ID   AJ746191; SV 1; linear; genomic RNA; STD; VRL; 1533 BP.
XX
AC   AJ746191;
XX
DT   09-JUN-2005 (Rel. 84, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
XX
DE   Lettuce necrotic yellows virus N gene for nucleocapsid protein, genomic
DE   RNA, isolate 2
XX
KW   N gene; nucleocapsid protein.
XX
OS   Lettuce necrotic yellows virus
OC   Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes;
OC   Mononegavirales; Rhabdoviridae; Cytorhabdovirus.
XX
RN   [1]
RP   1-1533
RA   Dietzgen R.G.;
RT   ;
RL   Submitted (08-JUN-2004) to the INSDC.
RL   Dietzgen R.G., QABC, Qld Bioscience Precinct, Dept of Primary Industries
RL   and Fisheries, The University of Queensland, 306 Carmody Rd, St Lucia Qld
RL   4072, AUSTRALIA.
XX
RN   [2]
RX   DOI; 10.1007/s00705-005-0528-7.
RX   PUBMED; 15824884.
RA   Callaghan B.P., Dietzgen R.G.;
RT   "Nucleocapsid gene variability reveals two subgroups of Lettuce necrotic
RT   yellows virus";
RL   Arch. Virol. 150(8):1661-1667(2005).
XX
RN   [3]
RA   Callaghan B.P.;
RT   "Molecular characterisation of lettuce necrotic yellows virus";
RL   Unpublished.
XX
RN   [4]
RX   DOI; 10.1006/viro.1994.1438.
RX   PUBMED; 8030210.
RA   Wetzel T., Dietzgen R.G., Geering A.D.W., Dale J.L.;
RT   "Analysis of the nucleocapsid gene of lettuce necrotic yellows
RT   rhabdovirus";
RL   Virology 202(2):1054-1057(1994).
XX
DR   MD5; 61c86c6d91d6234e8a52a539510222d9.
XX
CC   Related sequence: L30103.1
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1533
FT                   /organism="Lettuce necrotic yellows virus"
FT                   /host="Allium sativum (garlic)"
FT                   /lab_host="Nicotiana glutinosa"
FT                   /isolate="2"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia:Victoria"
FT                   /isolation_source="10 years passage in Nicotiana glutinosa"
FT                   /tissue_type="leaf"
FT                   /note="Original isolate (#318) given in L30103.1"
FT                   /db_xref="taxon:32612"
FT   CDS             79..1458
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:Q86134"
FT                   /db_xref="InterPro:IPR004902"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q86134"
FT                   /protein_id="CAG34083.1"
FT                   /translation="MTTSAEKLAKLEQLRKERAAVIQKPTTQVSSEPVVTEKPRVRNTA
FT                   YDSLAGVTIGKRASRKWSDADIKSIPIYDVHQVPAAQVIALGKDLLTQIQNNSVNTVTV
FT                   DYCLVLAVSIPKPAMTSFEHLLTPPSTEQGTRLDFTQPQAGVSNRSGLTAIEKMTLNAT
FT                   RKNLLTETDEEKRARYEAIIKKMEDQEAGLGTSKATVVTSETEAAAYGFLAATLLKLYA
FT                   KSTESYVAGLAQIRNRFAAWYDCPKAVLDAFQPTEAALVSLRAAFARRPEVLSTWTLWV
FT                   AVNENRTPGLLVTQQGLLNYLACQQFAYPGMHAYTLLIEIHEHTGMKFSDLLVEMDCPA
FT                   TRAGVREALELIRDYEITKDHPKRTTYFRYARNWDPKYFGALQSTECKTLVYVAASVSK
FT                   KVSAQGANGDPMEIFAIKNLDATIKARLDPVAENMAGKILDQMLMDEMSGASWATKAST
FT                   Q"
FT   variation       469
FT                   /replace="c"
FT                   /citation=[4]
XX
SQ   Sequence 1533 BP; 470 A; 316 C; 374 G; 373 T; 0 other;
     gaaaccacat taagtcatac ccttctaatt gtataccctg tgttatttca gtcaaagtcc        60
     actaatcctt atccaaagat gactacatcc gctgagaagt tggctaagtt ggaacaattg       120
     aggaaagaga gggctgctgt gatacaaaaa cccacaactc aagttagctc tgaaccggtg       180
     gtgacagaga aacccagagt taggaacacg gcgtacgaca gtctagcagg agtgacaata       240
     gggaagagag catcacggaa atggtcggat gcagatatca agagtatccc gatatatgat       300
     gtccatcagg ttcctgctgc tcaggtgatt gcattaggaa aggacctttt gacacagatt       360
     cagaacaact ctgtgaacac ggtcactgta gactactgtc tagtccttgc tgtgtcaatc       420
     cccaagcctg caatgacatc atttgagcat ctcctcacac ccccatctac ggaacaaggt       480
     acaagacttg atttcacaca accgcaggct ggagtctcga acagatcagg gttgacagca       540
     attgaaaaaa tgactctgaa tgcgactcgg aaaaatctat tgactgagac ggatgaagag       600
     aagagagcca gatatgaagc gataataaaa aagatggaag atcaagaagc ggggctgggg       660
     acatcgaagg ccactgtggt gacatccgaa actgaggcgg cagcttatgg attcttagct       720
     gccacattgt taaaactgta cgcgaaatca actgagtcct atgtagccgg gctggcacag       780
     ataagaaatc ggtttgctgc gtggtatgat tgtccgaaag ctgtgttaga tgctttccag       840
     cctactgaag cagccttagt atcattgaga gcagcgtttg cacgcagacc tgaagtctta       900
     tccacatgga ctttatgggt tgcagtgaat gagaacagaa cccctggatt gctagtgact       960
     cagcaagggt tactgaatta ccttgcctgc caacaatttg cctaccctgg tatgcatgca      1020
     tacactctct tgatagagat acacgagcac acgggtatga agtttagtga tttgctagtg      1080
     gagatggatt gtccggccac tagagcaggt gtacgggagg ctctggagtt gataagagat      1140
     tatgagataa ccaaagatca tcctaaaaga accacttact ttagatatgc taggaattgg      1200
     gatccaaaat attttggggc actacaatct acagagtgca agactctcgt atacgttgct      1260
     gcgtctgtca gtaagaaggt ctctgctcag ggcgcaaacg gtgaccctat ggaaatattt      1320
     gccatcaaaa atctcgacgc aaccatcaag gctcggttag accccgtggc cgagaatatg      1380
     gcaggtaaga tattggatca aatgcttatg gatgagatgt ctggagcatc gtgggcgaca      1440
     aaggcatcaa cacaatgaag agttgatgtc attaaacatt tatgcgtatt tgatactata      1500
     cttatatcac ttgttactga agatttaaga aaa                                   1533
//