ID AJ717520; SV 1; circular; genomic DNA; STD; VRL; 2799 BP. XX AC AJ717520; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K136] XX KW AC1 gene; AC1 protein; AC2 gene; AC2 protein; AC3 gene; AC3 protein; KW AC4 gene; AC4 protein; AV1 gene; AV1 protein; AV2 gene; AV2 protein. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2799 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 1508e402983d5efd27cd4267144036c4. XX FH Key Location/Qualifiers FH FT source 1..2799 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K136]" FT /mol_type="genomic DNA" FT /country="Kenya:Siaya, Sega" FT /clone="K136FA-2[2002]" FT /db_xref="taxon:375009" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A4CYP3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4CYP3" FT /protein_id="CAJ77962.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQTVSKPRCP" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:A4CYP4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4CYP4" FT /protein_id="CAJ77963.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102..1506) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:A4CYR7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A4CYR7" FT /protein_id="CAJ77964.1" FT /translation="MDSRAGELITAPQARNGVFTWDITNPLYFAIPDHDKRPGNMNHDI FT ITLQIRFNHNLRKALGIHKCFLNFKIWTTLRPQTGRFLRVFRYQVLKYLDMIGVISINT FT VLQAVDHVVYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1247..1654) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:A4CYR8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A4CYR8" FT /protein_id="CAJ77965.1" FT /translation="MPPSSPSTSHCSLVPIKVQHRTAKTRAVRRRRVDLECGCSFYLHI FT DCINHGFSRRGTHHCASSKEWRFYLGHNKSPLFRNPRPRQEAREHEPRHHHTTDTVQPQ FT PSEGIGDSQVFSQLQDLDDLTASDWSFLKSI" FT CDS complement(1563..2642) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:A4CYR9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4CYR9" FT /protein_id="CAJ77966.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKDEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGDFLDAGLFQVDARSARGEGQHLAQVYADALNASSKSEALQLIKKKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICRPAARPWRPISIVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQINGGIPTIFLCNPGPTSSYKAFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT CDS complement(2252..2485) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4CYS0" FT /protein_id="CAJ77967.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHIFIRTFRELNHR FT PMSKLTLKREGTFLTLDFSKSMPEVQGGRASI" XX SQ Sequence 2799 BP; 732 A; 553 C; 738 G; 776 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tgtggtcggc cagtcatatt cacgcgtgaa agtctagata 120 tttgttgtgt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgttac atctggaaca ggaatacgat cgcggtacgg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gactgtatcg aagcccagat gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagctga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg cgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct actcttaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagatcttg aagttgagaa aacacttgtg 1320 aatccccaat gccttccgaa ggttgtggtt gaaccgtatc tgtagtgtga tgatgtcgtg 1380 gttcatgttc cctggcctct tgtcgtggtc ggggattgcg aaatagaggg gatttgttat 1440 gtcccaggta aaaacgccat tccttgcttg aggcgcagtg atgagttccc ctgcgcgaga 1500 atccatggtt gatgcagtcg atatggagat agaacgagca gccgcattcg aggtctaccc 1560 gcctacgtct gacggccctg gtcttcgctg tgcggtgttg gactttgatg ggcactagag 1620 aacaatggct cgtggagggt gatgaaggtg gcattcttta aagcccaggc tttaagggat 1680 tggttctttt cctcgtccag aaatgcttta tatgatgatg ttggtcctgg attgcagagg 1740 aagatagtgg gaatgccgcc gttaatttga attggcttcc cgtatttggt attgctttgc 1800 cagtctctct gggcccccat gaattctttg aagtgtttga ggtagtgggg gtcgacgtca 1860 tcaatgacgt tgtaccaggc gtcgtttgaa tataccttgg gagacagatc caggtgtcca 1920 caaagataat tatggggtcc cagtgaacga gcccacattg ttttgccggt tcggctatca 1980 ccttctagaa caatactgat cggtctccat ggccgcgcag cgggacggca tatattttcg 2040 gatacccata cttctatgtc ttcggggact tgtgtaaaag atgatgataa gaacggacta 2100 acgtaagttt gtggcggagc ctggaagatt ctatctgcgt tagcagatat gttatggaac 2160 tgtaaaaaaa aggactttgg atcttttttt ttaataagtt gaagagcctc ggatttagac 2220 gaagcattca acgcgtctgc atatacctga gctaaatgct ggccctcccc ccttgcactt 2280 ctggcatcga cttggaaaag tccagcgtca agaaagtccc ctcccttttc aatgtaagct 2340 ttgacatcgg acgatgattt agctccctga atgttcggat gaaaatgtgt tgatcgggat 2400 ggggaaatga gatcgaagaa tctcgggttg gtacattgga acttgccttc gaattggatg 2460 agaacatgga gatgaggcac cccatcctga tgtagttctc tgcaaaccct aatgaatttg 2520 atattcgtcg ggtacgaaag ggcttgtaac tgggaaaggg cctcgtcctt tgttaatgag 2580 catcggggat aggttatgaa ataatttttg gcatttattt gaaaacgacc ggctcttggc 2640 atattggctg tcgttttgga tcgggggaca ctcaaaactc cagggaaacg gtggaatggg 2700 gggcaatata tatgatgtcc cccaatggca tatgtgtaaa taggtagact tccattcaaa 2760 atttgaattc cgaatatttg cggccatccg attaatatt 2799 //