ID AJ810418; SV 1; linear; genomic RNA; STD; VRL; 5674 BP. XX AC AJ810418; XX DT 08-MAR-2005 (Rel. 83, Created) DT 30-JUL-2009 (Rel. 101, Last updated, Version 4) XX DE Barley yellow dwarf virus - PAV complete genome, isolate ASL-1, genomic RNA XX KW ORF1; CP gene; MP gene; UF gene; RTD gene; RdRp gene; UF protein; KW coat protein; movement protein; ribosomal slippage; read through peptide; KW RNA-dependent RNA polymerase. XX OS Barley yellow dwarf virus-PAV OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; OC Tolivirales; Tombusviridae; Regressovirinae; Luteovirus; OC Luteovirus pavhordei. XX RN [1] RP 1-5674 RA Fomitcheva V.V.; RT ; RL Submitted (11-AUG-2004) to the INSDC. RL Fomitcheva V.V., Institute of Resistance Research, Federal Centre for RL Breeding Research, Theodor-Roemer-Weg 4, 06449 Aschersleben, GERMANY. XX RN [2] RA Fomitcheva V.W., Schubert J., Rabenstein F., Habekuss A.; RT "Immunodetection of the replicative complex of Barley yellow dwarf RT virus-PAV in vivo"; RL Eur. J. Plant Pathol. 112(3):259-266(2005). XX DR MD5; 1622ed429a2ab2134b855a3bd24c956e. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5674 FT /organism="Barley yellow dwarf virus-PAV" FT /isolate="ASL-1" FT /serotype="PAV" FT /mol_type="genomic RNA" FT /isolation_source="barley" FT /db_xref="taxon:2169986" FT CDS join(142..1158,1158..2744) FT /product="polyprotein" FT /note="ribosomal slippage" FT /db_xref="GOA:Q5CC81" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q5CC81" FT /protein_id="CAH18864.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQTSKSGVTEAWTDF FT FVKSRGGVYAPLSCEPTRQELEVKSEKLERLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVNVQDLYSFTEVKKVETGLMKEVIKE FT KNGEGEKHLEPILEEVRSIKDTAEARDAASTWITETVKLKNSTLNADELSLATIARYVE FT NVGDKFKLGIASKTYLKQVATMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFPILGLPEIAVTDGARLRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCKTYPAQLLANSYSA FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFQQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELAPALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYLKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNHSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSQNEY" FT mat_peptide 142..1157 FT /product="hypothetical protein" FT /note="ORF1" FT mat_peptide 1158..2741 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT CDS join(2858..3457,3461..4810) FT /product="polyprotein" FT /note="ribosomal slippage" FT /db_xref="GOA:Q5CC80" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q5CC80" FT /protein_id="CAH18865.1" FT /translation="MDSVGRRGPRRANQNGPRRRRRRAIRPVVVVQPNRAGPRRRNGRR FT EGRRGPDSIPGSAGRTEVFIFSVDNLKANSSGTIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTSGAIFVELDTACKQSALGSYINSFTISKTASKSFRAEAINGKDF FT QESTIDQFWLLYKANGTTTDTAGQFIIRINVSMLTPKVDSSPPEPKPAPEPTPTPQPTP FT APQPTPEPTPAPAPKRFFEYVGTPTGTISTRENSDSISVSKLGGQSMQYMENEKCETKV FT IDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNSS FT GDNWGVGNYRGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGND FT ACFYLMAPKTMITDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAKHITRHAETPIRS FT KHILVSERYVEPLPTITDQGLCDVKTPEQEQTLVDEEDRQTVSTEPDIALQEYEAATAE FT IPDAEEDVLPSKEQLSSKPLDTSGNIIPKSKEPEVLGTYQGQNIYPEDVPPMARQRLRE FT AAKAPSTLLYERTPKKSNNFLTRFMEANRSPTTPAAPTVSTTSNMTREQLAEYTRIRKS FT LGLTAAKEYKAQFQ" FT mat_peptide 2858..3457 FT /gene="CP" FT /product="coat protein" FT CDS 2901..3362 FT /gene="mp" FT /product="movement protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q5CC79" FT /protein_id="CAH18866.1" FT /translation="MAQEGGAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSYSQSTTLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPPL FT RRALSLLNSTPRASNQPWVATLIPSPSAKLPPNPSEPRQLMGRTSKNQR" FT mat_peptide 3461..4807 FT /gene="rtd" FT /product="read through peptide" FT CDS 4917..5108 FT /gene="UF" FT /product="UF protein" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q5CC78" FT /protein_id="CAH18867.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVMGCCRWCRSNPFPPSFSSVQAK FT DSRSVRETIKNIEGASAQ" XX SQ Sequence 5674 BP; 1658 A; 1373 C; 1388 G; 1255 T; 0 other; agtgaagatt gaccatctca caaaagctgt tacgtgcttg taacacacta cacactcgtt 60 ttgtgttcga gaagtagttg cgaaaacggt ccccttattg cctgacaagc taagggccac 120 ccttctttcc ccaccgccat catgtttttc gaaatactaa taggagctag cgccaaggcg 180 gtcaaagact tcattagcca ttgctattct cgtttgaaat ctatatacta ttctttcaag 240 cgatggctga tggagatatc cgggcaattt aaggcccacg acgcctttgt caacatgtgc 300 tttgggcaca tggctgacat tgaggacttc gaggcggaac tcgctgagga gttcgccgaa 360 agggaggatg aggtggagga ggccaggagc ctcttaaaac tgctggtcgc ccaaacatct 420 aaatctgggg tgaccgaggc ttggaccgac ttctttgtga agtcgagagg tggtgtttat 480 gcaccgcttt cctgcgagcc taccaggcag gaattagaag tcaagagcga gaagctcgaa 540 agacttctgg aggaacagca ccagtttgag gtgcgtgcgg ccaagaagta catcaaggaa 600 aagggccgtg gcttcatcaa ctgctggaac gacctgagga gccgcctcag actggtgaag 660 gacgtaaaag acgaggcgaa ggacaacgcc aaagccgctg ccaagatcgg agcggaaatg 720 ttcgcccctg tcaatgtcca ggacctctac agtttcacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcat caaagagaag aacggcgaag gagagaaaca cctcgagccc 840 attttggaag aggtgaggtc cattaaggac accgccgaag ctagggacgc tgcatccacc 900 tggataacag agacagtcaa gttgaaaaac tcgacactaa acgctgatga actgtctctc 960 gccaccatcg cccgctacgt cgaaaatgta ggggataaat tcaaacttgg cattgctagc 1020 aagacatatc tcaagcaagt cgcaacgatg tctgtaccaa ttccgactaa caaagacatc 1080 aaattgaaga tggtgctgca gagtcctgag gcacgtgcca ggcgggaacg catggacgtg 1140 ctcgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattcc 1200 ctattctcgg gctgccagag attgcggtca cagacggagc ccggctccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa cgcgcttgtg gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aggcaatcta ccccccccgc cctgagcatg acattttcac tgatacgatg gattacttcc 1440 aaaaatccat tatagaagag gtgggatact gtaaaacata tccagcgcaa ctcctggcta 1500 atagctatag cgcaggaaag agggccatgt atcacaaagc cattgcatcc ttgaaaactg 1560 tcccttatca tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtat aatatcatcc 1680 taggaactcg tttgaaattc aacgagaaga agatcatgca cgctatcgat agtgtgtttg 1740 gatcccccac tgtgctttct ggctatgata acttccagca aggaagaatc atagccaaaa 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggggtgga tgctagccgc tttgaccaac 1860 atgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcctgcactt gaacaccaaa tcaccaataa cattaagatg tttgtcgaag 1980 acaaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aacaccagca 2040 tgggaaacaa gcttataatg tgcggtatga tgcacgcata tcttaagaag ctgggtgttg 2100 aagctgaact atgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaga 2160 agctctttga tggcatgtac gaccatttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggaa caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgtcgctcag tgtggtttgg 2400 tgcttaacgc tggagtaccc atacttgaaa gtttctacaa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccacagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagtg tgaaggtgac gactccacat ctgcaatcaa 2700 tactgctttc cataccggaa aaccactcac aaaacgaata ttaattacca aatcttagct 2760 gggtttggga tagggtttat agtaagtata ccctgtacat tagctctcac gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg gattcagtag gccgtagagg 2880 acctagacga gcaaatcaaa atggcccaag aaggcggcgc cgtagagcaa ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcgagggaag 3000 aagagggcca gattctatac ctggatcagc aggcaggact gaggtattca tattctcagt 3060 cgacaacctt aaagccaact cttccgggac aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgccac tacgtcgggc gctatctttg ttgaactcga 3240 caccgcgtgc aagcaatcag ccctgggtag ctacattaat tccttcacca tcagcaaaac 3300 tgcctccaaa tccttcagag ccgaggcaat taatgggaag gacttccaag aatcaacgat 3360 agaccagttc tggctactat acaaggcaaa tgggacaact actgacactg ctggacaatt 3420 tataataagg ataaatgtca gtatgctgac tcccaaatag gtagactcct caccaccgga 3480 accgaaacca gcaccagaac cgacaccaac cccccagcca acgccggctc cgcagcctac 3540 acctgagccc actcctgcac cagcccccaa gagattcttt gagtatgtcg gaactccaac 3600 cggcacaatc tcaactagag agaattctga cagtatctct gtcagcaaac ttggtggcca 3660 gtcgatgcag tacatggaga atgagaaatg tgagacaaaa gtcattgact ccttttggag 3720 cactaacaac aacgtttctg cccaggcagc attcgtttat ccagtgccag aaggttcata 3780 cagcgtcaac atttcgtgtg aaggctttca atccgttgac cacatcggtg gcaacgagga 3840 tgggtactgg attggtctta tagcctactc caattcatca ggcgacaatt ggggagtagg 3900 taattataga gggtgcagtt tcaaaaactt cttggcaacc aatacttgga gacctggcca 3960 caaagatctc aagttgaacg attgccagtt cacagatgga cagatagttg aaagggacgc 4020 cgtgatgtct tttcacgtag aagcaacagg caatgatgcc tgtttctatc tcatggctcc 4080 caaaacaatg ataactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 gcgaatggaa tttggtacca tatctgtgac atgcgatgaa tccgatgttg aggctaaaca 4200 cataacaagg cacgctgaaa ctcccatccg ctccaagcac atccttgtgt ccgagcgata 4260 tgtggagcca ttgcccacca taaccgatca aggcttgtgt gatgtgaaaa ctcccgagca 4320 agaacaaaca ttggtggatg aagaagacag acaaactgtt tccactgaac ctgatatagc 4380 actccaggaa tacgaagctg ccacagctga aattcctgat gctgaagagg atgttttgcc 4440 ctccaaggaa cagctgtcct ctaagccatt ggacacgtct ggcaatataa tacctaaatc 4500 caaggaacct gaagtacttg gaacatacca gggtcagaac atttatcctg aagacgtacc 4560 tccaatggcg cggcagagat tgcgcgaagc cgcgaaagca ccctccacgt tgctatatga 4620 gcgaacgccg aagaagagca acaacttctt gactcgtttt atggaggcga ataggtcccc 4680 taccactccc gctgccccaa cagtgtcaac tacatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg actcacagca gctaaggaat acaaggcgca 4800 atttcagtga aggtatcacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgacctcca cgttatcgcc gtttgtattt ttgctctaac tgtgttgaca gggttaggcg 4980 cggtgatggg ttgctgccgt tggtgccgca gtaatccttt tcctccttcc ttctcttctg 5040 ttcaagcaaa agactctcgg tctgtgcgag agacaatcaa aaatatcgag ggagcttcgg 5100 ctcagtgaga ggattaacga cccccagcaa tggctggtct tggcggacat gaataacccg 5160 ctataagacg aagtggtaac cgccactgat caaaaggtaa acatgcttct gtgttgtaca 5220 ctgccccggg gactaccggg tcaacaaggc tattccacca actcgatgaa atgagagtgg 5280 agtgagcgga gtgggtgact tcgtgatgta cacccgatcg tcaggattga agacgttaaa 5340 actcgacgac ctggtgcaag tcgttaaact gactcgggtg gatacaccac acccggccga 5400 gcatgtaggc atacccacga tacgaaacgt gggtctcttg gagccactac ctgtgatgca 5460 aggtagggta tgagtcttag caagctctgt gccaggagat ggacataaac catagcaatc 5520 ctgcgtgtaa ccgcactggt gcaaacaaca ggtgaaccgt gtccacgggc ctgcctaccg 5580 aaaggaaagc cagtatccaa cacagcaatg tgttgggggt tacaccttcg gggtactctt 5640 aacgctgaca ctcgaaagag cagttcggca accc 5674 //