4005 BP. XX AC AJ811998; XX DT 08-SEP-2004 (Rel. 81, Created) DT 08-SEP-2004 (Rel. 81, Last updated, Version 1) XX DE Carnation mottle virus complete genome, isolate Indian XX KW coat protein; complete genome; CP gene; gp1 gene; gp2 gene; gp3 gene; KW movement protein P7; movement protein P9; p7 gene; p9 gene; KW polymerase associated protein; polymerase associated protein GP1; KW polymerase associated protein GP2; polymerase associated protein GP3. XX OS Carnation mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4005 RA Raikhy G.; RT ; RL Submitted (27-AUG-2004) to the INSDC. RL Raikhy G., Floriculture Division, Institute of Himalayan Bioresource Tech., RL PO Box # 6, Palampur, Distt. Kangra, Himachal Pradesh, INDIA. XX RN [2] RA Raikhy G., Hallan V., Kulshrestha S., Verma R.R., Zaidi A.A.; RT "Complete nucleotide sequence of an Indian isolate of Carnation mottle RT virus"; RL Unpublished. XX DR MD5; bc881a38cd809fe21b43d3a619d77690. DR EuropePMC; PMC4432326; 25977420. XX FH Key Location/Qualifiers FH FT source 1..4005 FT /organism="Carnation mottle virus" FT /host="Dianthus caryophyllus (clove pink)" FT /lab_host="Dianthus barbatus" FT /isolate="Indian" FT /mol_type="genomic RNA" FT /country="India:Northern Himalayan Region, Palampur" FT /db_xref="taxon:11986" FT CDS 69..806 FT /gene="gp3" FT /product="polymerase associated protein GP3" FT /db_xref="GOA:Q683S9" FT /db_xref="UniProtKB/TrEMBL:Q683S9" FT /protein_id="CAH25506.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GVRRIVSSGGKCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFIRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGRKIAMASILNRKGWCWRLMVNPLDR FT ARWWEAWCVVNGFDSNKPVTFPK" FT CDS 69..2363 FT /transl_except=(pos:804..806,aa:OTHER) FT /gene="gp2" FT /product="polymerase associated protein GP2" FT /db_xref="GOA:Q683S8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q683S8" FT /protein_id="CAH25507.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GVRRIVSSGGKCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFIRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGRKIAMASILNRKGWCWRLMVNPLDR FT ARWWEAWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKEQVSCPQPEPGSFNVTGNLRRR FT FHRVCGNHSRNSANDLVDCYQGRKRTIYDENAAASLLDRAIERKDGDLKTFIKAEKFNV FT NLKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHI FT WSAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGV FT GFASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERT FT DIDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKD FT SHSLVHWNNEKNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVKENKNITEKSS FT SGFFMMADRAKRGYSAVSEVCRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAA FT DSLWILNRKYQ" FT CDS 69..2681 FT /transl_except=(pos:804..806,aa:OTHER) FT /transl_except=(pos:2361..2363,aa:OTHER) FT /gene="gp1" FT /product="polymerase associated protein GP1" FT /db_xref="GOA:Q683S7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q683S7" FT /protein_id="CAH25508.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GVRRIVSSGGKCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFIRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGRKIAMASILNRKGWCWRLMVNPLDR FT ARWWEAWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKEQVSCPQPEPGSFNVTGNLRRR FT FHRVCGNHSRNSANDLVDCYQGRKRTIYDENAAASLLDRAIERKDGDLKTFIKAEKFNV FT NLKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHI FT WSAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGV FT GFASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERT FT DIDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKD FT SHSLVHWNNEKNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVKENKNITEKSS FT SGFFMMADRAKRGYSAVSEVCRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAA FT DSLWILNRKYQXLESKCSLGIEENKRRVDRWPRMPSVNLHLIVLTGVFGLMLLIRLRCT FT FTSTFSLPPLVTLNQIIALSFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK" FT CDS 2336..2521 FT /gene="p7" FT /product="movement protein P7" FT /db_xref="GOA:Q683S6" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:Q683S6" FT /protein_id="CAH25509.1" FT /translation="MDIEPEVPVAGKQMLAGNRGKQKTRRSVAKDAIRKPASDSTNGGI FT WVNVADKIEVHIHFNF" FT CDS 2427..2681 FT /gene="p9" FT /product="movement protein P9" FT /db_xref="GOA:Q683S5" FT /db_xref="UniProtKB/TrEMBL:Q683S5" FT /protein_id="CAH25510.1" FT /translation="MPSVNLHLIVLTGVFGLMLLIRLRCTFTSTFSLPPLVTLNQIIAL FT SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK" FT CDS 2671..3717 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q683S4" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q683S4" FT /protein_id="CAH25511.1" FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKYLTMSKTELLSTVKGTTGVIPSF FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK FT WCIIVRGTVEGGFTKPTLVGPGISGDVDYESARPIAICELVTQMEGQILKITKTTAEQP FT LQWVVYRM" XX SQ Sequence 4005 BP; 1127 A; 872 C; 1094 G; 912 T; 0 other; gggtaagctg gcgggcaaac ctacctctat cttaattaca ttatatattc taaccatctg 60 ctttcactat gggattaccc agtctactag tggaaggcgt tattggatgc actctagtcg 120 gtggtttggt ggctgtgggt agcgcagcgc tggccgttcg ggcgaccatc ggtgttgtag 180 aattcaatag ggagtgtgtg cgcggggtga gaaggatcgt atctagcgga ggaaagtgct 240 taatagtcca atccccttat ggtaatccta accaaggatt gataaggggt gaagacgaag 300 aaattgacaa tgtggaggag tcaacaccgg aggaattgac tcagttgatt gaggttaagg 360 cggaagtgga tgggaaagag gtcgtcgtct ccaagaagcg tgtagtaaac aggcacttga 420 gacaacgatt cattcgctcc atagccatcg aagccaaaaa tcactttggt ggtgacatca 480 gccctagcaa ggccaactac ctttccgttt ccaagtttct gacggggaaa tgcaaggaga 540 gacatgttgt gcccgctcac actagagatt gtgtgagtgc tgctatggtg ctggtattca 600 cccccgacgt ccacgagatc aggatgatgg caggattggc gtccgacgca gcgtacggaa 660 gaaagatcgc aatggcgagc atactgaaca ggaaagggtg gtgttggagg ttaatggtaa 720 atccattgga tagggcaaga tggtgggaag cgtggtgcgt tgtaaacggg tttgactcca 780 acaaacccgt cacctttccc aaataggggg gcctgttcta cctcaatggt gtggagacga 840 agattcgtcg tggaggccac ccatcagtga ttgaggtaga cgggcaatgt cctcccagag 900 agagaaaact ctacgtacag aatgccataa ccactggtta tgaatacagg gtccacaacc 960 attcgtacgc aaacctcaga cgagggctcc ttgagagagt tttctatgtt gagcgcaaca 1020 aggagcaagt cagctgtccg caacctgaac ccggcagctt taatgtgacg ggaaacctgc 1080 gacgcaggtt ccatagagtg tgtggtaatc attcccggaa ctctgccaac gatttggtag 1140 attgttacca gggcaggaaa cgcacaatct atgatgagaa tgcagcggcg tctctacttg 1200 atagagctat cgaaaggaag gatggcgatc tcaaaacctt tatcaaggcg gagaaattca 1260 acgtaaatct gaaaagtgat cctgctcctc gggttataca acctaggagc cctcgctaca 1320 acgtggagtt gggccggtac ttaaagaagt atgaacacca tgcttacaaa gccttagaca 1380 agatctgggg aggaccaaca gtcatgaaag gatacactac agaggaggta gcacagcaca 1440 tttggagcgc atggaatcaa ttccagacac ctgtagccat aggatttgac atgtcaagat 1500 tcgatcagca tgtgtctgta gccgcgctcg agttcgaaca ttcatgctat ttggcctgtt 1560 ttgaagggga cgctcatctc gccaacttgc ttaagatgca actggtgaat catggcgtgg 1620 gttttgctag caatggaatg ttgcgataca caaaggaagg gtgcagaatg agcggtgaca 1680 tgaacactgc cttgggcaac tgtttgttag cttgccttat caccaaacac ttaatgaaaa 1740 tcaggagcag actgatcaac aatggggatg actgcgtgct tatttgcgaa agaacagaca 1800 tcgactacgt cgtgagtaat ttaacgacgg gatggagtcg atttggattc aattgcatag 1860 cagaagagcc agtgtacgaa atggaaaaga tcaggttctg ccagatggca ccggtgtttg 1920 atggagcagg ttggctgatg gtcagggacc ccttggtgag catgagcaag gattctcact 1980 ccttagtgca ttggaacaac gaaaagaatg caaaacaatg gctgaagtca gtaggaatgt 2040 gcggtctgcg gattgccggg ggggttccag ttgtgcaaga gttctaccag aaatacgttg 2100 aaacagccgg gaatgtgaaa gagaacaaaa atatcacaga gaagagtagt tctgggttct 2160 ttatgatggc ggatcgcgct aagcggggct attctgctgt gtctgaggtg tgccgattta 2220 gcttctacca ggcattcggc atcacgccag accagcagat cgcgttggag ggggagatca 2280 ggtctctcac tatcaacacc aacgtggggc cccagtgtga agcggcagat tcactatgga 2340 tattgaaccg gaagtaccag tagctggaaa gcaaatgctc gctgggaata gaggaaaaca 2400 aaagacgcgt agatcggtgg ccaaggatgc catccgtaaa cctgcatctg atagtactaa 2460 cgggggtatt tgggttaatg ttgctgataa gattgaggtg cacattcact tcaactttta 2520 gtttgccccc actggtaact ctaaatcaga taatagcgtt gtcattttgt ggtcttctat 2580 taaacagcat ctctcgggca gaaagagctt gctattacaa ctactctgtt gatagttcca 2640 aacaacaaca catttcgata agtacaccaa atggaaaata aaggagaaaa gatcgcgatg 2700 aatcccactg tgcaaacatt ggcgcagaag ggggacaagt tagccgtgaa gttggtgaca 2760 agagggtggg cctctctgag tacgaaccag aagaggagag ctgaaatgct tgctggatac 2820 actccagcga tcctagcctt cacaccccga cgaccacgga tgacgaaccc tcctccaaga 2880 accagtagga attcaccagg acaagctgga aagtacctga cgatgagtaa gaccgaacta 2940 ctaagcaccg tcaaaggtac cacgggtgtt atcccaagct ttgaagactg ggtcgtttcc 3000 ccccgaaacg tagccgtctt cccacaactc tcgctgctgg cgacgaactt caacaagtac 3060 cgcattactg cgctcactgt gaagtactca cccgcgtgca gcttcgagac caatgggagg 3120 gtggctctgg gattcaacga tgacgcttcg gacacaccgc caaccaccaa ggttggattt 3180 tacgatctgg gcaaacatgt ggaaactgct gcacagacag ctaaggatct agtgatacca 3240 gtagacggca aaacccggtt catcagggac tcggctagtg atgatgccaa actagtcgat 3300 tttggacgaa tagtcttgtc aacatacggg tttgacaagg ctgacactgt ggtgggcgaa 3360 ttgttcatac agtacacgat tgtgctgagt gacccaacca agacggccaa aatttcacag 3420 gcaagcaacg ataaggtgtc ggacggacca acgtatgtgg tcccttcggt taatggcaac 3480 gagctacagc taagagtggt agccgctggg aaatggtgca ttatagtgcg gggtacggtt 3540 gagggaggct tcaccaaacc cacacttgtt ggaccgggaa tcagcggtga tgtggactat 3600 gaaagtgcca gacctatcgc catttgtgaa ttggtgacac aaatggaggg ccagatattg 3660 aaaatcacca agaccacagc agaacaacca ctccaatggg ttgtttatag gatgtgaacg 3720 caatagaaaa gtttgttaga cacacacggc gggacgtgtt gccggagctg ccactccgcc 3780 caagatggat cgatattaac catctttggc aacagcgtgc gtgactaatc gaacctagta 3840 attgcatagc atccgactat aacctgttct ctgctggata cgagggtggc ctcgtgatcc 3900 caaaccataa aagaaaccaa cttgttggtg gaagggcttg gaagtaggat caaccactgt 3960 ttattaatta ggggtgagag tattcactgt actctttccc cgccc 4005 //