ID AJ717517; SV 1; circular; genomic DNA; STD; VRL; 2798 BP. XX AC AJ717517; XX DT 09-MAR-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA A, complete DE sequence, isolate EACMV-UG[K127] XX KW AC1 gene; AC2 gene; AC3 gene; AC4 gene; AV1 gene; AV2 gene; AC1 protein; KW AC2 protein; AC3 protein; AC4 protein; AV1 protein; AV2 protein. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; OC East African cassava mosaic virus. XX RN [1] RP 1-2798 RA Bull S.E.; RT ; RL Submitted (18-MAY-2004) to the INSDC. RL Bull S.E., Department of Disease & Stress Biology, John Innes Centre, RL Colney Lane, Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 1c2cd92b51f3df58523a0a8566499be7. XX FH Key Location/Qualifiers FH FT source 1..2798 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA A" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K127]" FT /mol_type="genomic DNA" FT /country="Kenya:Busia, Funyula/Agenga" FT /clone="K127FA-3[2002]" FT /db_xref="taxon:375009" FT CDS 172..528 FT /codon_start=1 FT /gene="AV2" FT /locus_tag="EACMVsAgp1" FT /product="AV2 protein" FT /db_xref="GOA:A4CYP9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A4CYP9" FT /protein_id="CAJ77944.1" FT /translation="MWDPLVNDFPETVHGFRSMLAVKYLLHLEQEYDRGTVGAEYIRDL FT IGVLRCKNYVEATRRYNNLNTRIQGAEEAELRQPIHEPCCCPHCPRHQKQNMGQQAHVS FT ETQDVQTVSKPRRP" FT CDS 332..1105 FT /codon_start=1 FT /gene="AV1" FT /locus_tag="EACMVsAgp2" FT /product="AV1 protein" FT /db_xref="GOA:A4CYP4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A4CYP4" FT /protein_id="CAJ77945.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVVAPTVRVTRSKIWA FT NRPMYRKPKMYRLYRSPDVPKGCEGPCKVQSFEQRDDVKHLGICKVISDVTRGPGLTHR FT VGKRFCIKSIYILGKIWMDENIKKQNHTNNVMFYLLRDRRPYGNAPQDFGQIFNMFDNE FT PSTATIKNDLRDRFQVLRKFHATVVGGPSGMKEQALVKRFYKLNHHVTYNHQEAGKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1102..1505) FT /pseudo FT /codon_start=1 FT /gene="AC3" FT /locus_tag="EACMVsAgp4" FT CDS complement(1247..1653) FT /pseudo FT /codon_start=1 FT /gene="AC2" FT CDS complement(1562..2641) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:A4CYQ1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A4CYQ1" FT /protein_id="CAJ77948.1" FT /translation="MPRAGRFQINAKNYFITYPRCSLTKEEALSQLQALSYPTNIKFIR FT VCRELHQDGVPHLHVLIQFEGKFQCTNPRFFDLISPSRSTHFHPNIQGAKSSSDVKAYI FT EKGGEFLDAGLFQVDARSARGEAQHLAQVYADALNASSKSEALQIIKEKDPKSFFLQFH FT NISANADRIFQAPPQTYVSPFLSSSFTQVPEDIEVWVSENICSPAARPWRPISTVLEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHSEDQGRQT" FT CDS complement(2251..2484) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A4CYP8" FT /protein_id="CAJ77949.1" FT /translation="MGCLISMFSSNSKASSNVPTRDSSISFPHPDQHISIRTFRELNHR FT PMSKLTLKREGNFLTLDFSKSMPEVQGGRPSI" XX SQ Sequence 2798 BP; 729 A; 553 C; 735 G; 781 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gaccccacaa tgaccgcgcc cgtgaaagaa 60 agtggtccct gcgcacttgt tatggtcggc cagtcatatt cacgcgtgaa agtctagata 120 tttgttgttt gtctttatag acttcgtcgc gaagtagtag agcgcgtcaa catgtgggat 180 ccattggtga acgattttcc cgaaaccgtt cacggtttcc gttctatgct tgctgttaaa 240 tacctgctac atctggaaca ggaatacgat cgcggtacgg tcggggctga gtatatacgg 300 gatctaatag gggttctacg gtgtaagaat tatgtcgaag cgaccaggag atataataat 360 ctcaacaccc gtatccaagg tgcggaggag gctgaacttc gacagcccat acacgaaccg 420 tgttgttgcc cccactgtcc gcgtcaccag aagcaaaata tgggccaaca ggcccatgta 480 tcggaaaccc aagatgtaca gactgtatcg aagcccagac gtccctaagg gctgtgaagg 540 cccatgtaag gtccagtcgt ttgagcagag ggatgatgtg aagcaccttg gtatctgtaa 600 ggtgattagt gatgtgacgc gtgggcctgg gctgacacac agggtcggaa agaggttttg 660 tatcaagtcc atttacattc ttggtaagat ctggatggat gaaaatatta agaagcagaa 720 tcacactaat aatgtgatgt tttacctgct tagggataga aggccgtatg gcaatgcgcc 780 ccaagacttt gggcagatat ttaacatgtt tgataatgag cccagtactg caacaattaa 840 gaacgatttg agggataggt ttcaggtgtt gaggaaattt catgccactg ttgttggtgg 900 tccatctggc atgaaggagc aggcgttggt gaaaaggttt tacaagttga atcatcacgt 960 gacatataat catcaggagg cagggaagta tgagaatcac acagagaatg cgttgttatt 1020 gtatatggca tgtacacatg cctcgaatcc tgtgtatgct acgctgaaaa tacgcatcta 1080 tttttatgat gcagtgacaa attaataaag gttgaatttt attgcatgtt gctccgtaac 1140 ttggagtgtg tttagtaata catcgtacac aacatgatca acagcttgaa ggacagtgtt 1200 aatggaaata acgcctatca tatctaaata cttgagcact tgatatctaa atactcttaa 1260 gaaacgacca gtctgaggcc gtaaggtcgt ccagatcttg aagttgagaa aacacttgtg 1320 aatcccaatg ccttccgaag gttgtggttg aaccgtatct ggagtgtgat gatgtcgtgg 1380 ttcatgttcc ctggcctctt gtcgtggtcg gggatctcga aatagagggg atttgttatg 1440 tcccaggtaa aaacgccatt ccttgcttga ggcgcagtga tgagttcccc tgtgcgagaa 1500 tccatggttg atgcagtcga tatggagata gaacgagcag ccgcattcga ggtctacccg 1560 cctacgtctg acggccctgg tcttcgctgt gcggtgttgg actttgatgg gcactagaga 1620 acaatggctc gtggagggtg atgaaggtgg cattctttaa agcccaggct ttaagggatt 1680 ggttcttttc ctcgtccaga aattctttat atgatgatgt tggtcccgga ttgcagagga 1740 agatagtggg aatgccgcct ttaatttgaa ttggcttccc gtattttgta ttgctttgcc 1800 agtctctctg ggcccccatg aattctttga agtgtttgag gtagtggggg tcgacgtcat 1860 caatgacgtt gtaccaggcg tcgtttgaat ataccttggg agacagatcc aggtgtccac 1920 aaagataatt atggggtccc agtgaacgag cccacattgt tttgccggtt cggctatcac 1980 cttctagaac agtactgatc ggtctccatg gccgcgcagc gggactgcat atattttcgg 2040 atacccatac ctctatgtct tctgggactt gtgtaaaaga ggatgataag aacggactaa 2100 cgtaagtttg tggcggagcc tggaagattc tatctgcgtt agcagatatg ttatggaact 2160 gtaaaaaaaa ggactttgga tctttttctt taataatttg aagagcctcg gatttagacg 2220 aagcattcaa cgcgtctgca tatacctgag ctaaatgctg ggcctccccc cttgcacttc 2280 tggcatcgac ttggaaaagt ccagcgtcaa gaaattcccc tcccttttca atgtaagctt 2340 tgacatcgga cgatgattta gctccctgaa tgttcggatg gaaatgtgtt gatcgggatg 2400 gggaaatgag atcgaagaat ctcgggttgg tacattggaa cttgccttcg aattggatga 2460 gaacatggag atgaggcacc ccatcctgat gtagttctct gcaaacccta atgaatttga 2520 tattcgtcgg gtacgaaagg gcttgtaatt gggaaagggc ctcttctttt gttaatgagc 2580 atcggggata ggttatgaaa taatttttgg catttatttg aaaacgaccg gctcttggca 2640 tattggctgt cgttttggat cgggggacac tcaaaactcc aggggaacgg tggaatgggg 2700 ggcattatat atgatgtccc ccaatggcat atgtgtaaat aggtagactt ccattcaaaa 2760 tttgaattcc gaatatttgc ggccatccga ttaatatt 2798 //