ID AJ717559; SV 1; circular; genomic DNA; STD; VRL; 2784 BP. XX AC AJ717559; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic Zanzibar virus segment DNA A, complete DE sequence, isolate EACMZV-[K5] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic Zanzibar virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2784 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 951e520818eb37ea5bbbe0ee9e1823dc. XX FH Key Location/Qualifiers FH FT source 1..2784 FT /organism="East African cassava mosaic Zanzibar virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMZV-[K5]" FT /mol_type="genomic DNA" FT /country="Kenya:Kilifi, Vipingo" FT /clone="K5FA-23[2001]" FT /db_xref="taxon:223275" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8M3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8M3" FT /protein_id="CAJ78196.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQTMGQQAHVP FT EAQDVQNVSKPRCP" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8M2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8M2" FT /protein_id="CAJ78197.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKLWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSGVTRGSGITHR FT VGKRFCVKSIYILGKVWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8M1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8M1" FT /protein_id="CAJ78198.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFAITNHDKRPGNMNHDI FT ITIQIRFNHNIRKALGIHKCFLNFQVWTTLQPQTGLFLRVFRSQVLKYLDMIGVISITT FT VLRSVDHVLYDVLLNTLQVAEHHAIKFNLY" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8M0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8M0" FT /protein_id="CAJ78199.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRAIRRRRVDLECGCSFYIHI FT NCINHGFSHRGTHHCASSNEWRFYLGNNKSPIFRNHQPRQEAREHEPRHHHNPDTVQPQ FT HPEGIGDSQVFSQLPGLDDLTASDWSFLKSI" FT CDS complement(1564..2643) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8L9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8L9" FT /protein_id="CAJ78200.1" FT /translation="MTPPRRFKIQAKNYFLTYPKCSLSKHEALSQILNIPTPTNKKYIK FT VCRELHDDGQPHLHMLIQFEGKFSCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTTEWGEFQIDARSARGGCHNANDACAEALNSGSKAAALLIIKEKLPKEFIFQYH FT NLSSNLDKIFQEPPAPYVSPFLSSSFTNVPEELEVWVSENVMGSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFVTIHEPL FT FSSAHQSPTPHSEDQGHQT" FT CDS complement(2229..2486) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8L8" FT /protein_id="CAJ78201.1" FT /translation="MGNLISTCLFSSKANSHAQISDSSTWYPQHDQHISIRTFKELNPA FT PTSSPTSTKMGIPLSGANSRSTPDRLEAAATMLMTHVPKP" XX SQ Sequence 2784 BP; 724 A; 545 C; 723 G; 792 T; 0 other; accggatggc cgcgcccgaa aaagaaggtg gaccccacgg atggccgcgc ccatgaaaga 60 aagtggtccc cgcgcacttg tttcggtcag ccagtcatat tcacgcgtgg aagtctagat 120 atttgttttt tggctttaaa gacttcgtcg cgaagtagtg gagcgcgtca acatgtggga 180 tccattgtta aacgatttcc ctgaaaccgt tcacggtttc cgttccatgc ttgctgttaa 240 atacctgtta catcttgaac aggaatacga tcgcggtact gttggggctg agtatatacg 300 ggatctaata ggggttctac ggtgtaagag ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaact atgggccaac aggcccatgt 480 accggaagcc caagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggttcagtcg tatgaacaga gggatgatgt taagcacact ggtatggtcc 600 gatgtgtcag tggtgttact cgtgggtcag gcattaccca tagagtcggg aagaggttct 660 gtgtgaagtc catatatata ttgggcaagg tttggatgga tgagaatatc aagaagcaga 720 accatacgaa ccatgttatg tttttcctcg tgcgagatag aaggccgtat ggtccgagtc 780 cgcaagattt tggacaagtg ttcaacatgt ttgataatga acctactacg gcaactgtga 840 agaatgatct tagggaccgg tatcaggtgt tacgtaaatt ctatgcgact gttgttggtg 900 gaccctctgg gatgaaggaa caagctctgg ttaagaggtt ttttaggatc aataatcatg 960 tagtgtataa tcatcaggaa caggccaagt atgagaatca tactgagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcaaatc ctgtgtatgc gactctgaaa atacgcatct 1080 atttctatga tgcagtgaca aattaataaa ggttgaattt tattgcatgg tgctccgcaa 1140 cttggagcgt gttgagtaat acatcgtaca gaacatgatc aacagatcga agtacagtgg 1200 taatggaaat aacgcctatc atatctaaat acttgagcac ttgggatcta aatactctta 1260 agaaaagacc agtctgaggc tgtaaggtcg tccagacctg gaagttgaga aaacacttgt 1320 gaatccccaa tgccttccgg atgttgtggt tgaaccgtat ctggattgtg atgatgtcgt 1380 ggttcatgtt ccctggcctc ttgtcgtggt tggtgattgc gaaatatagg ggatttgtta 1440 tttcccaggt aaaaacgcca ttcgttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtt aatatggata tagaacgagc agccgcattc gaggtctacc 1560 cgcctacgtc tgatggccct ggtcttcgct gtgcggtgtt ggactttgat gggcacttga 1620 gaacaatggc tcgtggatgg tgacgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ctggttcttt tcctcatcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aattggcttc ccgtattttg tattgctttg 1800 ccagtcccgt tgggccccca tgaattcttt gaagtgtttg aggtagtggg ggtcgacgtc 1860 atcaatgacg ttgtaccagg cgtcgttgct gtagaccttt ggactgagat ccaggtgtcc 1920 acacaaataa ttatgtggtc ccaatgacct ggcccacatt gtcttccctg tacgactatc 1980 accctcaata acaatactgt tgggtctcca aggccgcgca gcggaaccca tcacgttctc 2040 ggaaacccag acttcaagtt cctcaggaac gttagtaaaa gaagaagaca gaaaaggaga 2100 aacataagga gctggtggct cttgaaaaat cttatctaaa ttactactta agttatgata 2160 ttgaaaaata aattcttttg ggagtttctc cttaataatg agaagtgctg ctgccttgga 2220 accggagttt aaggcttcgg cacatgcgtc attagcattg tggcagccgc ctctagccga 2280 tctggcgtcg atctggaatt cgccccactc agtggtatcc ccatctttgt cgatgtagga 2340 cttgacgtcg gagctggatt tagctccttg aatgttcgga tggaaatgtg ttgatcgtgt 2400 tggggatacc aggtcgaaga atcgcttatt tgtgcatgag aatttgcctt cgaactgaat 2460 aagcatgtgg agatgaggtt gcccatcgtc gtgaagttct ctgcacactt tgatgtattt 2520 cttgtttgtg ggagttggga tgtttaatat ttgggataat gcttcgtgtt tagatagaga 2580 acatttggga tatgtgagaa aatagttttt ggcctgtatt ttaaaacgcc tggggggagt 2640 catttatgcg agagcaattg gagacacctc ggtggatgtc tctactgaat tggagacaat 2700 atatagtgtc tctaaatggc ataagggtaa ttagttagat ctattttcaa aatttgaacc 2760 aaaagcggcc atccgtataa tatt 2784 //