ID AJ717571; SV 1; circular; genomic DNA; STD; VRL; 2796 BP. XX AC AJ717571; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 5) XX DE East African cassava mosaic Kenya virus segment DNA A, complete sequence, DE isolate EACMKV-[K304] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic Kenya virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2796 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 6e7e470700a788601b573b42050202ca. XX FH Key Location/Qualifiers FH FT source 1..2796 FT /organism="East African cassava mosaic Kenya virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMKV-[K304]" FT /mol_type="genomic DNA" FT /country="Kenya:Machakos, Tala" FT /clone="K304FA-1[2002]" FT /db_xref="taxon:393599" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8C8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8C8" FT /protein_id="CAJ78268.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQTHVS FT EAQDVQNVSKPRCP" FT CDS 334..1107 FT /pseudo FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8F0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8F0" FT /protein_id="CAJ78270.1" FT /translation="MDSRTGELITAPQARNGVFTWEITNPLYFEITNHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGLFLRVFRYQVLKYLDMIGVISINT FT VLQAVAHVMYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8E9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8E9" FT /protein_id="CAJ78271.1" FT /translation="MPPSSPSTSHCSIVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHEPRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8E8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8E8" FT /protein_id="CAJ78272.1" FT /translation="MPRAGRFGIKAKNYFLTYPKCSLSKEEALDQIRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNHRFFDLISPSRSAHFHPNIQGAKSSSDVQSYM FT DKDGDTIQWGKFQIDGRSARGGQQSANDAYAKALNSANKSEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPLHPYVSPFLSSSFTNVPEELEDWVSENVMGSAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FYSAHQSPTPHSEDQGRQT" FT CDS complement(2197..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8E7" FT /protein_id="CAJ78273.1" FT /translation="MGNLICMPSFSSRASTIVPTIDSSTSYPHPGPPTSIQTFRELNQA FT PTSSPIWTRTETPSNGASFRSTDDLLEEDNNQPMTLTPRLLTQQISQRLLM" XX SQ Sequence 2796 BP; 715 A; 566 C; 733 G; 782 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacag tatggccgcg cccgtgaaag 60 aaagtggtcc ctgcgcactt gttttggtcg gccagtcata ttcacgcgtg aaaggctaga 120 tatttgttgt ttgtctttat agacttcgtc gcgaagtagt ggagcgcgtt aacatgtggg 180 atccattgtt gaacgacttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg accgcggtac tgtcggggcg gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa cagacccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg ttaagcacac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgttaagt ccatatatat attgggcaag atctggatgg atgagaatgt caagaagcaa 720 aatcacacga accatgtgat gttcttcctc gtttgagata gaaggccgta tggtccgagt 780 cctcaagatt ttgggcaagt gttcaacatg tttgataatg aaccaactac tgcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgtggttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgccgctaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttttatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagcg tgtttagtaa tacatcgtac ataacatgag caacagcttg aagtacagtg 1200 ttaatggaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactctt 1260 aagaaaagac cagtctgagg ccgtaaggtc gtccagaccc tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tggttcatgt tccctggcct cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attccttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgacggccc tggtcttcgc tgtgcggtgt tggactttga tgggcactat 1620 agaacaatgg ctcgtggagg gtgatgaagg tggcattctt taaagcccag gctttaaggg 1680 actggttctt ttcctcgtcc aaaaactctt tatatgatga tgttggtccg ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaatgggctt cccgtacttt gtattgcttt 1800 gccagtctct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgttgc tgtagacctt tggactaaga tccaggtgtc 1920 cacacaagta gttgtgtggt cccagagagc gggcccacat cgtcttcccc gtcctactat 1980 cgccctcgat gacgatacta ctaggtctcc atggccgcgc agcggaaccc atcacgttct 2040 cggaaaccca atcttcaagt tcctcaggaa cgttagtgaa agaagatgaa agaaatggag 2100 aaacataagg atgcagaggc tcttgaaaaa tcctatctaa attgctattt aaattatgaa 2160 actgtaaaac aaaatccttt ggagctagtt cgcgtattac attaagagcc tctgacttat 2220 ttgctgagtt aagagccttg gcgtaagcgt cattggctga ttgttgtcct cctcgagcag 2280 atcgtccgtc gatctgaaac ttgccccatt ggatggtgtc tccgtccttg tccatatagg 2340 actggacgtc ggagcttgat ttagctccct gaatgtttgg atggaagtgg gcggaccggg 2400 atggggatat gaggtcgaag aatcgatggt tggtacaatt gtacttgccc tcgaactgaa 2460 tgagggcatg cagatgaggt tccccatttt catggagttc tctgcagatc ttgatgaaca 2520 atttatttgt tggggtttgg agttgtcgga tttgatccaa tgcctcctct ttggatagag 2580 agcatttggg atatgttagg aaatagtttt tggctttgat gccaaaacga ccagcccttg 2640 gcattttcgc tgtcgtatag caatcggggg gcactcaaag tctgtagcaa tcgggggaaa 2700 ggggggcaat ttatatgatg ccccctaaat ggcatttatg taaatcctca ttgaatttga 2760 aattcaaacg tggaaagcgg ccatccgtat aatatt 2796 //