ID AJ783960; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC AJ783960; XX DT 14-JAN-2005 (Rel. 82, Created) DT 06-APR-2007 (Rel. 91, Last updated, Version 4) XX DE Wheat dwarf virus V1 gene, V2 gene, repA gene and Rep gene, isolate Barley XX KW coat protein; movement protein; Rep gene; repA gene; KW replication associate protein A; replication associated protein; V1 gene; KW V2 gene. XX OS Wheat dwarf virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2739 RA Koklu G.; RT ; RL Submitted (14-JUL-2004) to the INSDC. RL Koklu G., Plant Protection, Trakya Univ Tekirdag Faculty of Agric., 59030, RL Tekirdag, TURKEY. XX RN [2] RX DOI; 10.1007/s11262-006-0029-0. RX PUBMED; 16927119. RA Koklu G., Ramsell J.N.E., Kvarnheden A.; RT "The complete genome sequence for a Turkish isolate of Wheat dwarf virus RT (WDV) from barley confirms the presence of two distinct WDV strains"; RL Virus Genes 34(3):359-366(2007). XX DR MD5; 75a16ff21a55f4a3428b1a7be1c02464. DR EuropePMC; PMC4311259; 25633348. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Wheat dwarf virus" FT /isolate="Barley" FT /mol_type="genomic DNA" FT /country="Turkey:Tekirdag" FT /isolation_source="Hordeum vulgare" FT /db_xref="taxon:10834" FT misc_feature 1..405 FT /gene="long intergenic region" FT CDS 406..678 FT /gene="V1" FT /product="movement protein" FT /db_xref="GOA:Q5K2S1" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q5K2S1" FT /protein_id="CAH04377.1" FT /translation="MDQVFTPPRSIRADQYQAPYDPGSSDYAWRTFVFVSFGLLISVGV FT VWLAYTLFLKDCILVWKAKKQRRTEEIGYGNTPARPNGDQQGLPR" FT CDS 650..1432 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q5K2S0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q5K2S0" FT /protein_id="CAH04378.1" FT /translation="MVTNKDSRGKGKRKLEEGESSGRWKGQVYKRRKQTYKVVPVRPPA FT LCVYRFNWLNSDKTNIVVGNTPRIDLITCFAAGKADNNRHTNQTILYKFNLQGTLYVSD FT SSCMFITPIRVYHWLVYDAEPKQAMPDSTDIFTMPWNLLPSSWTVQRAWSHRFVVKRKW FT CVNLVSDGRKVGSKTVDSRYNYVVGKNIVDASKFVKGLRVTTEWMNTGDGKIGDIKKGA FT LYLVTCTRGGITGDSASIAFEVVCAYTHACYFKSIGIQ" FT misc_feature 1433..1609 FT /gene="short intergenic region" FT mRNA complement(join(1610..2023,2110..2739)) FT /gene="Rep" FT CDS complement(join(1610..2023,2110..2739)) FT /gene="Rep" FT /product="replication associated protein" FT /db_xref="GOA:Q5K2R9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q5K2R9" FT /protein_id="CAH04379.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMNTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFIAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVNTYTPEFPIESLMCHETIESWKNEHLYSESPGRHKSIYIC FT GPTRTGKTSWARSLGIHNYYNSLVDFTTYDVNAKYNIIDDIPFKFTPNWKCFVGAQRDF FT TVNPKYGKRKMIRGGIPCIILVNPDEDWLKDMTPEQSDYMYSNAVVHYMYEGESFFAYG FT ENVTASQ" FT exon complement(1610..2023) FT /gene="Rep" FT /number=2 FT CDS complement(1945..2739) FT /gene="repA" FT /product="replication associate protein A" FT /db_xref="GOA:Q5K2R8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q5K2R8" FT /protein_id="CAH04380.1" FT /translation="MASSSAPRFRVYSKYLFLTYPQCILEPQYALDSLRTLLAKYEPLY FT IAAVRELHEDGSPHLHVLVQNKLRASITNPNALNLRMNTSPFSIFHPNIQAAKDCNQVR FT DYITKEVDSDVNTAEWGTFIAVTTPGRKDRDADMKQIIESSTSREEFLSMVCHRFPFEW FT SIRLKDFEYTARHLFPDPVNTYTPEFPIESLMCHETIESWKNEHLYSVSLESYILCTST FT PADKAVTDLEWMDDYSRSHRDGISPSTSAVRQEQERLPGQDL" FT intron complement(2024..2109) FT /gene="Rep" FT /number=1 FT exon complement(2110..2739) FT /gene="Rep" FT /number=1 XX SQ Sequence 2739 BP; 682 A; 592 C; 759 G; 706 T; 0 other; agtaggaagc agaagcccgg caggtcctta gcgaaaaaac ggggtgtgca ctcgaactct 60 actctctacc ctgcgtggcc gtgtgcagaa ttcacacggt tgggatcggt gtccacggtt 120 taaataatgc aggaataggt gggaacgcgg gaccatgcct ttaggagcga aagcgacgtc 180 tggtcccgcg tgtggtttgt ggttcgggga cccgccacgc aggaatctaa tattaccctg 240 cgtggtgggt cccgaggcgc actcggcttt tcgtgagtgc gccgaggctt ttggaccacg 300 tctttatgtt atcactccaa taattagagg tgagtcatca ctctttgcac ctgcaattat 360 gtggcatcgc ttagcttata aggaagtgtc ggggaagata tctcgatgga tcaggtcttt 420 acaccgccgc gttctatacg ggcagatcaa taccaggccc cttacgatcc cgggtcctcc 480 gactacgcct ggcggacctt tgtgttcgtc tccttcggtt tgttaatatc cgtaggagtt 540 gtttggttgg cttacactct gttcttgaag gactgcatat tagtgtggaa ggcgaagaag 600 cagaggagga ccgaggaaat tggttacggg aatacaccgg ccagaccaaa tggtgaccaa 660 caaggactcc cgaggtaagg gaaagaggaa gctcgaggag ggcgaatcga gtggaaggtg 720 gaaggggcaa gtgtataagc ggcgtaagca gacctacaag gtagtacctg ttaggccccc 780 cgccttgtgt gtctaccggt tcaactggct gaattcagac aagaccaata tcgtggtggg 840 taacacccct cggattgatc ttattacctg ctttgcagcg gggaaggccg ataataatcg 900 gcatacaaat cagaccatcc tctacaagtt taacctacag gggactctgt acgtgtcgga 960 ctcctcatgt atgttcataa ccccaatcag ggtttatcac tggttggtct atgatgcaga 1020 gccgaagcag gctatgcctg actccactga catctttacg atgccgtgga atcttctgcc 1080 gagttcatgg actgtgcaga gggcttggtc gcatcggttc gtggtgaaga ggaagtggtg 1140 cgtgaacctg gtctccgatg gaaggaaggt tggatccaag acggtggact cccgttacaa 1200 ctacgtagtg ggaaagaaca tcgttgacgc ctccaagttc gtgaagggtt tgcgtgtgac 1260 gacggagtgg atgaacacgg gtgacggcaa gataggcgac attaagaagg gtgccctgta 1320 tttagtaacc tgtactcgtg gaggtatcac tggtgacagt gcctccattg cattcgaagt 1380 tgtatgtgcc tatacgcacg cgtgttactt taaatccatt gggattcagt aaataaaata 1440 gtattttatt catctcattg cattcgatta cagatgctcg gctacgagca aagataaacc 1500 aaactatgga aggccgcctc gggcttaaga ccgagtcgct gccggagtca aatacaaaaa 1560 tcgaaaagac attatttctc ggaaattgta gccgtccgcg ctaggacagt tactgcgaag 1620 cagtgacatt ttcgccgtag gcgaagaatg attcaccctc atacatatag tgaacaacag 1680 cgttagagta catgtaatcc gactgttcgg gagtcatatc cttgagccaa tcttcgtctg 1740 ggttcactaa gatgatgcaa ggtatgccac cccgtatcat ctttcgcttc ccgtactttg 1800 gattgaccgt gaagtcacgc tgagctccga cgaagcactt ccagtttggt gtgaacttga 1860 atggaatgtc atcaattatg ttgtacttgg cgttgacgtc ataggttgtg aaatcgacta 1920 ggctgttgta gtagttgtgg atccctagag atcttgccca ggaagtcttt cctgttcttg 1980 tcggaccgca gatgtagatg gacttatgcc gtcccggtga ctcctggaat aatcgtccat 2040 ccactctaaa tcagttacgg ccttatccgc aggagttgaa gtacaaagga tatatgattc 2100 gaggcttacg gagtatagat gttcattttt ccagctttca atggtctcat gacacatgag 2160 ggactcgatt ggaaactcag gtgtgtaagt gttaactggg tctgggaata agtggcgtgc 2220 agtgtactcg aagtctttca gacggataga ccattcaaac ggaaaacgat ggcagaccat 2280 gctgaggaat tcctctctcg aggtactcga ctcaatgatc tgtttcatat ccgcgtcacg 2340 gtctttacga cccggagtgg taactgctat gaatgttccc cactcagccg tgttgacatc 2400 ggagtcaacc tccttcgtga tgtaatcacg aacttggttg caatctttgg cagcttgaat 2460 atttggatgg aatatagaga atggggatgt gttcatacga aggttaagtg cattgggatt 2520 ggtgatcgaa gcacgaagct tgttctgcac gagtacgtgc agatgtggtg atccatcttc 2580 gtgaagctca cgaactgcag cgatgtagag aggctcatat ttggccaaga gagtgcgaag 2640 agagtccaag gcgtactgtg gttcaaggat gcattgagga tatgttagga agaggtattt 2700 ggaatagaca cggaacctgg gtgcagatga ggaagccat 2739 //