ID AJ621358; SV 1; linear; genomic RNA; STD; VRL; 3315 BP. XX AC AJ621358; XX DT 19-JUL-2004 (Rel. 80, Created) DT 04-NOV-2004 (Rel. 81, Last updated, Version 2) XX DE Cherry rasp leaf virus mRNA for putative movement protein (MP gene), coat DE proteins VP25 (Vp25 gene), coat protein VP20 (Vp20 gene) & coat protein DE VP24 (Vp24 gene), RNA2 XX KW MP gene; Vp20 gene; Vp24 gene; Vp25 gene; movement protein; KW coat protein VP20; coat protein VP24; coat protein VP25. XX OS Cherry rasp leaf virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Secoviridae; Cheravirus; Cheravirus avii. XX RN [1] RP 1-3315 RA Thompson J.R.; RT ; RL Submitted (19-JAN-2004) to the INSDC. RL Thompson J.R., Plant Pathology, Cornell University, Bradfield 202, Plant RL Pathology, Cornell University, NY, 14850, USA. XX RN [2] RX DOI; 10.1007/s00705-004-0362-3. RX PUBMED; 15503203. RA Thompson J.R., Perry K., De Jong W.; RT "A new potato virus in a new lineage of picorna-like viruses"; RL Arch. Virol. 149(11):2141-2154(2004). XX DR MD5; de32c07959a4858e992edaf7bf49c6bf. XX FH Key Location/Qualifiers FH FT source 1..3315 FT /organism="Cherry rasp leaf virus" FT /isolate="potato isolate" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:202566" FT CDS 293..3175 FT /product="polyprotein" FT /db_xref="GOA:Q6EWG8" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q6EWG8" FT /func_characterised="identical sequence" FT /protein_id="CAF21714.1" FT /translation="MEPERSQLAPEEVPDSFRVETPAAMLARLRAESAAKKEAARRAAM FT PYNDDLLVGSELTYLAKDDVFGCGRSALKRLFSRPSAEENVVVSHPLSVKEQVVRYQRP FT RTDHDPYVAVYTPLPHITEEQARKLMEKGFSNSSNVALDMAVQSHVGQGTPLLAMCGIM FT DSRTDDPNEALQVAGYFDLGRDRCDLISLPLINFPLNKEDFDDYMRGLYLCTMFHNVRG FT FQNNKALCSYSAVGFDQHKETPRCIRSRVKESWEDILARNNENEFSRVQSGQNLLNAIE FT KERNEAIPDVGAHQFACVPPSKGTPQTSLLTSDGVIKRPNFTLPRSASTRFNMPLNMRY FT SGRNSVDTARHSLTTNSGGRSTSLRQDPNLLEGQGPSIDFTKIIFPTVVERNFSNPRAE FT IVNTIKQLYGDTVETLSVNPPESYSAERLIGRVFSTLHGSFGATDLVEGKVLMSVKIVD FT LLSSANLGALLLAEVLGGNLTMRVTALITLNKYTSFALKLVYDELAQLAPDATNFGVAS FT VLPGAIFPSQEKSFSFDFNIFSMGSYINFKENEGFGRISLVALSSPNLPDQMPDSANIT FT LEFSVVNVDTSVYNLGQGQCLDLDRFPVHVTSKSKALSGGAKHAQAEFSLNLYELGPHF FT NRFQAICGHLAGYSGDLIIDWMISASALTNGRCYIVPVYDQNTFSEVSEEKLRQCKYVS FT KELSLNRSGTVHMPFSSSFGSYTKNKYPKLLFVFPGGISGPSGETIHVNIQVRDVLHFS FT GLGHQLLKPILAAEGPDPFSFHLFYLHCGTLKTESLNKGGMWCVPVSPINLAAMKHGTG FT SSLVFNESFVSKTHNWLHYMASCTAYWRGTLTYELRVTYNSRVNAVANLVAFYTSQVED FT LFGFSDKAVGDTGIASICGDAFSVRISIPFVTPTLWLRTYRNAYDVFTSCNGSLYFHLP FT TSGVKSVQLFVRAESDFSFERFRALKAEYT" FT mat_peptide 293..1311 FT /gene="MP" FT /product="putative movemenr protein" FT mat_peptide 1412..2068 FT /gene="Vp25" FT /product="coat protein VP25" FT mat_peptide 2069..2593 FT /gene="Vp20" FT /product="coat protein VP20" FT mat_peptide 2594..3172 FT /gene="Vp24" FT /product="coat protein VP24" XX SQ Sequence 3315 BP; 799 A; 723 C; 720 G; 1073 T; 0 other; cgttttagag tgcatgaagt tgttgttgtt gttctgtttt gttatcttgt tttgttacca 60 agatttgttc acagttgctt cttttgtttc tctaccgtca aactctctga atctttcaat 120 tcaaattttc ctttgctttc tgttggatta tacccacaga attttaccgg aagttttatt 180 cttccaaaaa cttgctgcaa gcgacgctcg tcttagagcc agctccagca ttccctctcc 240 tcctcctttg ccaatcttgg cagtttttgt ttttcctctc tctccccaag ctatggaacc 300 agagcgttct caactggcac ctgaagaggt gccagattct ttccgggtgg aaacacccgc 360 tgctatgctt gctcggcttc gtgctgagag tgctgccaag aaagaggcag cacgtagggc 420 tgctatgccc tataatgatg atctgctggt gggctctgag ctcacctatc ttgccaaaga 480 cgatgtcttt ggctgtgggc gctctgccct caaaaggctc ttttctcggc cttctgccga 540 ggaaaatgtg gtggtgagcc accccctctc tgtcaaagag caggtggttc gctaccagcg 600 accacgcact gaccacgatc cttatgtggc agtttacaca cccttgcctc acatcactga 660 ggagcaagcc cggaaactca tggagaaggg cttctccaat tcaagtaacg tggctctgga 720 tatggccgtc cagagtcacg ttgggcaagg aacccctttg ctggctatgt gcgggataat 780 ggattcccgt actgatgatc caaatgaagc cttgcaagtt gcaggctact tcgatcttgg 840 tagggaccgc tgcgatctca tctccctccc gttgatcaat tttcccctga ataaggagga 900 ttttgatgat tacatgcggg gtctctacct ttgcaccatg ttccacaatg tgcgtggttt 960 ccaaaataac aaagctctgt gtagttattc tgcagttggc tttgatcagc ataaggaaac 1020 gccacggtgc attcgctctc gtgttaaaga gagttgggag gatatcctgg caagaaacaa 1080 tgagaacgag ttctcacgag ttcagtctgg ccagaatctt ctcaatgcta ttgagaaaga 1140 gcgaaatgaa gcaatacctg atgtgggagc tcatcagttt gcttgtgtac caccttcaaa 1200 aggtacacca caaacatctc tgctgacatc tgatggtgtc atcaagagac ctaactttac 1260 actcccgcgg agtgctagca cacgatttaa catgccactg aatatgcgtt attctggacg 1320 aaattcagtt gatactgcta gacactctct gacaactaat tctggtggta gatcaacctc 1380 cctccgccag gatcctaacc ttttagaggg acaaggtccc tcaatagatt ttacaaaaat 1440 tattttcccc actgtcgtgg agagaaattt ctccaaccct agagctgaaa ttgtaaatac 1500 catcaagcag ctctatggag atactgttga aactctatca gttaatcctc ctgagtctta 1560 ctcagcggag agattgatag gtagagtttt ctccaccctt catggtagtt ttggggctac 1620 tgaccttgtc gaaggaaaag tcttaatgtc cgtgaaaata gttgatttac tgtcaagtgc 1680 aaacttggga gctttgctcc tagctgaagt tcttgggggt aacttaacta tgcgcgttac 1740 agctcttata acgcttaaca agtatacgag cttcgctctt aaacttgtat atgatgagct 1800 tgcgcaattg gctccagatg ccaccaattt tggtgtggct agcgtccttc ctggagcgat 1860 ttttccttcg caagagaagt ctttttcctt tgattttaat atattttcta tgggtagtta 1920 tattaatttt aaggaaaatg aaggctttgg tcggattagt ttggttgctt tgagttcgcc 1980 aaatttgcct gatcaaatgc cagattctgc taacataaca ctagaatttt cagtagttaa 2040 tgtagatact agtgtttata acttaggaca agggcagtgt ctcgacttgg atcgcttccc 2100 tgtacatgtt actagtaaat ccaaggccct cagtggtggt gccaagcacg ctcaagctga 2160 attttcttta aatctttatg agcttggccc acattttaat agatttcagg ctatctgtgg 2220 tcatcttgct ggttattctg gcgacttgat tatagattgg atgattagtg cttctgctct 2280 aacaaatggg cgctgttata tagtacctgt ttatgatcag aacacttttt ctgaagtctc 2340 tgaggagaaa cttaggcagt gtaaatatgt ttctaaggaa ttatcactca ataggagtgg 2400 tactgtacat atgccttttt cttcgagttt tggttcttat actaagaata aatatcccaa 2460 acttttgttt gttttccccg gtggaatttc gggaccatca ggagaaacaa tacatgtaaa 2520 tattcaagtg cgggatgtct tacatttttc cgggttagga catcagcttc ttaagcccat 2580 tttggcagct gagggtcctg atcctttttc tttccatctt ttttatttac attgtgggac 2640 tcttaaaaca gaatccctta ataaaggtgg tatgtggtgt gtgccagttt ctccaataaa 2700 cttggcggct atgaaacatg ggactggaag ctctctagtt ttcaatgagt cctttgtgag 2760 caaaacacat aactggctcc actacatggc tagttgcaca gcctattggc gaggaacatt 2820 aacctacgaa ttgcgtgtta catacaacag tagggttaat gccgttgcca atcttgttgc 2880 tttttatact tctcaagttg aagatctatt cggattctca gataaagctg tgggcgacac 2940 tgggatagca tccatttgtg gtgatgcttt ctctgttcgc atttctatac cttttgtcac 3000 acccactttg tggttgagga catataggaa tgcttacgat gtgttcacgt cttgtaacgg 3060 atccttgtac ttccatttac ctacttcagg ggtgaaatcc gttcaactgt tcgttcgtgc 3120 tgaatccgat ttttcttttg agagatttag agcactcaag gctgagtata cttagtcttc 3180 tgtttccttt tttagtctgt aaatactcat tttagctttc ctagtgtaag ctcctgttta 3240 gcaggtcgtg ccttcagcaa gcacaccaaa aagatttgct ttttcttgag tctttagagt 3300 cttttggagg gatcc 3315 //