ID AJ717581; SV 1; circular; genomic DNA; STD; VRL; 2797 BP. XX AC AJ717581; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 5) XX DE East African cassava mosaic Kenya virus segment DNA A, complete sequence, DE isolate EACMKV-[K261] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2797 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; aa37135981958b951be8695a77857303. XX FH Key Location/Qualifiers FH FT source 1..2797 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMKV-[K261]" FT /mol_type="genomic DNA" FT /country="Kenya:Migori, Otho" FT /clone="K261FA-6[2002]" FT /db_xref="taxon:393599" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A892" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A892" FT /protein_id="CAJ78328.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHYPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A891" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A891" FT /protein_id="CAJ78329.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTIRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENVKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A890" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A890" FT /protein_id="CAJ78330.1" FT /translation="MDSRTGELITAPQARNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEQHVIKFNLY" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A889" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A889" FT /protein_id="CAJ78331.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKARAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSL" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A888" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A888" FT /protein_id="CAJ78332.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALAQLRRLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNNRFFDLISPSRSAHFHPNIQGAKSSSDVQSYM FT DKDGDTIQWGKFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLTPYVSPFLSSSFTNVPEELEDWVSDNVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITIHEPL FT FSSAHQSPTPHSEGQGRQT" FT CDS complement(2196..2492) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A887" FT /protein_id="CAJ78333.1" FT /translation="MKMGNLICMPSFSSRASTIVPTIDFSTSYPLPGQHISIQTFRELN FT PAPTSNPIWTRTETPSNGASFRSTDDLLEGDNNPPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2797 BP; 724 A; 563 C; 722 G; 788 T; 0 other; accggatggc cgcgcccgaa aaagcagatg gaccccacaa gatggccgcg tccgtgaaag 60 aaagtggtcc cccccacttg ttttggtcgg ccagtcatat tcacgcgtga aagtctagat 120 atttgttgtt tgtctttata gacttcgtcg cgaagtagtg gagcgcgtca acatgtggga 180 tccattgttg aacgattttc ccgaaaccgt tcacggtttc cgttctatgc ttgctgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggctg agtatatacg 300 tgatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactatc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 atcggaagcc caagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcc tatgaacaga gggatgatgt gaagcacact ggtatggtcc 600 gatgtgtcag tgatgttact cgtggatcag gcattaccca tagagtcggg aagaggtttt 660 gtgtgaagtc catatatata ttgggcaaga tctggatgga tgagaatgtc aagaagcaaa 720 atcatacgaa ccatgttatg ttcttccttg ttcgagatag aaggccatat ggtccgagtc 780 cgcaagattt tggacaagtg ttcaacatgt ttgataatga acctactacg gcaactgtga 840 agaatgatct tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttgttggtg 900 gaccctctgg gatgaaggaa caagcgttgg tgaagaggtt ttttaggatc aataatcatg 960 tagtgtataa tcatcaggaa caggccaagt atgagaatca tactgagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcgaatc ctgtgtacgc tacgctgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttgaattt tattacatgt tgctccgtaa 1140 cttggagtgt gtttagtaat acatcgtaca gaacatgatc aacagcttga agtacagtgt 1200 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta aagactctta 1260 agaaaagacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatccccaa tgccttccgg atgttgtggt tgaaccgtat ctggagtgtg atgatgtcgt 1380 ggttcatgtt ccctggcctc ttgtcgtggt tggtgatttc gaaatagagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttccttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtc gatatggaga tagaatgagc agccgcattc gaggtctacc 1560 cgtctacgtc tgacggccct ggccttcgct gtgcggtgtt ggactttgat gggcactaga 1620 gaacaatggc tcgtggatgg tgatgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctggttcttt tcctcgtcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aattggcttc ccgtactttg tattgctttg 1800 ccagtctctt tgggccccca tgaattcttt gaagtgtttg aggtagtggg ggtcgacgtc 1860 atcaatgacg ttgtaccagg cgtcgttgct gtagaccttt ggactaagat ccaagtgtcc 1920 acacaagtag ttgtgtggtc ccagagagcg ggcccacatc gtcttccccg tcctactatc 1980 gccctcgatg acgatactac tcggtctcca tggccgcgca gcggaaccca tcacgttgtc 2040 ggaaacccaa tcttcaagtt cctcaggaac attagtgaaa gaagaagaaa gaaatggaga 2100 aacataagga gtcagaggct cttgaaaaat cctatctaaa ttgctattta aattatgaaa 2160 ctgtaaaaca aaatcttttg gagcgagttc ccttattaca ttaagagcct ctgacttatt 2220 tgctgagtta agagccttgg cgtaagcgtc attggcggat tgttgtcccc ctcgagcaga 2280 tcgtccgtcg atctgaaact tgccccattg gatggtgtct ccgtccttgt ccatatagga 2340 ttggacgtcg gagctggatt tagctccctg aatgtttgga tggaaatgtg ctgaccggga 2400 aggggatatg aggtcgaaaa atcgattgtt ggtacaattg tacttgccct cgaactgaat 2460 gagggcatgc agatgaggtt ccccattttc atggagttct ctgcagatct tgatgaacaa 2520 tttatttgtt ggggtttgga gtcgtcggag ctgagccaat gcctcttctt ttgatagaga 2580 gcatttggga tatgtcagga aatagttttt ggctttgatg ctaaaacgac cagcccttgg 2640 cattttcgct gtcgtatagc aatcgggggg cactcaaagt ctgtagcaat cgggggaaat 2700 ggggggcaat ttatatgatg ccccctaaat ggcatttatg taatatcctc attgaatttg 2760 aaattcaaac gtggaaagcg gccatccgta taatatt 2797 //