Dbfetch
ID AJ717575; SV 1; circular; genomic DNA; STD; VRL; 2797 BP. XX AC AJ717575; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 5) XX DE East African cassava mosaic Kenya virus segment DNA A, complete sequence, DE isolate EACMKV-[K310] XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; AC1 protein; KW AC2 protein; AC3 protein; AC4 protein; AV1 protein; AV2 protein. XX OS East African cassava mosaic Kenya virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus. XX RN [1] RP 1-2797 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; eb236257c01f81d77dbab214018e214f. XX FH Key Location/Qualifiers FH FT source 1..2797 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMKV-[K310]" FT /mol_type="genomic DNA" FT /country="Kenya:Machakos, Matuu/Kithendu" FT /clone="K310FA-1[2002]" FT /db_xref="taxon:393599" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8C8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8C8" FT /protein_id="CAJ78292.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQTHVS FT EAQDVQNVSKPRCP" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8A9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8A9" FT /protein_id="CAJ78293.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENVKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8C6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8C6" FT /protein_id="CAJ78294.1" FT /translation="MDSRTGELITAPQARNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VLHAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8C5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8C5" FT /protein_id="CAJ78295.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8C4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8C4" FT /protein_id="CAJ78296.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNPRFFDLISPSRSAHFHPNIQGAKSSSDVQSYM FT DKDGDTIQWGTFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLHSNLDRIFQEPLTPYVSPFLSSSFTNVPEELEVWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKAFLDEEKNQSLKAWALKNATFITINEPL FT FSSAHQSPTPHSEDQGRQT" FT CDS complement(2197..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8C3" FT /protein_id="CAJ78297.1" FT /translation="MGNLICMPSFSSRANTIVPILDSSISYPLPGQHISIQTFRELNQA FT PTSSPIWTRTETPSNGARFRSTDDLLEEDNNQPMTLTPRLLIQQISQRLLM" XX SQ Sequence 2797 BP; 720 A; 563 C; 728 G; 786 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacag gatggccgcg cccgtgaaag 60 aaagtggtcc ctgcgcactt gttttggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgacttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggtttta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa cagacccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgttaagt ccatatatat attgggcaag atctggatgg atgagaatgt caaaaagcaa 720 aatcacacga accatgtgat gttcttcctc gtgcgagata gaaggccgta tggtccgagt 780 cctcaagatt ttgggcaagt gttcaacatg tttgataatg aaccaactac tgcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgtggttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctctaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttttatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagcg tgtttagtaa tacatcgtac agaacatgat caacagcgtg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagaccc tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attccttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactag 1620 agaacaatgg ctcgttgatg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcctcgtcc agaaacgctt tatatgatga tgttggtccg ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtctct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgttgc tgtagacctt tggactaaga tccaggtgtc 1920 cacacaagta gttgtgtggt cccagagagc gggcccacat cgtcttcccc gtcctactat 1980 cgccctcgat gacgatacta ctcggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cggaaaccca aacttcaagt tcctcaggaa cgttagtgaa agaagatgaa agaaatggag 2100 aaacataagg agtcagaggc tcttgaaaaa tcctatctaa attgctatgt aaattatgaa 2160 actgtaaaac aaaatctttt ggagctagtt cgcgtattac attaagagcc tctgacttat 2220 ttgctgaatt aagagccttg gcgtaagcgt cattggctga ttgttgtcct cctcgagcag 2280 atcgtccgtc gatctgaaac gtgccccatt ggatggtgtc tccgtccttg tccatatagg 2340 actggacgtc ggagcttgat ttagctccct gaatgtttgg atggaaatgt gctgaccggg 2400 aaggggatat gagatcgaag aatcgaggat tggtacaatt gtatttgccc tcgaactgaa 2460 tgagggcatg cagatgaggt tccccatttt catggagttc tctgcagatc ttgatgaaca 2520 atttatttgt tggggtttgg agttgtcgga tttgatctaa tgcctcctct ttggatagag 2580 agcatttggg atatgttagg aaatagtttt tggctttgat gctaaaacga ccagcccttg 2640 gcattttcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaaa 2700 ggggggcaat ttatatgatg ccccctaaat ggcatttatg taatatcctc attgaatttg 2760 aaattcaaac gtgtaaagcg gccatccgta taatatt 2797 //