ID AJ781003; SV 1; circular; genomic DNA; STD; VRL; 7297 BP. XX AC AJ781003; XX DT 25-NOV-2004 (Rel. 81, Created) DT 21-MAR-2017 (Rel. 132, Last updated, Version 3) XX DE Cacao swollen shoot Togo A virus complete genome XX KW ORF1; ORF2; ORF3; ORFX; ORFY. XX OS Cacao swollen shoot Togo A virus OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; OC Ortervirales; Caulimoviridae; Badnavirus; Badnavirus zetainflatheobromae. XX RN [1] RP 1-7297 RA Muller E.; RT ; RL Submitted (29-JUN-2004) to the INSDC. RL Muller E., UMR BGPI, Cirad, TA 41/K, Campus International de Baillarguet, RL 34398 Montpellier cedex 5, FRANCE. XX RN [2] RA Muller E., Sackey S.; RT "Molecular variability analysis of five new complete cacao swollen shoot RT virus genomic sequences"; RL Arch. Virol. 150(1):53-66. XX RN [3] RA Muller E., Sackey S.; RT "Molecular variability analysis of five new complete cacao swollen RT shootvirus genomic sequences"; RL Arch. Virol. 50(1):53-66(2005). XX DR MD5; edf62f20f7373485263df0402fbafeef. DR EuropePMC; PMC4974523; 27399761. DR EuropePMC; PMC5537673; 28696406. DR EuropePMC; PMC5649073; 29052506. XX FH Key Location/Qualifiers FH FT source 1..7297 FT /organism="Cacao swollen shoot Togo A virus" FT /host="Theobroma cacao" FT /isolate="Wobe12" FT /mol_type="genomic DNA" FT /country="Togo:Litime" FT /isolation_source="Theobroma cacao leaves" FT /db_xref="taxon:1960254" FT CDS 432..863 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:Q5TJ71" FT /protein_id="CAG70340.1" FT /translation="MSSRWESSIQEWYEKSHTANLEYLDLASTSKVTNNQLAHNLAVTF FT DRVNLGNRVFIKNLKQIQESILELNTRVDTIEAVLRRLTKTFRENKPLTESEVRKLVEE FT IAQQPKIVEKQALEISQQLEQKLEKVEKLLHKLDQWVGQ" FT CDS 860..1309 FT /product="nucleic-acid binding protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q5TJ70" FT /protein_id="CAG70341.1" FT /translation="MTDSPSYQEALKEAEKVDPPAVGLTTSTGVTAVQGFRAVIKQNNV FT QICLLAAIADKLDDLVQDRKQARKEKAKEVAIPEDLITKLKGLSLQEKGEEKVTRKEEP FT KGKLVVFKDPYKILAAEKAKITPKIPKEKKEDKKDEPGQNSALSS" FT CDS 1275..6881 FT /product="CP, RT, RNaseH and protease polyprotein" FT /note="ORF3" FT /db_xref="GOA:Q5TJ69" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q5TJ69" FT /protein_id="CAG70342.1" FT /translation="MSRARTQHSVPSVTSTSEQQREGPLYEDQIRDYRRGQRRIFNLRR FT QARRLRRSVTGSRYQETLEQEIDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTH FT RSEESVLCIGNNQVDRAFIQPESLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVV FT FRDNRWTGDQSIFAQMEIDLTKGSQLVFVVPDTMMTIGDFARNVQLSILTRGYESWQNG FT EANLLITRGMTGRLSNTPNVAFAYQIASATDYLASHGVKAIAGKKLNLQHLRNQQWILR FT PPQADVTPMQPRSVETRNLVDGSISIRFHDYEAAPSTSRPHYNEEDEEIESEAESEIRD FT HTVAVWIIGEEEIADQTGRRKVWEESANGNGRFFRYYTPLPTTNEQIVATGWGSDDEDD FT HSPRWDTSPEEDEDDEEEPIWSNETDSEEGDEEPVWDKEENEEEEETIIREESEEDEYD FT PNIYMAYLQREEDDWTEIIAGINSEMEYPQRRPQQTETVVYSETADYTPPGDTVMTPVG FT YPPASSSRSTVTAPTRPPLYEGRMPHAPRFLKRDDYTEWWQLPSSQGTTGALFVMPRQV FT GLFHEVFSRWESITKNYVAAQGFTDPVEKMEFIENLLGETEKLTWIQWRMNYETEYQTL FT LTLADGRQGTQNILSQIKRVFSLEDPASGSTRIQDAAYRDLERLTCNNIKDIVQFLNGY FT GRLAAKSGRLFLGAELSEKLWMKMPPELGHRMKEAFQKEYAGNEVGVFPRILFAYRYLE FT QECKDAAFKRSLKSLSFCKDMPLTGYYDKAPRYGMRRSKTYKGKPHASHARVEKRKHLI FT RNKKCKCYLCGDEGHFARECPNTKRDVKRVAIFEGINLPEDYDIVSVEEGEEESDAIYS FT ISENEEELKEEVVHQEKIFMMKEEDQSYWLGKPNHWTAMVRVNHQQYHCEHQWEHNKEI FT TVLAHISCHFCKQPTNFKSRVHCPICKLTSCFMCSPIYCNIQVQQQPKAPLPFNANSLL FT QQQAAYIQWLETENKRLQELVNFYKDLYENEELKLQQELEIDRQDLEEHDRRRRVQLST FT ENPEELAYLEEDTITRVIGHTVEEKQEVRKTVKRGNMLYNLDVILIIPEVGKPIKVKAI FT LDTGATTCCTNINSVPKTAIEQNTFLVQFRGINSTQSVDKKLRYGRMTISGHQFRIPYC FT YAFPLSLGDEIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAGMVGGTTLSN FT LGEEEGPSCCSSSCSSSSPIHEVFELTEKEEGEFDQEIHQQIISHAVAHTQQTKLSTKL FT QKLLAQLKEQGFIGENPMKHWAANKILCKLDIKNPDLVIEDKPIKHLTPAMEKQFKRHV FT QALLDIGVIRPSKSKHRTTAFIVESGTTIDPVTKKTVHGKERMVFNYKRLNDNTEKDQY FT SLPGIQTILKRVGNKKVFSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLK FT NAPAVFQRKMDQCFQGTEDFIAVYIDDILVFSETMEEHAEHIATMLKICQKNGLVLSPS FT KMSIAQREIEFLGTIISNGKMKLQAHVIKKIISKAQLELETTKGLRSFLGLLNYARVYI FT PNLGRKLSPLYAKTSPTGERRLNRQDWRLINEIKGMVQKLPDLDIPPAQCCTVIESDGC FT MEGWGGICKWKTVKEDSRSTERICAYASGKFSTLKSTIDAEIHALIKALESFKIFYLDK FT KHLIVRTDCQAIVTFHNKTSGHKPSRIRWITFSDYLTGLGVQVTIEHIEGKENYLADTL FT SRLVFSTWSQFQTQSQEEEEQRRYPQPSCAVLTTHIVWPMTAYYNKRRTPSHMGPSAWL FT LNKPFLLNSTDSRSKLHKRHSSHYVTSKAYCTMRKTICPLLPPGTIGHLTNYH" FT CDS 2458..2703 FT /product="hypothetical protein" FT /note="ORFX" FT /db_xref="UniProtKB/TrEMBL:Q5TJ68" FT /protein_id="CAG70343.1" FT /translation="MMKMTILLDGILARKRMKMTKKNLFGRMRPIVKKEMRSQYGIKKK FT MKRKRKPLLGKKAKKMNMTLIFTWPTFKGKKMTGRK" FT CDS 6563..6958 FT /product="hypothetical protein" FT /note="ORFY" FT /db_xref="UniProtKB/TrEMBL:Q5TJ67" FT /protein_id="CAG70344.1" FT /translation="MEPIPDAVAGRRRAAEVPATQLRGVNYPYSLAYDGLLQQEKDTIT FT HGTLSLATEQAISAQLYRLKEQAAQKALIALRDFQGVLHHEKNHLSSSATRDNWASDKL FT PLVRQSSMELDQHSAAIYAIIERVVQP" XX SQ Sequence 7297 BP; 2483 A; 1508 C; 1666 G; 1640 T; 0 other; tggtatcaga gcgaggttaa acatggtcat gtcaggctaa aaacttagtg ttaggttcgg 60 ggaaagaggt ctactgtgtg tttcgaatat ccatttgtta ttatccatac agtgtctgtt 120 ccttgtgtta ggctgaaaac ctgaggttgt gaactacgga gtgatcattt caaaaggaat 180 ttcattctaa ctatcgtatg ctctagactt gccctgttat agcaacagag gatcctgtct 240 atcagaaaat agtttgaata attccgatga tctctcatac tttaggtata acaacgccac 300 gtataaggag ctaattcttt tgtaaaagac gtaacccaga agagagtacc cagagaggga 360 gaagacttgg ggagaaggtg aacagaagag agagcttact gtacctggta ctgttatagg 420 aagattttgt tatgtccagt cgctgggaga gtagtataca agagtggtat gagaagtcac 480 acacagcaaa ccttgagtac cttgacctag catctactag taaagtgacc aacaaccagt 540 tagcacataa ccttgcagta acctttgata gagtaaattt aggtaaccga gtttttatta 600 aaaacctgaa gcagattcaa gagtctattc ttgaattaaa cacccgtgtt gatactatag 660 aagcagtttt aagaaggtta accaagacct tccgagaaaa caaaccactt accgaaagtg 720 aagtccgtaa gttggttgaa gaaattgccc aacaacctaa gatcgtcgag aaacaagcac 780 tcgagatctc tcaacagctt gagcagaagc tggagaaagt tgaaaaactt ctccataagc 840 ttgaccagtg ggttggtcaa tgaccgacag cccgtcttac caagaagcct taaaagaagc 900 agaaaaggtt gacccaccag cagttggatt aactacttct acaggagtaa cagcagtcca 960 aggatttagg gctgtcatca agcagaataa cgttcagatt tgcttactag ctgccatagc 1020 agataagctt gacgatcttg tccaagatcg gaagcaagca aggaaagaaa aggcaaaaga 1080 agtcgccatt cccgaagacc taatcaccaa actcaaggga ttatccctcc aggagaaagg 1140 tgaagaaaaa gtaaccagaa aagaagaacc aaaaggaaaa ttggtggtat tcaaagatcc 1200 ttataagatc ttagcagctg aaaaagctaa gataacgcca aagattccca aggagaaaaa 1260 ggaagataag aaggatgagc cgggccagaa ctcagcactc agttcctagt gtcacttcca 1320 ctagtgaaca acagagggaa ggtcctctct acgaggatca gatcagagat tacagacgcg 1380 gacaaaggcg aatcttcaac ctgcgaagac aagccagaag gttaagaaga tccgtgactg 1440 gatctagata ccaggagaca ctagaacaag aaatagatcc gcaaacaacg ttaaggctct 1500 caatgcaaga gagggcgaga ttagtaccag ccgaagtact gtacagatcc agacgagaca 1560 ctgtgcatca cagagtctac acacaccgat cagaggaatc agtcctatgc atcggaaaca 1620 atcaagttga cagggcattc attcagcccg aaagtctgga acaactacag aggacaggga 1680 tgtccttcat acacatcggt attctccaag taagaattca aatactgcac cggcaagagg 1740 aaggaactat ggcgttagtt gtcttcagag acaacaggtg gaccggtgac caatctatct 1800 ttgctcaaat ggagatagat ctgacaaagg gcagccaatt ggtgtttgtc gtaccagaca 1860 ccatgatgac tattggagat ttcgcaagga atgtccaact gtccattttg acaagaggat 1920 acgagagttg gcagaacgga gaagccaatt tgctgattac acgtggtatg actggaaggt 1980 tatccaacac acccaacgta gccttcgcct atcaaatagc cagcgcaaca gattatctgg 2040 caagccacgg agtaaaagca atcgcaggaa agaaactaaa cctgcagcat ttgcgtaacc 2100 aacagtggat attacgaccg ccgcaagcag atgtcacacc aatgcaacca cggtcagttg 2160 aaaccagaaa tctggttgat gggagcatct ccatcagatt ccatgactac gaagcggccc 2220 cttcaacttc cagacctcat tataatgagg aagatgagga aatagaatca gaagcagaat 2280 cagaaataag ggaccataca gtcgcagtat ggataattgg tgaagaagaa atagcagatc 2340 agacaggcag aagaaaagta tgggaagaat ctgctaatgg aaacgggaga tttttccgtt 2400 attatacacc cctaccaaca actaatgaac agatagtagc aacaggatgg ggaagcgatg 2460 atgaagatga ccattctcct agatgggata ctagcccgga agaggatgaa gatgacgaag 2520 aagaacctat ttggtcgaat gagaccgata gtgaagaagg agatgaggag ccagtatggg 2580 ataaagaaga aaatgaagag gaagaggaaa ccattattag ggaagaaagc gaagaagatg 2640 aatatgaccc taatatttac atggcctacc ttcaaaggga agaagatgac tggacggaaa 2700 taatcgccgg cattaacagt gaaatggagt acccgcagag gcgaccacaa caaacagaaa 2760 cagttgttta ttcagaaacc gctgattaca ctccacctgg cgatactgta atgacacctg 2820 ttggatatcc accagcctcc tcttcaaggt ctacagttac agctccaact agacctccac 2880 tatatgaagg aagaatgcca cacgcgccca gattcttgaa gcgcgatgac tacaccgagt 2940 ggtggcaatt gccctcatca caagggacaa caggagcgtt gttcgttatg ccaagacaag 3000 tgggcctatt ccatgaagtg ttctcaagat gggagtccat tacgaaaaac tatgttgcgg 3060 cccaaggctt tactgaccca gtagaaaaaa tggaatttat agaaaatcta ttgggagaaa 3120 ctgaaaaact tacctggatt cagtggcgta tgaattacga gacagaatac cagacgttgt 3180 tgaccttggc agatggtcga caagggacgc agaacatact gtcccaaatc aagagagtct 3240 tctccttaga agaccctgct tctggatcta ccagaattca agatgctgca tacagagacc 3300 tggaaaggtt aacatgcaac aatatcaaag acatagtcca attcttaaat ggctatggaa 3360 gacttgcagc aaaaagcgga agactgttct taggggcaga attaagtgaa aagttatgga 3420 tgaaaatgcc ccctgagtta ggccatagga tgaaagaagc attccagaag gaatatgctg 3480 ggaatgaagt cggagtgttc ccacgaatcc tatttgccta cagatatctg gagcaagaat 3540 gtaaggacgc cgcattcaaa aggagtctaa agtccttatc cttctgcaaa gatatgccct 3600 taactgggta ttacgataaa gctccaaggt acgggatgag aaggtctaag acctacaagg 3660 gaaaacctca tgcttcccac gcaagggtgg aaaagaggaa gcatctcatc aggaacaaga 3720 aatgcaaatg ctacttgtgc ggagatgaag gccatttcgc aagggaatgc cctaatacaa 3780 agcgagatgt aaaaagggta gcaatatttg aaggcatcaa cctcccagaa gattatgaca 3840 tagtctctgt ggaagaagga gaagaagagt ccgatgccat atatagcatt tctgaaaatg 3900 aggaggagct taaggaagaa gtagtccacc aggagaagat cttcatgatg aaggaggaag 3960 atcaatctta ttggttaggg aaacctaatc actggacagc gatggtacga gtaaatcatc 4020 aacagtacca ttgcgaacac caatgggagc acaacaagga gataacggta ttggcccaca 4080 tcagctgcca cttctgcaag cagcctacaa acttcaaaag tcgggtccac tgccctattt 4140 gcaaacttac aagttgcttc atgtgctcac ccatatattg caacattcaa gttcaacagc 4200 agccaaaggc gcctttgcca tttaatgcca actcattact ccagcaacag gcagcataca 4260 tccaatggtt ggaaactgaa aataaaaggc tgcaagagct cgtgaatttc tacaaagatc 4320 tttatgagaa tgaagagctg aagcttcaac aggaacttga aattgatagg caagacctag 4380 aagaacatga cagaagaaga cgggttcaat taagcacaga gaacccagaa gaattagctt 4440 atcttgagga agatacaatc acgcgagtca taggacatac agtcgaagaa aaacaagaag 4500 tcaggaagac tgtaaaaagg ggaaatatgc tctacaacct cgacgtgatc ctcataatac 4560 ctgaagtagg aaaacctatc aaggtaaaag ctatactgga cacaggcgct acaacgtgtt 4620 gtaccaatat caactcagtg cctaaaactg ctattgagca aaacactttc ctagtccagt 4680 tcagaggaat caattcaact caatccgttg ataagaagct ccgctacgga agaatgacaa 4740 ttagcgggca tcaattcagg attccttact gttacgcatt tccattatcc ctcggtgatg 4800 aaattgagat gatcctcggt tgtaatttta tacgaggaat gtatggcggt ttacgtattg 4860 aaggtcatac tatcaccttc tacaaaaacg taacaacaat ccaaacccgc ctagccgcag 4920 gaatggttgg tggtacaacc ctttcaaatt tgggggagga agagggccca agctgctgct 4980 ccagctcctg ctccagctca agcccaatcc atgaagtttt tgagctcact gaaaaagaag 5040 aaggggaatt tgaccaagaa atccaccagc agatcataag ccatgccgta gcccatactc 5100 aacaaacaaa attgagtaca aaactccaaa agctactggc ccagttaaaa gaacaaggct 5160 ttataggaga aaacccaatg aagcattggg ctgccaataa aattctgtgc aaattagaca 5220 tcaagaatcc agacttggtg attgaagata agcccataaa acacttgacg cccgcaatgg 5280 agaagcagtt caaaagacat gtccaagccc tcttggatat aggcgttata aggccaagca 5340 agtcgaagca cagaaccaca gcctttatcg ttgaatccgg cacaacgata gatccagtga 5400 caaagaaaac cgttcatggc aaggaaagaa tggtttttaa ctataaaagg ctgaatgaca 5460 acactgaaaa ggaccagtac tcactaccag ggattcaaac tatcttgaaa agggtaggaa 5520 acaaaaaggt ctttagtaag tttgatttaa aatccggatt tcaccaagta gcaatggcgg 5580 aggagtctat accatggacc gctttctggg ttccacaagg actctacgaa tggcttgtga 5640 tgccatttgg tctaaagaat gctccagctg tgtttcagag gaaaatggat caatgtttcc 5700 aaggaacaga ggatttcatt gcagtttaca tcgatgatat cctagttttc agcgaaacga 5760 tggaggaaca tgcagagcac attgctacaa tgctcaaaat atgtcagaag aatgggttag 5820 tccttagccc aagcaagatg agcatagccc agcgagagat agagtttttg ggtactatca 5880 tctcaaatgg gaaaatgaag ctccaggccc atgtgattaa aaagataata agcaaggccc 5940 agttagagct tgaaaccaca aagggcttga gatccttcct aggtctctta aattatgccc 6000 gagtatacat acccaatcta ggacggaaac ttagtccact ttacgcaaag accagcccaa 6060 caggagaaag aagattgaat agacaagact ggcgtctcat caatgaaata aaagggatgg 6120 tccaaaaact ccctgatctt gacattccac cagcccaatg ttgtactgtc attgaaagtg 6180 acggctgcat ggaagggtgg ggcggaatct gtaagtggaa gacagtaaag gaagactcac 6240 gatcgacgga gcgaatctgt gcctatgcaa gtggaaagtt cagtacacta aaatccacta 6300 tagacgcgga aattcatgcg ttaattaagg ctttagagtc tttcaaaata ttctatctgg 6360 ataagaagca ccttatcgtg agaactgact gccaggcgat tgtgaccttt cataacaaga 6420 caagcggaca caaaccttcc cggatacgct ggataacttt ttcagactat ttaacgggac 6480 tcggtgttca ggtgacaatc gaacacattg aaggaaaaga aaattactta gccgatactc 6540 tcagtcgact agtattttca acatggagcc aattccagac gcagtcgcag gaagaagaag 6600 agcagcggag gtacccgcaa cccagttgcg cggtgttaac tacccatata gtttggccta 6660 tgacggccta ctacaacaag agaaggacac catcacacat gggaccctca gcttggctac 6720 tgaacaagcc atttctgctc aactctaccg actcaaggag caagctgcac aaaaggcact 6780 catcgcatta cgtgacttcc aaggcgtatt gcaccatgag aaaaaccatt tgtcctcttc 6840 tgccaccagg gacaattggg catctgacaa actaccacta gtccgacaaa gttcgatgga 6900 actggaccag cactccgccg cgatttacgc aataattgaa cgagtggtcc aaccctaatt 6960 tggacagtag taaaggtgga tgtaattatt gtactagaat gctttatgct ttatgagttg 7020 taacgcatta tagaggaata acatgattga cgatggggcc caatgagcac ccgaatcatg 7080 aatttccaat ctataaatag cgagtttgta agcttagcta tcagagagtg tgaaaactac 7140 tcaactgatc ctaagcctta gagtttgtat tttctaagag tttgtaagat tttctttatg 7200 aaataaagag tctactttgt gtttatctct ttgttccacc tgggatttaa actgatttaa 7260 actgtttccg caccatcggg ttgcgtccga ttgatgt 7297 //