Dbfetch
ID AJ704961; SV 1; circular; genomic DNA; STD; VRL; 2775 BP. XX AC AJ704961; XX DT 12-MAY-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA B, complete DE sequence, isolate EACMV-UG[K282] XX KW BC1; BV1; complete genomic segment; MP gene; NSP gene. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2775 RA Bull S.E.; RT ; RL Submitted (13-MAY-2004) to the INSDC. RL Bull S.E., Disease & Stress Biology, John Innes Centre, Colney Lane, RL Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 20d7458373c2ccf8a731be7bf2431aa2. XX FH Key Location/Qualifiers FH FT source 1..2775 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA B" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K282]" FT /mol_type="genomic DNA" FT /country="Kenya:Makueni, Wote" FT /clone="K282FB-6[2002]" FT /db_xref="taxon:375009" FT CDS 358..1134 FT /transl_table=1 FT /gene="NSP" FT /product="BV1" FT /function="nuclear shuttle protein" FT /db_xref="GOA:A4CYN0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:A4CYN0" FT /protein_id="CAG29085.1" FT /translation="MYSVYRRGYKTPYRSPYGARVTPYVYRKTAVKQTSKSRVPRKLAY FT ESPKCLYTRRSLEDIHNGASLKLPQQGDYTSYVTLPCRGIDGNGGRSVDHIKLLSLRVS FT GTVNVSQCGGDDNMGERTTMRGIFFMACLVDKKPFVPEGVSILPTFNELFGEYESVYGM FT PRLKENVRHRYRVIGTSKLYITTDEEHIQKPFSLRRRLSGGKYPMWSSFKDVDNSSTGG FT NYKNINKNAILVSYVWVSLCRSTCDVYSQFVLNYVG" FT CDS complement(1263..2186) FT /transl_table=1 FT /gene="MP" FT /product="BC1" FT /function="movement protein" FT /db_xref="GOA:A4CYN1" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:A4CYN1" FT /protein_id="CAG29086.1" FT /translation="MDNQFTVTDNNYINSKRTEYALTNDAAPINLQFPSSFEQATMRLK FT GRCMKIDHIIIEYRNQVPFNAIGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSS FT TYFSISEPSPWRIMYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILSKG FT YTKDCIDFWSVEKGETRRRLLNPTPHAHSQRPITHRPITILPGETWATKSQIGLPSSSG FT PARLDHFRSQSMRLDPSTTPTDLDNDSTEYPYQTLHRLHTPELDPGDSVSQTPSDSVSR FT KDLETLLESTINKCLIKIKSEAPRQL" XX SQ Sequence 2775 BP; 774 A; 453 C; 752 G; 796 T; 0 other; accggatggc cgcgcccgaa aaagcagggt gaccctacaa tggcccccac gcactaagta 60 atgtcagcca atcatgttca agactggaag acgcggtagt tacgtattga tgagtaagtg 120 gtcccgacgc actaatgttg acaggcaatt ggattgctat gtgtgtatca tatttttata 180 ggtgtgttac tgggtaatct aaagttaggt gatggggcct atcataaaaa cgcaatacat 240 aggtacgtat gtacatattg attatatttt tgtttgcgga tatatgatcc gccacgtgta 300 taatggatat ggaatgtcct ataaatattt ggcatgtctc ccgtccgtta atgcaagatg 360 tattctgttt acaggcgtgg gtataagacg ccgtatagga gtccgtatgg cgcccgtgta 420 acaccatatg tttatcgtaa gactgctgtt aaacagacgt ctaaatctcg tgtaccgcga 480 aagttggcgt atgaatcgcc aaaatgtcta tatacgcgac gctcattgga ggatatccat 540 aatggggctt ccttaaagtt gcctcaacag ggggattata cgtcctacgt gacactccca 600 tgtcgaggta tcgatggtaa tgggggtagg tctgtcgatc atataaaatt attaagcttg 660 agggtgtctg ggaccgtcaa cgtcagtcaa tgcggtggtg atgataatat gggagagaga 720 acgaccatga ggggtatttt tttcatggct tgtcttgttg ataagaaacc tttcgttcca 780 gagggggtta gtatattgcc gacgtttaat gagttgttcg gggaatatga atccgtgtat 840 ggcatgccta ggttgaagga aaacgttcgt caccgttatc gcgtgattgg gacgtcgaaa 900 ttatatataa cgaccgatga agagcacatc cagaagccat ttagtctacg tcgaagacta 960 agtggaggga aatatcctat gtggtcgtcg ttcaaggatg tggataatag tagtacaggt 1020 gggaactata aaaatataaa taagaacgct atactagtta gttatgtgtg ggtatcgcta 1080 tgtcggtcca cgtgtgatgt gtattcccag tttgtactta attacgtcgg ttgataataa 1140 aacgagataa gtgtgttgac attaattatg tttgaactaa cgaaatatga gatgaacatc 1200 aatggaaagc acatatagtg ttattatgta gcgaatcaaa tatcgtacat atcaagtgtg 1260 tattacaatt gcctgggtgc ttcggatttg attttgatga gacacttgtt tatggtactc 1320 tcaagcagtg tctcgaggtc ctttctggat accgagtcgg atggggtctg tgataccgag 1380 tccccggggt ccaattcggg tgtgtgtaat ctgtgtagtg tctggtaagg atattctgtg 1440 gagtcgttgt ctaagtccgt tggtgttgtc gatgggtcca atctcatgga ctgtgaacga 1500 aagtggtcca gccttgccgg gccggatgag ctgggtagcc caatctgaga cttcgtggcc 1560 catgtttctc cagggagaat ggtgatgggc ctgtgggtta tgggtcgttg actatgagca 1620 tgtggagttg gatttagtaa tcgccgtcgt gtttctcctt tttccacgga ccagaagtct 1680 atgcaatcct ttgtgtagcc cttggataat atgttaattg ttgggggttt gaaacgtatg 1740 tccgtggaat gtttggccga tgataatcgg agcttggcct tgatggatgc gaatttcacg 1800 ccttctatga cgtttgagtc ttcgactctg tacatgattc tccaagggga gggttctgaa 1860 atcgaaaaat atgtagacga gaagtagtgg aggtctacgt tgcaagctat tgggaaagtg 1920 aatgctgctt gagcagcgtc ttcaaggctg acgcgattgt ctctgatttc tacgataacc 1980 gacccaattg cgttaaatgg gacctggttt cggtattcaa ttataatgtg gtcgattttc 2040 atacatcggc ctttgagtcg catggtcgcc tgctcgaatg agctcggaaa ttggagattg 2100 attggtgcag catcgttggt taatgcgtac tctgtgcgtt tgctgttgat gtaattattg 2160 tctgtgacgg tgaattggtt gtccattcta tgaatgaaaa aaacaagggt tagtaaacgg 2220 agagaagaga tgtataaaag tcagagcaag tgtataaaat gtctggtata catggaagca 2280 tatatgtatt gggtatcgat aataacacac taaagcagaa caaggatcat atatgtataa 2340 ttggccgcgc agcggatcgg aagtcagaca aatcggcgaa caaataaaaa agtcgaatga 2400 ggttatggga gggaaacaac ttacgaaagc acctaggaag cagtcgggat tgaattcctg 2460 ttataagtgg ataaaacaaa gaaataaaag ttaacgaaag aaaaatatga cggattggta 2520 tagaaaggaa agtgagcaga tgatatgcgc cgtgtcgtta aatgagatgt tattgggtgt 2580 ttaaataggc gttaataagc gagacgtggt agagagagaa agaagagaga ggcgagagca 2640 atcgggggac actcaaagtc tgtagcaatc gggggaaagg ggggcaattt atatgatgtc 2700 ccctaaatgg catttatgta atatcctcat tgaatgtgaa aggcaaacgt ggaaagcggc 2760 catccgtata atatt 2775 //