ID AJ717552; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC AJ717552; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus segment DNA A, complete sequence, isolate DE EACMV-[K35] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2801 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; bdaec7c1821a07441dbdfab9ebed361c. DR EuropePMC; PMC3163225; 21812981. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-[K35]" FT /mol_type="genomic DNA" FT /country="Kenya:Kwale, Shirachi" FT /clone="K35FA-5[2001]" FT /db_xref="taxon:62079" FT CDS 174..530 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8N5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8N5" FT /protein_id="CAJ78154.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCP" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q77FU8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q77FU8" FT /protein_id="CAJ78155.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQALVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8R2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8R2" FT /protein_id="CAJ78156.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFEITNHDKRPGNMTHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VLQAVEHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8R1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8R1" FT /protein_id="CAJ78157.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKSRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRNHQPRQEAREHDPRHHHTPDTVQPQ FT PPEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8R0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8R0" FT /protein_id="CAJ78158.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKAFSYPTNIKFIR FT VCREVHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGVFQVDARSARGEGQHLAQVYADALNASSKTEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPQELEVWVSENVCSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLYNPGPTSSYKEFLEEEKNQSLKAWALKNATFITLYEPL FT FSSAHQSPTPHSEEQGTQT" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8Q9" FT /protein_id="CAJ78159.1" FT /translation="MGCLISMFSSNLKASSNVPTPDSSISFPHPDQHISIRTFRALNHR FT PMSRLTLKREGNFLTMEFSKSMPEVPGGRASI" XX SQ Sequence 2801 BP; 734 A; 553 C; 726 G; 788 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacag gatggatgca ctcgtgaaag 60 aaagtggtcc ccgcgcactt gtgttggtcg gccagtcata ttcacgcgtg aaaggctaga 120 tatttgtggt ttgactttat atacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt gaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg atcgcggtac tgtcggggct gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtccctaa gggctgtgaa 540 ggcccatgta aggttcagtc gtatgaacag agggatgatg ttaagcatac tggtatggtc 600 cgatgtgtca gtgatgttac tcgtgggtca ggcattaccc atagagtcgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgtgat gttctttctc gttcgagata gaaggcctta tgggccgagc 780 cctcaagact ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tttatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaagctctg gttaagaggt tttttaggat taataatcat 960 gtagtgtata atcatcaaga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttgtatatgg catgtacaca tgcctcaaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tatttagtaa tacatcgtac agaacatgct caacagcctg aaggacagtg 1200 ttaattgaaa taacgcctat catatctaaa tacttgagca cctgatatct aaatactttt 1260 aagaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg gaggttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tgggtcatgt tccctggcct cttgtcgtgg ttggtgattt cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attctttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgagtgccc tgctcttcgc tgtgcggtgt tggactttga tgggcacttg 1620 agaacaatgg ctcgtagagg gtgatgaagg tggcattctt taaagcccag gctttaagag 1680 actgattctt ttcctcttcc agaaactctt tatatgatga tgttggtcct ggattgtaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgtttg aatatatctt tggagacaga tccaggtgtc 1920 cacacaaata attatgtggg cccagtgaac gagcccacat ggtcttcccg gttcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catacatttt 2040 cggataccca tacttctagt tcctgtggga cttgtgtaaa tgaggatgat aagaacggac 2100 taacgtaagt ttggggcgga gcctggaaga ttctatctgc gttagcagat atgttatgga 2160 actgtaaaaa aaaagacttt ggatcttttt ctttgataat ttgaagagct tcggttttag 2220 aagaagcatt caacgcgtct gcatatacct gagctaaatg ctggccctcc ccccgggcac 2280 ttcgggcatc gacttggaaa actccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ccttgacatc ggacgatgat ttagcgccct gaatgttcgg atggaaatgt gttgatcggg 2400 atggggaaat gagatcgaag aatctggggt tggtacattg gaacttgcct tcaaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtacttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa aaggctttta attgggaaag ggcctcttcc tttgttaacg 2580 agcatcgggg ataggttatg aaataatttt tggcatttat ttgaaaacga ccggctcttg 2640 gcatatttgc tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg 2700 gggggcatta tataggatgt cccccaatgg catatgtgta aataggtaga tgtccattca 2760 aaatttgaat tgcgaatact ggcggccatc cgattaatat t 2801 //