ID AJ717526; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC AJ717526; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K67] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2798 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 0f05f00ce7cb8ae014eeac5c1e5e14e1. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K67]" FT /mol_type="genomic DNA" FT /country="Kenya:Butere, Mumias/Enjinja" FT /clone="K67FA-1[2002]" FT /db_xref="taxon:375009" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A4CYS1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4CYS1" FT /protein_id="CAJ77998.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQNVSKPRCP" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:A4CYV2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4CYV2" FT /protein_id="CAJ77999.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT AGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102..1506) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:A4CYT5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4CYT5" FT /protein_id="CAJ78000.1" FT /translation="MDSRTGELITAPQARNGVFTWDITNPLYFEITDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKVWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247..1654) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A4CYS4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4CYS4" FT /protein_id="CAJ78001.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGHNKSPLFRNHRPRQEAREHEPRHHHTPDTVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1563..2641) FT /pseudo FT /codon_start=1 FT /gene="AC1" FT /note="AC1 protein" FT CDS complement(2251..2484) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4CYV5" FT /protein_id="CAJ78003.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRGLNHR FT PMSKLTLKKEGNFLTLDFSKSMPEVQGERASI" XX SQ Sequence 2798 BP; 729 A; 554 C; 734 G; 781 T; 0 other; accggatggc cgcgcccgaa aaagcatgtg gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tttggtcggc cagtcatatt cgcgcgtgaa agtctagata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgttac atctggaaca ggaatacgat cgcggtactg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gaatgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggccggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg cgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagaccttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tggagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggtgatttcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgtgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg aggtctaccc 1560 gcctacgtct gacggccctg gtcttcgctg tgcggtgttg gactttgatg ggcactagag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccaggc tttaagggat 1680 tggttctttt cctcgtctag aaactcttta tatgatgatg ttggtcctgg attgcagagg 1740 aagatggtgg gaatgccgcc tttaatttga attggcttcc cgtattttgt attgctttgc 1800 cagtctcttt gggcccccat gaattctttg aagtgtttga ggtagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg gagacagacc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggactgca tatattttcg 2040 gatacccata cctctatgtc ctctgggact tgtgtaaaag aggatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt aagcagatat gttatggaac 2160 tgtaaaaaaa ggactttgga tctttttctt taataatttg aagagcctcg gatttagacg 2220 aagcattcaa cgcgtcggca tatacctgag ctaaatgctg gccctctccc cttgcacttc 2280 tggcatcgac ttggaaaagt ccagcgtcaa gaaattcccc tcctttttca atgtaagctt 2340 tgacatcgga cgatgattta gccccctgaa tgttcggatg gaaatgtgtt gatcgggatg 2400 gggaaatgag atcgaagaat ctcgggttgg tacattggaa cttgccttcg aattggatga 2460 gaacatggag atgaggcacc ccatcctgat gtagttctct gcaaacccta atgaatttga 2520 tattcgtcgg gtacgaaagg gcttgtaatt gggaaagggc ctcttctttt gttaatgagc 2580 atcggggata ggttatgaaa taatttctgg catttatttg aaaacgaccg gctcttggca 2640 tattggctgt cgttttggat cgggggacac tcaaaactcc aggggaacgg tggaatgggg 2700 ggcaatatat atgatgtccc ccaatggcat atgtgtaaat aggtagactt ccattcaaaa 2760 tttgaattcc gaatattggc ggccatccga ttaatatt 2798 //