ID AJ717560; SV 1; circular; genomic DNA; STD; VRL; 2784 BP. XX AC AJ717560; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic Zanzibar virus segment DNA A, complete DE sequence, isolate EACMZV-[K3] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic Zanzibar virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2784 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; cbee826d4d131d6242d8dc5e3ea6c4f5. XX FH Key Location/Qualifiers FH FT source 1..2784 FT /organism="East African cassava mosaic Zanzibar virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMZV-[K3]" FT /mol_type="genomic DNA" FT /country="Kenya:Kilifi, Kwakadzengo" FT /clone="K3AFA-9[2001]" FT /db_xref="taxon:223275" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8I1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8I1" FT /protein_id="CAJ78202.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVP FT EAQDVQNVSKPRCP" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8L6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8L6" FT /protein_id="CAJ78203.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHIGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPQEFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8L5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8L5" FT /protein_id="CAJ78204.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFAITNHDKRPGNMNHDI FT ITIQIRFNHNIRKALGIHKCFLNFKVWTTLRPQTGLFLRVFRSQVLKYLNMIGVISINT FT VLQSVDHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8L4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8L4" FT /protein_id="CAJ78205.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAIRRRRVDLECGCSFYIHI FT NCINHGFSHRGTHHCASSNEWRFYLGNNKSPIFRNHQPRQEAREHEPRHHHNPDTVQPQ FT HTEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8L3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8L3" FT /protein_id="CAJ78206.1" FT /translation="MTPPKRFKIQAKNYFLTYPKCSLSKHEALSQILNLPTPTNKKYIK FT VCREIHDDGQPHLHMLIQFEGKFSCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTTEWGEFQIDARSARGSCHTANDACAEALNSGSKAAALLIIKEKLPKEFIFQYH FT NLSSNLDKIFQEPPAPYVSPFLSSSFTNVPEELEVWVSENVMGSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTLHEPL FT FSSAHQSPTPHSEDQGHQT" FT CDS complement(2229..2486) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8L2" FT /protein_id="CAJ78207.1" FT /translation="MGNLISTCLFSSKANSHAQISDSSTWYPPHDPHISIRTFKELNPA FT PTSSPTSTKMGIPLSGANSRSTPDRLEAAATLLMTHVPKH" XX SQ Sequence 2784 BP; 729 A; 546 C; 718 G; 791 T; 0 other; accggatggc cgcgcccgaa aaagaaggtg gaccccacgg atggccacgc ccatgaaaga 60 aagtggtccc cgcgcacctg tttcggtcag ccagtcatat tcacgcgtgg aagtctagat 120 atttgttgtt tggctttata gacttcgtcg cgaagtagtg gagcgcgtca acatgtggga 180 tccattgtta aacgatttcc ctgaaaccgt tcacggtttc cgttccatgc ttgctgttaa 240 atacctgtta catcttgaac aggaatacga tcgcggtact gtcggggcag agtacatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 accggaagcc caagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggatgatgt taagcacatt ggtatggtcc 600 gatgtgtcag tgatgttact cgtgggtcag gcattaccca tagagtcggg aagaggttct 660 gtgtgaagtc catatatata ttgggcaaga tctggatgga tgagaatata aagaagcaga 720 accatacgaa ccaggttatg ttcttcctcg tgcgagatag aaggccgtat ggtcctagtc 780 cgcaagagtt tggacaagtg ttcaacatgt ttgataatga acctacaact gcaacggtga 840 agaatgatct tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttgttggtg 900 gaccctctgg gatgaaggaa caagctctgg ttaagaggtt ttttaggatc aataatcatg 960 tagtgtataa tcatcaggaa caggccaagt atgagaatca tacggagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtatgc tactctgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttgaattt tattgcatgt tgctccgtaa 1140 cctggagcgt gtttagtaat acatcgtaca gaacatgatc aacagattga agtacagtgt 1200 taatggaaat aacgcctatc atatttaaat acttgagcac ttgagatcta aatactctta 1260 agaaaagacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatccccaa tgccttccgt atgttgtggt tgaaccgtat ctggattgtg atgatgtcgt 1380 ggttcatgtt ccctggcctc ttgtcgtggt tggtgattgc gaaatatagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttcgttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtt aatatggata tagaacgagc agccgcactc gaggtctact 1560 cgcctacgtc tgatggccct ggtcttcgct gtgcggtgtt ggactttgat gggcacttga 1620 gaacaatggc tcgtggaggg tgacgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctggttcttt tcctcatcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aatcggcttc ccgtactttg tattgctttg 1800 ccagtcccgt tgggccccca tgaattcttt gaagtgtttg aggtagtggg ggtcgacgtc 1860 atcaatgacg ttgtaccagg cgtcgttgct gtagaccttt ggactgagat ccaggtgtcc 1920 acacaaataa ttatgtggtc ccaatgacct ggcccacatt gtcttccctg tacgactatc 1980 accctcaata acaatactgt tgggtctcca aggccgcgca gcggaaccca tcacgttttc 2040 ggaaacccag acttcaagtt cctcaggaac gttagtaaaa gaagaagaca gaaaaggaga 2100 aacataagga gctggtggct cttgaaaaat cttatctaaa ttactgctta agttatgata 2160 ttgaaaaatg aattcttttg ggagtttctc cttaataatt agaagtgctg ctgcctttga 2220 acctgagttt aatgcttcgg cacatgcgtc attagcagtg tggcagctgc ctctagccga 2280 tctggcgtcg atctggaatt cgccccactc agtggtatcc ccatctttgt cgatgtagga 2340 cttgacgtcg gagctggatt tagctccttg aatgttcgga tggaaatgtg tggatcgtgt 2400 gggggatacc aggtcgaaga atcgcttatt tgtgcatgag aatttgcctt cgaactgaat 2460 aagcatgtgg agatgaggtt gcccatcgtc gtgaatttct ctgcacactt tgatgtattt 2520 cttgtttgtg ggagttggga ggtttaatat ttgggataat gcttcgtgtt tagagagaga 2580 acatttggga tatgtgagaa aatagttttt ggcctgtatc ttaaaacgct tggggggagt 2640 catttatgcg agagcaattg gagacacctc ggttgatgtc tctactgaat tggagacaat 2700 atatagtgtc tctaaatggc ataatggtaa ttaggtagat ctattttcaa aatttgaacc 2760 aaaagcggcc atccgtataa tatt 2784 //