ID AJ717529; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC AJ717529; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K79] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2799 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 0d5dc9a5245faa9793e1a20e0023523d. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K79]" FT /mol_type="genomic DNA" FT /country="Kenya:Bungoma, Nangeni" FT /clone="K79FA-2[2002]" FT /db_xref="taxon:375009" FT CDS 173..529 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A4CYS1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4CYS1" FT /protein_id="CAJ78016.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 333..1106 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:A4CYW9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4CYW9" FT /protein_id="CAJ78017.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNK FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1103..1507) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:A4CYX0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4CYX0" FT /protein_id="CAJ78018.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDRRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQYAIKFNLY" FT CDS complement(1248..1655) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A4CYS4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4CYS4" FT /protein_id="CAJ78019.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1659..2642) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:A4CYX2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4CYX2" FT /protein_id="CAJ78020.1" FT /translation="MPRAGRFQINAKNYFITYSRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVLMTSTPTTSNTSKNSWGPKETG FT KAIQNTGSPFKLKAAFPLSSSAIQDQHHHIKSFWTRERTNPLKPGL" FT CDS complement(2252..2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4CYX3" FT /protein_id="CAJ78021.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQEERASI" XX SQ Sequence 2799 BP; 733 A; 553 C; 729 G; 784 T; 0 other; accggatggc cgcgcccgaa aaaagcagat ggaccccaca atgaccgcgc ccgttaaaga 60 aagtggtccc tgcgcacttg ttttggtcgg ccagtcatat tcgcgcgtga aagtctagat 120 atttgttgtt tgtctttata gacttcgtcg cgaagtagta gagcgcgtca acatgtggga 180 tccattggtg aacgattttc ccgaaaccgt tcacggtttc cgttctatgc ttgccgttaa 240 atacctgtta catctggaac aggaatacga tcgcggtact gtcggggcgg agtatatacg 300 ggatctaata ggggttctac ggtgtaagaa ttatgtcgaa gcgaccagga gatataataa 360 tctcaacacc cgtatccaag gtgcggagga ggctgaactt cgacagccca tacacgaacc 420 gtgttgttgc ccccactgtc cgcgtcacca gaagcaaaat atgggccaac aggcccatgt 480 atcggaaacc caagatgtac agaatgtatc gaagcccaga tgtccctaag ggctgtgaag 540 gcccatgtaa ggtccagtcg tttgagcaga gggatgatgt gaagcacctt ggtatctgta 600 aggtgattag tgatgtgacg cgtgggcctg ggctgacaca cagggtcgga aagaggtttt 660 gtatcaagtc catttacatt cttggtaaga tctggatgga tgaaaatatt aagaagcaga 720 atcacactaa taatgtgatg ttttacctgc ttagggatag aaggccgtat ggcaatgcgc 780 cccaagactt tgggcagata tttaacatgt ttgataataa gcccagtact gcaacaatta 840 agaacgattt gagggatagg tttcaggtgt tgaggaaatt tcatgccact gttgttggtg 900 gtccatctgg catgaaggag caggcgttgg tgaaaaggtt ttacaagctg aatcatcacg 960 tgacatataa tcatcaggag gcagggaagt atgagaatca cacagagaat gcgttgttat 1020 tgtatatggc atgtacacat gcctcgaatc ctgtgtatgc tacgctgaaa atacgcatct 1080 atttttatga tgcagtgact aattaataaa ggttgaattt tattgcatat tgctccgtaa 1140 cttggagtgt gtttagtaat acatcgtaca caacatgatc aacagcttga aggacagtgt 1200 taatggaaat aacgcctatc atatctaaat acttgagcac ttgatatcta aatactctta 1260 agaaacgacc agtctgaggc cgtaaggtcg tccagacctt gaagttgaga aaacacttgt 1320 gaatccccaa tgccttccga aggttgtggt tgaaccgtat ctggagtgtg atgatgtcgt 1380 ggttcatgtt ccctggcctc ctgtcgtggt cggtgatttc gaaatagagg ggatttgtta 1440 tgtcccaggt aaaaacgcca ttccttgctt gaggcgcagt gatgagttcc cctgtgcgag 1500 aatccatggt tgatgcagtc gatatggaga tagaacgagc agccgcattc gaggtctacc 1560 cgcctacgtc tgacggccct ggtcttcgct gtgcggtgtt ggactttgat gggcactaga 1620 gaacaatggc tcgtggaggg tgatgaaggt ggcattcttt aaagcccagg ctttaaggga 1680 ttggttcttt ccctcgtcca gaaactcttt atatgatgat gttggtcctg gattgcagag 1740 gaagatagtg ggaatgccgc ctttaatttg aatgggcttc ccgtattttg tattgctttg 1800 ccagtctctt tgggccccca tgaattcttt gaagtgtttg aggtagtggg ggtcgacgtc 1860 atcaatacgt tgtaccaggc gtcgtttgaa tataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggactgca tatattttcg 2040 gatacccata cctctatgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat gttatggaac 2160 tgtaaaaaaa atgactttgg atctttttct ttaataattt gaagagcctc ggatttagac 2220 gaagcattta acgcgtctgc atatacctga gctaaatgct ggccctctcc tcttgcactt 2280 ctggcatcga cttggaaaag tccagcgtca agaaattccc ctcccttttc aatgtaagct 2340 ttgacatcgg acgatgattt agctccctga atgttcggat ggaaatgtgt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 atattcgtcg ggtacgaaag ggcttgtaat tgggaaaggg cctcttcttt tgttaatgag 2580 catcgggaat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc caggggaacg gtggaatggg 2700 gggcattata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaatgc cgaatattgg cggccatccg attaatatt 2799 //