Dbfetch
ID AJ704956; SV 1; circular; genomic DNA; STD; VRL; 2766 BP. XX AC AJ704956; XX DT 12-MAY-2006 (Rel. 87, Created) DT 14-SEP-2006 (Rel. 89, Last updated, Version 3) XX DE East African cassava mosaic virus-Uganda variant segment DNA B, complete DE sequence, isolate EACMV-UG[K223] XX KW BC1; BV1; complete genomic segment; MP gene; NSP gene. XX OS East African cassava mosaic virus (Uganda variant) OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2766 RA Bull S.E.; RT ; RL Submitted (13-MAY-2004) to the INSDC. RL Bull S.E., Disease & Stress Biology, John Innes Centre, Colney Lane, RL Norwich, Norfolk, NR4 7UH, UNITED KINGDOM. XX RN [2] RA Bull S.E.; RT "Diversity of cassava-infecting geminiviruses in Kenya"; RL Thesis (2005), MSc (Research), University of East Anglia, Norwich, UK. XX RN [3] RX DOI; 10.1099/vir.0.82013-0. RX PUBMED; 16963765. RA Bull S.E., Briddon R.W., Sserubombwe W.S., Ngugi K., Markham P.G., RA Stanley J.; RT "Genetic diversity and phylogeography of cassava mosaic viruses in Kenya"; RL J. Gen. Virol. 87(Pt 10):3053-3065(2006). XX DR MD5; 7b3f7e9763b0b4e1f07885933f493f39. XX FH Key Location/Qualifiers FH FT source 1..2766 FT /organism="East African cassava mosaic virus (Uganda FT variant)" FT /segment="DNA B" FT /host="Manihot esculenta" FT /isolate="EACMV-UG[K223]" FT /mol_type="genomic DNA" FT /country="Kenya:Suba, Migori/Ragana" FT /clone="K223FB-7[2002]" FT /db_xref="taxon:375009" FT CDS complement(1268..2191) FT /transl_table=1 FT /gene="MP" FT /product="BC1" FT /function="movement protein" FT /db_xref="GOA:A4CYM5" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:A4CYM5" FT /protein_id="CAG29076.1" FT /translation="MDNQFTVTDNNYINSKRTEYALTNDAAPINLQFPSSFEQATMRLK FT GRCMKIDHIIIEYRNQVPFNAIGSVIVEIRDNRVSLEDAAQAAFTFPIACNVDLHYFSS FT TYFSISEPSPWRIVYRVEDSNVIEGVKFASIKAKLRLSSAKHSTDIRFKPPTINILSKG FT YTKDCIDFWSVEKGETRRRLLNPNPTAHSLRPITHRPITILPGETWATKSQLGLPSSSG FT PTRLEHFRSQSMRMDPSTTPTDFDNDSTEYPYQKLHRLHTPELDPGDSVSQAQSDSVSR FT KDLETLLESTINKCLIKIKSDAPRPL" XX SQ Sequence 2766 BP; 760 A; 458 C; 735 G; 813 T; 0 other; accggatggc cgcgcccgaa aaagcaggtg gagcccacaa tggcccctac gcactaagta 60 atgtcagcca atcatgttca agaccggaag actcagtagt gacgcatgga ttattaagtg 120 gtccctacgc actaatgttg acaggcaagt gtatggctat gtgtgtatca tattcttata 180 ggtgtgctac gggccaatct agagttatgt tatggggcct atcataaaaa cgcaaaatat 240 atgtacgtct gtacatattg attatatttt tatttgcgga tatataatcc gccacgtgtt 300 tacaatggat atgtattgtc ctataaatat gttgtatgcc tcccgttctg taatgcaaga 360 tgtattctgt ttacagacgt gggtataaga ctccgtatag gagtccgtat gtcgctcgtg 420 taacaccata tgtttaccgt aaaacctcgt ttaaacagac ggctaaatcg cgtgtatctc 480 gaaagttggt gtatgaatcg cccaaaggtc tatatacgcg acgctcattg gaggatatcc 540 ataatggggc ttccatgaag ttgccgcaac aggggggtca tacgtcctac gtgacactcc 600 cttgtcgtgg tatcgatggt aatgggggta ggtctgttga tcatataaaa ttattaagct 660 tgagggtgtc tgggaccgtc aacgtcagtc aatccggtgg tgatgataat atgggagaga 720 gaacgaccat ggaaggtatt tttttcatgg cttgtcttgt tgataagaaa cccttcgttc 780 cagagggggt cagcacattg ccgacgttca aggagttgtt tggtgaatat gaatccgtgt 840 atggcatgcc caggttgaag gaaaacgtcc gtcaccgtta tcgcgttatt gggacgtcga 900 aattatatat aacgaccgat gaagatcaca tccagaagcc gtttagtcta cgtcgaagac 960 taggtggagg gaaatatcct atttggtcgt ctttcaagga tgtggataat agtagtacag 1020 gtggtaacta taaaaatgtt aataagaacg ctatactcgt tagttatgtg tgggtttcgc 1080 tatgtcggac cacgtgtgat gtgtattcgc agtttgtact taattatgtc ggctgataat 1140 aaaactatat aagtgtttgt tagacattaa ttatgtgaga acgaactaaa caagagatga 1200 acattaatgg gaagcatata gagtttgatt atgctccgaa gtaaatatgg tacatataaa 1260 tggtttatta caatggcctt ggtgcgtcgg attttatctt gatgaggcac ttgttgatgg 1320 tactctcaag cagtgtctcg aggtcctttc tggatactga gtcggattgg gcctgtgata 1380 ccgagtctcc tgggtctaac tctggtgtgt gtaatcggtg tagtttctgg taaggatatt 1440 ctgtggagtc gttgtcaaag tctgttggtg ttgtcgatgg gtccattctc atggactggg 1500 aacgaaagtg ttccagcctt gttgggcctg atgagcttgg tagcccaagc tgagactttg 1560 tggcccatgt ttctccaggt aagatggtaa tgggtctgtg ggtgatgggt cgtagactat 1620 gagcagttgg atttggattt agtaacctcc gtcgtgtttc tcctttttcc acggaccaga 1680 agtctatgca atcctttgtg tatcctttgg ataagatgtt aattgttggg ggtttgaaac 1740 gtatgtccgt ggaatgtttg gccgatgata atctgagctt ggccttgatg gatgcgaatt 1800 tcacgccttc tatgacgttt gagtcttcga ccctgtacac gattctccaa ggggagggtt 1860 ctgaaattga aaaatatgta gaagagaagt agtggaggtc tacgttgcaa gcgattggga 1920 aagtgaatgc tgcttgagct gcgtcttcaa ggctgacgcg attgtctctg atttctacga 1980 tcaccgaccc aattgcgtta aatgggacct ggtttcggta ttcaattata atgtggtcga 2040 ttttcataca tcggcctttg agtcgcatgg tcgcctgctc gaatgagctc ggaaattgga 2100 gattgattgg tgcagcatcg ttggttaatg cgtactctgt gcgtttgctg ttgatgtaat 2160 tattgtctgt gacggtgaat tggttgtcca ttctatgaat gaaaaaaaca agggttaata 2220 aacggagaga agagaggtgt aaaagtcaga gcaaggttta taaaatgtat tgtagacatg 2280 gaagcatata tgcatttgat atggataata acacactaaa gcagaacaag gatcatatat 2340 gtataattgg ccgcgcagcg gattggaagt cagataaatc ggcgaacaaa taaaaaagtc 2400 gaatggggtg atgggagtga aacgacttac ggaatcacgg aggaagcagt ctggagtaaa 2460 tgcctgtgat aattcggaga aatcaaagaa ataaaagtat aacgtattgg tatagaaagg 2520 aaagtgagca tatgttatgc gccgtgtcgt taaatgagag gctatgggtg tttatatagg 2580 cgttaataag cgacacgtgg tagagagaga aagaagagag aagcgagagc aatcggggga 2640 cactcaaagt ctgtagcaat cgggggaaag gggggcaatt tatatgatgc cccctaaatg 2700 gcatttatgt aatatcctca ttgaatttga aattcaaacg tggaaagcgg ccatccgtat 2760 aatatt 2766 //