ID AJ810419; SV 1; linear; genomic RNA; STD; VRL; 2603 BP. XX AC AJ810419; XX DT 08-MAR-2005 (Rel. 83, Created) DT 30-JUL-2009 (Rel. 101, Last updated, Version 4) XX DE Barley yellow dwarf virus - PAV gene for polyprotein, isolate CAN-1, DE genomic RNA XX KW ORF1; RdRp gene; ribosomal slippage; RNA-dependent RNA polymerase. XX OS Barley yellow dwarf virus PAV OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-2603 RA Fomitcheva V.V.; RT ; RL Submitted (11-AUG-2004) to the INSDC. RL Fomitcheva V.V., Institute of Resistance Research, Federal Centre for RL Breeding Research, Theodor-Roemer-Weg 4, 06449 Aschersleben, GERMANY. XX RN [2] RX DOI; 10.1007/s10658-005-2082-2. RX AGRICOLA; IND43800875. RA Fomitcheva V.W., Schubert J., Rabenstein F., Habekuss A.; RT "Immunodetection of the replicative complex of Barley yellow dwarf RT virus-PAV in vivo"; RL Eur. J. Plant Pathol. 112(3):259-266(2005). XX DR MD5; 29d4421b1198b881518e8ecd218c8bb9. XX FH Key Location/Qualifiers FH FT source 1..2603 FT /organism="Barley yellow dwarf virus PAV" FT /host="barley" FT /isolate="CAN-1" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /country="Canada" FT /db_xref="taxon:2169986" FT CDS join(1..1017,1017..2603) FT /product="polyprotein" FT /note="ribosomal slippage" FT /db_xref="GOA:Q5CC77" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5CC77" FT /protein_id="CAH18868.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQTSKSGVTEAWTDF FT FVKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKEVKDEAKDNAKAAAKIGAEMFAPVNVQDLYSFTEVKKVETGLMKEVIKE FT KNGEGEKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLGIASKTYLKQVQTMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELAPALEHQITTNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYLKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQVVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENNSQNEY" FT mat_peptide 1..1017 FT /product="hypothetical protein" FT /note="ORF1" FT mat_peptide 1017..2600 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" XX SQ Sequence 2603 BP; 779 A; 599 C; 661 G; 564 T; 0 other; atgtttttcg aaatacttat aggagctagc gccaaggcgg tcaaagactt cataagccat 60 tgctactctc gtttgaaatc tatatactat tctttcaagc gatggctcat ggagatatcc 120 gggcaattca aggcccacga cgcctttgtc aacatgtgct ttggccacat ggctgacatt 180 gaggacttcg aggcggaact cgctgaggag ttcgccgaaa gggaggatga ggtggaggag 240 gccaggagcc tcttaaaact gctggtcgcc caaacatcta aatcaggggt gaccgaggct 300 tggaccgact tctttgtgaa gtcgagaggt ggtgtttatg caccgctttc ctgcgagcct 360 accaggcagg aattagaagt caagagcgag aagctcgaaa aactcctgga ggaacagcac 420 cagtttgagg tgcgtgcggc caagaagtac atcaaggaaa agggccgtgg cttcatcaac 480 tgctggaacg acctgaggag ccgcctcaga ctggtgaagg aagtaaaaga cgaggcgaag 540 gacaacgcca aagccgctgc caagatcgga gcggaaatgt ttgcccccgt caatgtccag 600 gacctctaca gtttcacaga ggtcaagaag gtggagaccg gcctcatgaa ggaggtcatc 660 aaagagaaga acggcgaagg agaaaaacac ctcgagccca ttttggaaga ggtgaggtcc 720 attaaggaca ccgccgaagc tagggacgct gcatccacct ggataacaga gacagtcaag 780 ttgaaaaact cgacactaaa cgctgatgaa ctgtctctcg ccaccatcgc ccgctacgtc 840 gaaaatgtag gggataaatt caaacttggc attgctagca agacatatct caagcaagtg 900 caaacgatgt ctgtaccaat tccgactaac aaggacatca aattgaagat ggtgctgcag 960 agtcctgagg cacgtgccag gcgggaacgc atggacgtgc ttgactctgt gggtttttag 1020 aggggctctg taccgcctct ggttttgaga gcccattccc tattctcggg ctgccagaga 1080 ttgcggtcac agacggagcc cggctccgta aggttagtag taatattaga taccttagcc 1140 aaacccacct aggtcttgta tataaggcac caaatgcctc cctgcacaat gcgcttgtag 1200 cagtggagag aagagttttt acagtaggaa agggggacaa agcaatctac cccccccgcc 1260 cagagcatga cattttcact gatacaatgg attacttcca aaaatccatt atagaagagg 1320 tgggatactg tagaacatat ccagcgcaac tcctggctaa cagctatagc gcaggaaaga 1380 gggccatgta tcacaaagcc attgcatcat tgaagacggt cccttatcat cagaaggatg 1440 ctaatgtgca agctttcctg aagaaggaaa aacattggat gaccaaggac atcgcccccc 1500 gattgatttg cccccgcagc aagcggtaca acatcatcct aggaactcgt ttgaaattca 1560 acgagaagaa gatcatgcac gctatcgata gtgtgttcgg atcccccact gtgctttctg 1620 gctatgacaa ctttaaacaa ggaaggatca tagccaagaa gtggcaaaag tttgcatgcc 1680 ccgtcgccat cggcgtggat gctagccgct ttgaccaaca tgtgtcagag caggcgctta 1740 agtgggaaca cgggatatac aatgggatct tcggagacag cgaactggct cctgcacttg 1800 aacaccaaat taccaccaac atcaagatgt ttgttgaaga taaaatgctt aggttcaagg 1860 taagaggcca cagaatgtcc ggtgacatta ataccagcat gggaaataag ctcataatgt 1920 gcggcatgat gcatgcatat ctcaagaagc tgggtgttga agctgaacta tgtaataacg 1980 gagacgactg tgtcatcatc actgatagag ccaatgagaa gctctttgat ggcatgtacg 2040 accatttcct ccagtatggc ttcaacatgg tgaccgaaaa accagtttac gaactggagc 2100 aattggagtt ttgccagtcg aaaccggtct ctattaatgg aaagtataga atggtcagaa 2160 ggcccgatag cataggcaaa gatagcacaa cactactgag catgctcaat caatccgacg 2220 tcaagagcta catgtcggct gttgctcagt gtggcctggt gctcaacgct ggagtaccca 2280 tacttgaaag cttctataaa tgcctatata gaagctcggg gtacaagaaa gtgagtgagg 2340 aatttattaa aaacgtcata tcgtatggaa cagatgagag actacaaggt agacgtacct 2400 ataatgaaac acctatcacc aaccacagta gaatgtccta ctgggaatca ttcggagttg 2460 accctaagat acagcaagtc gtcgagaggt actacgacgg tcttacggta agtgcccaac 2520 tccagagcgt gaaggtgacg actccacatc tgcaatcaat actgctttcc ataccggaga 2580 acaactcgca aaacgaatat taa 2603 //