Dbfetch
ID AJ717547; SV 1; circular; genomic DNA; STD; VRL; 2801 BP. XX AC AJ717547; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus segment DNA A, complete sequence, isolate DE EACMV-[K312] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2801 RA Bull S.E.; RT ; RL Submitted (19-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; f78f2dfea61aa36196ad8a30407bc04e. XX FH Key Location/Qualifiers FH FT source 1..2801 FT /organism="East African cassava mosaic virus" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-[K312]" FT /mol_type="genomic DNA" FT /country="Kenya:Machakos, Migwani/Tiuuni" FT /clone="K312FA-2[2002]" FT /db_xref="taxon:62079" FT CDS 174..539 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2A8U4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2A8U4" FT /protein_id="CAJ78124.1" FT /translation="MWDPLLNDFPETVHGFRSMLAVKYLLHLEQEYDRGSVGAEYIRDL FT IGVLRCKSYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT EAQDVQNVSKPRCPEGL" FT CDS 334..1107 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:Q2A8U3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q2A8U3" FT /protein_id="CAJ78125.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGMVRCVSDVTRGSGITHR FT VGKRFCVKSIYILGKIWMDENIKKQNHTNHVMFFLVRDRRPYGPSPQDFGQVFNMFDNE FT PTTATVKNDLRDRYQVLRKFYATVVGGPSGMKEQSLVKRFFRINNHVVYNHQEQAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1104..1508) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:Q2A8U2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2A8U2" FT /protein_id="CAJ78126.1" FT /translation="MDSRTGELITAPQATNGVFTWEITNPLYFAITNHDKRPGNMTHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLKVFRYQVLKYLDMIGVISINT FT VLQAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1249..1656) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:Q2A8U1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q2A8U1" FT /protein_id="CAJ78127.1" FT /translation="MPPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSNEWRFYLGNNKSPLFRNHQPRQEAREHDPRHHHTPDTVQPQ FT HSEGIGDSQVFSQLQGLDDLTASDWSFFKSI" FT CDS complement(1565..2644) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:Q2A8U0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q2A8U0" FT /protein_id="CAJ78128.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLKAFSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDDGIFQVDARSARGEGQHLAQVYAEALNASSKSEALQIIKEKDPKSFFLQFH FT NISANAGRIFQAPPQTYVSPFLSSSFTQVPEEIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLEEEKNQSLKAWALKNATFVTLYEPL FT FSSANQSPTPHSEDQGTQT" FT CDS complement(2254..2487) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q2A8R5" FT /protein_id="CAJ78129.1" FT /translation="MGCLISMFSSNSKASSNVPTPDSSISFPHPDQHISIRTFRELNHR FT PMSRLTLKREGNFLTMEFSKSMPEVPGGRASI" XX SQ Sequence 2801 BP; 732 A; 553 C; 722 G; 794 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccaccg gatggccgca ctcgtgaaag 60 aaagtggtcc ccgcgcactt gtttcggtcg gccagtcata ttcacgcgtg aaagtctaga 120 tatttctggt ttgactttat atacttcgtc gcgaagtagt ggagcgcgtc aacatgtggg 180 atccattgtt aaacgatttt cccgaaaccg ttcacggttt ccgttctatg cttgctgtta 240 aatacctgtt acatctggaa caggaatacg accgcggttc tgtcggggct gagtatatac 300 gggatctaat aggggttcta cggtgtaaga gttatgtcga agcgaccagg agatataata 360 atctcaacac ccgtatccaa ggtgcggagg aggctgaact tcgacagccc atacacgaac 420 cgtgttgttg cccccactgt ccgcgtcacc agaagcaaaa tatgggccaa caggcccatg 480 tatcggaagc ccaagatgta cagaatgtat cgaagcccag atgtcccgaa gggctgtgaa 540 ggcccatgta aggttcagtc ctatgaacag agggatgatg ttaagcatac gggtatggtc 600 cgatgtgtca gtgatgttac gcgtgggtca ggcattaccc atagagttgg gaagaggttt 660 tgtgtgaagt ccatatatat attgggcaag atctggatgg atgagaatat caagaagcaa 720 aatcatacga accatgttat gttctttctc gttcgagata gaaggcctta tggtccgagc 780 cctcaagatt ttggacaagt gttcaacatg tttgataatg aacctactac ggcaactgtg 840 aagaatgatc ttagggaccg gtatcaggtg ttacgtaaat tctatgcgac tgttgttggt 900 ggaccctctg ggatgaagga acaatcgctg gttaagaggt tttttaggat caataatcat 960 gtagtgtata atcatcagga acaggccaag tatgagaatc atactgagaa tgcgttgtta 1020 ttatatatgg catgtacaca tgcctcaaat cctgtgtacg ctacgctgaa aatacgcatc 1080 tatttctatg atgcagtgac aaattaataa aggttgaatt ttattgcatg ttgctccgta 1140 acttggagtg tgtttagtaa tacatcgtac agaacatgat caacagcttg aagtacagtg 1200 ttaattgaaa taacgcctat catatctaaa tacttgagca cttgatatct aaatactttt 1260 aaaaaaagac cagtcggagg ccgtaaggtc gtccagacct tgaagttgag aaaacacttg 1320 tgaatcccca atgccttccg aatgttgtgg ttgaaccgta tctggagtgt gatgatgtcg 1380 tgggtcatgt tccctggcct cttgtcgtgg ttggtgattg cgaaatagag gggatttgtt 1440 atttcccagg taaaaacgcc attcgttgct tgaggcgcag tgatgagttc ccctgtgcga 1500 gaatccatgg ttgatgcagt cgatatggag atagaacgag cagccgcatt cgaggtctac 1560 ccgcctacgt ctgagtgccc tggtcttcgc tgtgcggtgt tggactttga ttggcacttg 1620 agaacaatgg ctcgtagagg gtgacgaagg tggcattctt taaagcccag gctttaaggg 1680 actgattctt ttcctcttct agaaactctt tatatgatga agttggtcct ggattgcaga 1740 ggaagatagt gggaatgccg cctttaattt gaattggctt cccgtacttt gtattgcttt 1800 gccagtccct ttgggccccc atgaattctt tgaagtgttt gaggtagtgg gggtcgacgt 1860 catcaatgac gttgtaccag gcgtcgtttg aatatatctt tggagacaga tccaggtgtc 1920 cacataaata attatgtggg cccagtgaac gagcccacat ggtcttcccg gttcggctat 1980 caccttctag aacaatactg atcggtctcc atggccgcgc agcgggactg catatatttt 2040 cggataccca tacttcgatt tcctctggga cttgtgtaaa tgaggaggat aagaacggac 2100 taacgtaggt ttggggcgga gcctggaaga ttctacctgc gttagcagat atgttatgaa 2160 actgtaaaaa aaaggacttt ggatcttttt ccttgataat ttgaagagct tcggatttag 2220 aagaagcatt caacgcttct gcatatacct gagctaaatg ctggccctcc cccctggcac 2280 ttctggcatc gacttggaaa attccatcgt caagaaattc ccctcccttt tcaatgtaag 2340 ccttgacatc ggacgatgat ttagctccct gaatgttcgg atggaaatgt gttgatctgg 2400 atggggaaat gagatcgaag aatctggggt tggtacattg gaacttgcct tcgaattgga 2460 tgagaacatg gagatgaggc accccatcct gatgtagttc tctgcaaacc ctaatgaatt 2520 tgatattcgt cgggtaagaa aaggctttta attgggaaag ggcctcttcc tttgttagtg 2580 agcatcgggg ataggtgatg aaataatttt tggcatttat ttgaaaacga ccggctcgtg 2640 gcatatttgt tgtcgttttg gatcggggga cactcaaaac tccaggggaa cggtggaatg 2700 gggggcatta tataggatgt cccccaatgg catatgtgta aataggtaga tttccattca 2760 aaatttgaat tgcgaatatt ggcggccatc cgattaatat t 2801 //