ID   AJ781295; SV 1; linear; genomic RNA; STD; VRL; 1578 BP.
XX
AC   AJ781295;
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DT   02-JUL-2005 (Rel. 84, Created)
DT   02-JUL-2005 (Rel. 84, Last updated, Version 1)
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DE   Sweet potato chlorotic fleck virus CP gene for coat protein and NB gene for
DE   putative nucleic acid binding protein, genomic RNA, isolate Mas
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KW   coat protein; CP gene; NB gene; nucleic acid binding protein.
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OS   Sweet potato chlorotic fleck virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1578
RA   Mukasa S.B.B.;
RT   ;
RL   Submitted (02-JUL-2004) to the INSDC.
RL   Mukasa S.B.B., Dept Plant Biology and Forest Genetics, Uppsala Genetics
RL   Center, SLU, Box 7080,, Uppsala, SE 750 07, SWEDEN.
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RN   [2]
RA   Mukasa S.B., Tairo F.D., Tugume A.K., Valkonen J.P.;
RT   "Molecular detection and vector transmission of Sweet potato chlorotic
RT   fleck virus";
RL   Unpublished.
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RN   [3]
RA   Mukasa S.B.;
RT   "Genetic variability and interactions between three genera of sweet potato
RT   infecting viruses";
RL   Unpublished.
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DR   MD5; 37d157a83af55e368a39ce4a0d4e59dd.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1578
FT                   /organism="Sweet potato chlorotic fleck virus"
FT                   /isolate="Mas"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Masindi District"
FT                   /isolation_source="Sweet potato"
FT                   /db_xref="taxon:263004"
FT   CDS             29..1141
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q4LCT9"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:Q4LCT9"
FT                   /protein_id="CAH03134.1"
FT                   /translation="MFAGESQEQFKERLDKYSRIRREARDEGKSSSEVKALLDLEVEED
FT                   KKRFARKEPTKNSSPQVFQGHILGAPMAAKEADTMDKVESSKGKEKAGGQTTTLEGLNE
FT                   VKAAQGEISDQQLMKHDALIKWYMENYRPSDVVNPLMQSGDKHVTLSDNLKEDAANIYS
FT                   RPNFNTLLKWNREPVSQSIATAEDIAQIEAMLVGLGIPQERVRTAILDIVLYAAHSSSS
FT                   PQQLYEGDIDFRDANFKEAISRSSVAAVIKDKSTIRKVCRLFAPVVWSYMIINNEPPSG
FT                   WQAKGFPENAKFAAFDTFDFVTNNAAIKPLEGIARPPNSVEYIAAQTSKRILIDKARRN
FT                   EKLSNYEASVTGGQQACEIKTELKGNGKCK"
FT   CDS             1125..1526
FT                   /gene="NB"
FT                   /product="putative nucleic acid binding protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q4LCT8"
FT                   /protein_id="CAH03135.1"
FT                   /translation="MGSASERPPNFVATFLYGRGLLCDWDCCLLISSIVSNYNKGMRTY
FT                   KFFACGQSKSAIKRRARRMQICPRCAKYECGKRCEPNTYSQFQVKELVTVGVNRYTTEN
FT                   ITKKGTNVRRHCKNELEFIKYESLKVKPK"
FT   3'UTR           1527..1578
XX
SQ   Sequence 1578 BP; 510 A; 289 C; 398 G; 381 T; 0 other;
     gtctttaggt tgtgagactt aaattgaaat gtttgctggg gagagtcagg aacagtttaa        60
     agaaagattg gacaaatata gtagaataag gagagaggca agagacgagg ggaagagtag       120
     ctctgaggtg aaggcactgt tagatctaga agtggaagag gacaagaaga gatttgcacg       180
     caaggaacct accaagaaca gctcacctca agtgtttcaa ggtcacatac ttggagcacc       240
     tatggcggcg aaggaggctg atacaatgga taaagtggag tcaagcaaag gtaaggagaa       300
     agctggaggg caaacaacca cacttgaagg attgaatgag gtgaaggccg ctcagggaga       360
     gatatccgat cagcaattaa tgaagcacga tgcattgatc aagtggtaca tggaaaacta       420
     cagaccttct gatgtagtta atcctctcat gcaaagtgga gataagcacg tgacactcag       480
     cgacaatttg aaggaggatg cagctaacat atacagcagg cccaatttca acactcttct       540
     aaagtggaac agggagcccg tgagtcaaag cattgcaaca gctgaggata tagctcaaat       600
     tgaagcgatg cttgttggtt tgggcatacc acaagagaga gtgaggacag ctattctgga       660
     tattgttctc tatgctgctc actcaagctc ctcaccccaa caactgtacg agggtgacat       720
     agattttcgc gatgcgaatt tcaaagaggc tatatctaga tcctctgtgg ctgctgtaat       780
     caaggacaaa tccactatta gaaaagtctg tcgccttttt gcacctgtgg tttggagcta       840
     tatgataatc aacaatgaac ccccatcagg gtggcaggct aaaggcttcc cagagaatgc       900
     aaagttcgct gccttcgaca cttttgattt tgtgacaaac aatgccgcca tcaaacccct       960
     tgagggcatt gctaggcccc caaattctgt ggaatacata gctgctcaaa caagcaagag      1020
     gatccttatt gacaaagctc gtaggaatga gaagctcagc aattatgaag cgagtgtgac      1080
     aggagggcag caagcatgtg aaatcaagac cgaacttaaa ggcaatggga agtgcaagtg      1140
     agagacctcc aaatttcgtt gctacctttc tttatggccg cgggctgtta tgtgattggg      1200
     attgttgtct tttgatttct agtatagtta gtaactacaa taagggcatg agaacctaca      1260
     agttcttcgc ttgtggccaa tcaaaatcgg ccattaagcg gagggctagg aggatgcaaa      1320
     tttgccccag gtgtgctaaa tatgagtgtg gtaagaggtg tgaaccaaat acctatagtc      1380
     agtttcaggt gaaggaattg gtcactgttg gtgtgaatag gtacactacc gaaaacatca      1440
     caaagaaagg gaccaatgtc cgacgccatt gtaaaaatga attagaattt attaaatatg      1500
     aaagtcttaa ggtaaagcct aaataataaa taaaccatta ggactataaa ctttgcatgt      1560
     tttaaagtac ttttgagc                                                    1578
//