ID AJ717580; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC AJ717580; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 5) XX DE East African cassava mosaic Kenya virus segment DNA A, complete sequence, DE isolate EACMKV-[K300] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2798 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; ec597c07722be7b96ca0340bd10d0dd3. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMKV-[K300]" FT /mol_type="genomic DNA" FT /country="Kenya:Machakos, Kathiana/Kakuyuni" FT /clone="K300FA-2[2002]" FT /db_xref="taxon:393599" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A898" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A898" FT /protein_id="CAJ78322.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A897" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A897" FT /protein_id="CAJ78323.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIRKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A896" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A896" FT /protein_id="CAJ78324.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQMLQYLDMIGVISINT FT VLQAVDHVLYDVLLNTIQVTEQHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A895" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A895" FT /protein_id="CAJ78325.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQETREHEPRHHHTPDTVQPQ FT HPEGIGDSQVFSQLQGLDDLTASDWSFLKSL" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A894" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A894" FT /protein_id="CAJ78326.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFIK FT ICRELHGNGEPHLHALIQFEGKYNCTNPRFFDLISPSRSAHFHPNIQGAKSSSDVKSYM FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLAPYVSPFLSSSFTHVPEELEAWVSDNVMGSAARPWRPSSIVIEGD FT SRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSGAHQSPTPHSEDQGRQT" FT CDS complement(2197..2736) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A893" FT /protein_id="CAJ78327.1" FT /translation="MPFRGHHINCPPIPPIATDFECPPIAIRQRKCQGLVVLASKPKTI FT SSHIPNALYPKRRHWIRSDNSKPQPINCSSRSAENSMGMGNLICMPLFSSRASTIVPTH FT DSSTSYPLPGQHISIQTFRELNPAPTSSPIWTRTETPSNGASFRSTDDLLEEDNNQPMT FT LTPRLLTQQISQRLLM" XX SQ Sequence 2798 BP; 718 A; 565 C; 729 G; 786 T; 0 other; accggatggc cgcgcccgaa aaagcaggta gaccccacaa gatagccgcg cccgtgaaag 60 acagtggtcc ccgcgcactt gtattggttg gccagtcata ttcacgcgtg aaagtctaga 120 tatttggtgt gtgtctttat agacttcgtc gcgaagtagt tgagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatatttgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 300 gtgatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggtgcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtc 600 cgatgtgtta gtgatgttac tcgtggatca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caggaagcaa 720 aatcatacga accatgttat gttcttcctc gttcgagata gaaggcctta tggtccgagt 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tccatgcgac tgttgttggt 900 ggaccctccg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttatatatgg catgtacaca tgcctcgaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggatcg tgtttagtaa tacatcgtac agaacatgat caacagcttg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tactggagca tttgatatct aaagactctt 1260 aagaaacgac cagtctgagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggtct cttgtcgtgg ttggtgatgt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcacctg 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcctcgtcc agaaactctt tataggatga tgttggtcct ggattgcaga 1740 ggaatatagt gggaatgccg cctttaattt gaatgggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgttac tgtagacctt tggactaaga tccagatgtc 1920 cacacaagta gttgtgtggt cccagagatc gggcccatat cgtcttccct gtcctactat 1980 cgccctcgat gacgatacta ctgggtctcc atggccgcgc agcggaaccc atcacgttgt 2040 cggaaaccca agcttcaagt tcctcaggaa cgtgagtgaa agaagaagaa agaaagggag 2100 aaacataagg agctagaggc tcttgaaaaa tcctatctaa attgctattt aaattatgaa 2160 actgtaaaac aaaatctttt ggagctagtt cccttattac attaagagcc tctgacttat 2220 ttgctgagtt aagagccttg gcgtaagcgt cattggctga ttgttgtcct cctcgagcag 2280 atcgtccgtc gatctgaaac tcgccccatt ggatggtgtc tccgtccttg tccatatagg 2340 acttgacgtc ggagctggat ttagctccct gaatgtttgg atggaaatgt gctgaccggg 2400 aaggggatat gaggtcgaag aatcgtgggt tggtacaatt gtacttgccc tcgaactgaa 2460 taagggcatg cagatgaggt tccccattcc catggagttc tctgcagatc ttgatgaaca 2520 atttattggt tggggtttgg agttgtcgga tctgatccaa tgcctcctct ttggatagag 2580 agcatttggg atatgtgagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2640 gcattttcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaat 2700 gggggggcaa tttatatgat gccccctaaa tggcatttat gtaatatcct cattgaattt 2760 gaatttgaaa cgcgtaaagc ggccatccgt ataatatt 2798 //